spopla (spopla,LOC107751611,LOC107556446,LOC107720326,LOC107558043,LOC107658226,LOC107663914)


Basic Information

Item Value
gene id spopla
gene name spopla,LOC107751611,LOC107556446,LOC107720326,LOC107558043,LOC107658226,LOC107663914
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 9601986 ~ 9610746 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248969.1
TTGGCAGGATAAGCAGCACACTGCAAGCTACAGTGATGGGCTGCTTTTGAAAAGACACAAATACACTTCAGTCGTAAATAGTAGCGATTAAACTTAACAGATCCACAAGGACCTCCCGAATCTTGAATTTAACAGTATTGACAGAATGACGAGAAAAGGTTGGGATGAGGAGCCCTTGGATCATGCTGTAAAGTCACAGTAAAACAAGGTTGTTTCTTCAGTATTTACCTGATACTTGTACAATGGCATCAAGAAATGAAATTCAAGATATTTACTGAACTTTAGGTTAAGTGGTGAAAGCTTTGGGACCGTCAGCGCTTCTTGTAGCGGGGAGTGAGCTGGCCATGTCAGGGGTCCCAACCCCTCCTCCTCCAGGGGAGATGTCCAGTGGGCCTGTGGCGGAGAGCTGGTGCTATACCCAGGTCAAGGTAGTGAAATTTTCCTACATGTGGACCATAAACAACTTCAGCTTCTGTCGAGAAGAGATGGGTGAAGTATTGAAGAGCTCTACATTCTCCTCAGGGCCTAATGATAAGATGAAATGGTGCCTACGGGTCAATCCGAAGGGACTGGATGATGAAAGTAAAGATTATCTATCACTATATTTGCTACTAGTTAGTTGTCCAAAAAGTGAAGTCAGAGCCAAGTTCAAGTTTTCTTTACTGAACGCTAAACGGGAGGAGACAAAAGCTATGGAAAGCCAAAGAGCCTATCGGTTTGTCCAAGGCAAAGACTGGGGCTTCAAAAAATTTATTAGGAGAGATTTTCTGCTTGATGAAGCAAATGGGCTGCTACCAGATGATAAACTCACGTTATTTTGTGAGGTAAGCGTTGTCCAGGACTCTGTGAACATCTCCGGACAGTCCAACATGAACATGTTGAAGGTTCCGGAGTGCCAGCTGTCCGACGACCTGGGTAACTTGTGGGAATGCTCACGCTTCACGGACTGCACTCTATATGTGGGAGGCCAGGAGTTCAAAGCCCACAAATCCATCCTGGCAGCAAGATCACCGGTCTTTAATGCCATGTTTGAACATGAAATGGAGGAAAGTAAAAAGaACCGAGTTGACATCAGTGATGTTGAACCGGAGGTTTTCAAAGAAATGATGGGCTTCATATACACAGGAAAAGCACCAAATTTAGAGAAAATGGCTGATAGTTTATTGGCCGCAGCGGATAAAgaaaagaaagtcatacaggtttggaacaacatgaaggtgaacAAATGCTGGTACGCTCTGGAGCGCTTAAAGGTCATGTGTGAGGAAGCCCTTTGCAACGGCCTCTCGGTGGAGAACGTGGCAGACACCCTCATCCTGGCCGACTTGCACAGCGCAGAGCAGCTCAAAGCACAGGCCATAGATTTTATCAACAGGTGCAGTGTCCTCCGACAGCTGGGCTGTAAAGATGGGAAAAACTGGAATAGCAATCACGCCACGGACATAATGGAGACCGCGGGCTGGAAGTCAATGATCCAGTCTCATCCTCACTTAGTGGCGGAGGCTTTCCGCGCGCTCGCGTCAGCGCAGTGCCCCCACTTCGCTCTGCCAAGAAAGCGCCTAAAACAGTCGTGACGACGTTCCCGCTGCTCTCTTGGGCCAGAAAACTGCGGCGTTTAGACTATCCCATTGTCATCCGACCCGACAGCACGTGACTGGGACAGGCTGGCTTