stat1b (stat1,LOC107728932,LOC107660594,LOC107602152,LOC107714382,LOC107565020)


Basic Information

Item Value
gene id stat1b
gene name stat1,LOC107728932,LOC107660594,LOC107602152,LOC107714382,LOC107565020
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 19781663 ~ 19790963 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248967.1
CTGCGTCAGCCTTCCATATTTTACCTTTATGGGGTTGCTGAAAAGAATATAAGTCTGAAACAGACGCAGTTTAGTCTAGTTGTATCTCGTGTATTTGCGTAGCCTGAGATATACTGCTTTTGTGCCTTGACCCAACTTCTATGTTGAAAGATGACACTCTGGAACCAGCTGCAGCTGCTGGACTCTCTGTATTTAGAGCAAGTGGACCAGCTTTACGATGAGGCTTTTCCAATGGAGATCCGACAGTATCTCAGTCAGTGGATTGAGGGTCACGACTGGGAATCAATTGCCAGTAACGTATCTTTGGCAACCCTGCGCTTCCATGAACTCCTGAATCAACTGGATGAGCACTACAGCCGTCTCAACCTAGGAAACAACTTCCTTTTGCAGCATAATATACGCAAAATTAAGCGTAACATACAGGAGCACTTCCAGGAGGATCCTGTTCACATGGCTATGATCATAGCTAGCACTCTGAATGAAGAGAGAAAGATACTGGAAAATGCACTTAGAACTCAAGGTAACGGTGGCTCATCACAGGGGAGTGCAATGATGGAACAGCAAAATGAGTTGGGCACTAAAGTCAACAAATTGAAAACAACCGTGCAGGAAGTGGAACAGGACATTCAGGTTCTGGAGGATGTGCAAGATGAGTACGACTTCAAGAGAAACACTTTGCAGAGTCGAGtggaAGTTGAAATGAATGGCCAGGTAACGAAAGAGGTCAAGCAGGAGGAAATGGCAATCAGACAAATGTTCGTTGGGCTGAgcatgaaaagagagGTGGTGATAAAAGAAATCGCTAATGCGCTGACTCTAGCAGAGCAGATCCAGCTCACACTCATATCTGAAGAGTTACCTGAGTGGAAGAAGAGACAGCAGATGGTTTGTATCGGAGGGCCGCCCAATGCCTGTCTGGACCAACTGCAGAGCTGGTTCACGGTGGTGGCGGAGTGTCTTCAGCAGATCCGTCAGCAGCTGAAGAAGGTTCAGGAACTGGTGCAGAAATTCACCTACAACAACGACCCCCTCACCCTGGGCAAGAGCCAGCTGGATGACCAGGCCCTTTTACTCTTCAAAAACCTTATAATACATTCTCTTGTGGTGGAGAGACAGCCTTGCATGCCGACACATCCTCAGAGACCCTTGGTGATAAAAACGGGAGTTCAGTTTACAGTCAAGATCAGatCACTAGTCAAACTCCCTGAACTGAACTGCCAACTCAAAGTAAAAGTTTCTATTGACAAagATTTAACAGAGAAAGACACAATAAAAGGATGTAGgaaattcaacattttaggAACGTTTTCTAAAGTTATGAACTTAGAGGAATCTAGTGGGTGTCTAGCAGCTGAGTTTCGTCATTTGCaattaaaagagatgaaaagtaACAACAGAACCAATGAGACTCCTCTCATCATTTCTGAGGAGCTGCACATCCTTAACTTTGAAACTCAACTCATTCAGCCAGAACTATGTGTTGATTTATCGATCACATCACTTCCTATTGTGGTGATATCTCACGTGAATCAGATGCCTAGTGCCTGGGGCTCTATCTTGTGGTACAACATGCTCTGCAGTGAACCCCACAATCTGACGTTCTTCTTGAATCCTCCACCTGTGAAATGGGAGCAGCTTTCAAAGGTCTTGAGCTGGCAGTTTTCTTCTACCACTAAACGAGCTCTGAACTCTGAGCAGCTGAGAACGCTGGCCGACAAAGTGCTTGGTCATGAAACCCAAGGGGATCATGAAGGTCTCGTCCACTGGAATACATTTTGTAAGATGTCTCCTAATGAGAGGGGTTTACCATTCTGGCTGTGGATAGATGGGATTCTGGACCTCATTAAAAGACATCTACTCAACATCTGGAATGATGGGTATATTATAGGGTTTTTGAGTAAAGAGCGAGAGAAGGCTTTGTTGAGCAGCAAACTGCCGGGCACTTTCCTTCTGCGCTTCAGTGAATCCTGTCGAGACGGAGGAATCACAATCACATGGGTGGAGTATTCACAGGACGGTGAACCTAAGACGCATTCAGTGAAGCCCTACACTAAATCAGATCTGGCATCTATTTCCTTGCCTAATGTCATCCGTGACTACACCCTCACTGCTGCACAGAAGATTCCAGTGAACCCCCTCGTCTACCTTTACCCAGACATCCCAAAAGATGAGGCCTTTGGTCGCTACTATATCTCTTCTGATGACGATCCAGAAGAGATGGAGACAGACAAACCTAAGTCATATATCAGGCCATATATAGACAGGCGCATCATTTCTGTGTCAGATGAACCTTTTTCAAGACCACGTAAGTGTTAGAGCACCTCGAGGCAAAACTACGAAGAACGTTACTCCGACAATGAGCCTCAATTTAATCCAGcgcttttattaaaagaaaatgtatctgTTTCTAAAAGTATTGTATCTGCCACACGGATATCTATAACGAATAATGGATACAAATAGTGATACCAAAATAATTTATCTTTGCACGGGTTTTATATAAAGATCTACTACATTTATTCTCCACTCGTGTGAAGAAGAGGAGCTATTTCCTTCTGCCATGCCTTAAAACctgttctttttgtttgtttgtttgtttgtttgtgtaaaaatgtgaacATATTGTAAAGAAACTAGCATGTTGCTTGGATTTTAAATTTCTGTGTACCAGTCACTCATAAAGATAAAGATACTGGATGTATACAAAAACTCTGAAAAGCTGTTCTTGAGAGAGACATTTGTGAAAAAGACATCCTCCTTCATCTTGTGaagtacttatttattttttgcacattaaaatatcttttcatACAATTGCACatgtactgtacacacacaccaGCCAGATACAGTCTACCAGAAATAAACATCAACCTACCTTCAGCAGTTACAAATACTCCTATAGATCCAAGCCAGGTCCATTAGGCAATGTTACTGTcatgtgaattaaaaataaagtgtattaaacggtttatatttatgtaataagcatttttttaacagcGGTTTGTCCGTCTTTTTCTCCAGATGGTAATCTTTTCTCTgaagcttaaaaataaagtgtagtgcaaaaataaatattggctGTTTCCAAACA

Function

symbol description
stat1 Enables several functions, including RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; enzyme binding activity; and promoter-specific chromatin binding activity. Involved in several processes, including cellular response to cytokine stimulus; macrophage derived foam cell differentiation; and positive regulation of macromolecule metabolic process. Located in several cellular components, including chromatin; nuclear lumen; and perinuclear region of cytoplasm. Part of protein-containing complex. Colocalizes with nucleus. Implicated in breast carcinoma; immunodeficiency 31A; immunodeficiency 31B; immunodeficiency 31C; and prostate adenocarcinoma. Biomarker of angiomyolipoma; breast cancer; hepatitis C; lymphangioleiomyomatosis; and nephroblastoma.

NR:

description
signal transducer and activator of transcription 1-alpha/beta-like isoform X2

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248967.1 True 3097 mRNA 0.42 23 19781663 19790963

Neighbor

gene id symbol gene type direction distance location
stat4 stat4,LOC107660593,LOC107728930,LOC107714380,LOC107657497 coding upstream 2767 19766663 ~ 19778896 (+)
slc40a1 slc40a1,LOC107660595,LOC107602151 coding upstream 33352 19741640 ~ 19748311 (+)
zgc:136439 zgc:136439,LOC107660597,LOC107602150,LOC107728935 coding upstream 47692 19732355 ~ 19733971 (+)
osgepl1 osgepl1,LOC107660598 coding upstream 61228 19717262 ~ 19720435 (+)
mstnb LOC107728928,LOC107602146,LOC107660602,LOC107657539 coding upstream 104827 19673260 ~ 19676836 (+)
LOC122351701 NA coding downstream 1248 19792211 ~ 19793933 (+)
nemp2 LOC107660589,LOC107728924,LOC107714385,LOC107602139,LOC107565024,LOC107657526 coding downstream 81458 19872421 ~ 19881143 (+)
spegb speg,LOC107602155,LOC107714387,LOC107728905,LOC107657495 coding downstream 107861 19898824 ~ 19972821 (+)
ctdsp1 ctdsp1,LOC107714388,LOC107602156,LOC107660585,LOC107657521,LOC107584167,LOC108423903,LOC103359966 coding downstream 184513 19975476 ~ 19996549 (+)
col18a1a LOC107660582,LOC107657518,LOC107714390,LOC107584150 coding downstream 249909 20040872 ~ 20106279 (+)
G71636 NA non-coding upstream 16445 19764954 ~ 19765218 (+)
G71633 NA non-coding upstream 23869 19757305 ~ 19757794 (+)
G71632 NA non-coding upstream 24558 19756560 ~ 19757105 (+)
G71631 LOC107660592,LOC107728907 non-coding upstream 25485 19755866 ~ 19756178 (+)
G71629 NA non-coding upstream 26570 19754524 ~ 19755093 (+)
G71705 LOC107660652,LOC107602158,LOC107728922 non-coding downstream 209833 20000796 ~ 20003786 (+)
G71783 NA non-coding downstream 480045 20271008 ~ 20602247 (+)
G71813 ttn,ttnb,LOC107716993,LOC107714355,LOC107601612,LOC107657493,LOC107698997 non-coding downstream 543123 20334086 ~ 21173177 (+)
LOC122351566 NA non-coding downstream 602716 20393679 ~ 20395192 (+)
G71821 ttnb,ttn,LOC107716993,LOC107657493,LOC107601612 non-coding downstream 630192 20421155 ~ 20431311 (+)
ormdl1 ormdl1,LOC107602148 other upstream 67259 19709364 ~ 19714404 (+)
G71585 NA other upstream 160170 19621284 ~ 19621493 (+)
vwc2l vwc2l,LOC107660607,LOC107657506,LOC107714362,LOC106586444 other upstream 237986 19512854 ~ 19543677 (+)
cps1 cps1,LOC107660611,LOC107741925 other upstream 850201 18896602 ~ 18931462 (+)
lmln lmln,LOC107741941,LOC107555912,LOC107673747,LOC107596075,LOC107714369,LOC107660656 other upstream 1092121 18682672 ~ 18689542 (+)
si:dkey-10c21.1 NA other downstream 422432 20213395 ~ 20218120 (+)
gulp1a gulp1,gulp1a,LOC106581930,LOC107584160,LOC107717010,LOC107657514,LOC107562715,LOC107699007,LOC107714392 other downstream 557864 20348827 ~ 20362462 (+)
G71825 ttnb,LOC107657493,LOC107714355,LOC107601612,LOC107716993,LOC107698997 other downstream 634038 20425001 ~ 20750851 (+)
G71835 ttnb,LOC107716993,LOC107698997,LOC107601612,LOC107714355,LOC107657493 other downstream 646195 20437158 ~ 20764175 (+)
G71842 LOC107728921,LOC107660591,LOC107602138 other downstream 768679 20559642 ~ 20569276 (+)

Expression


Co-expression Network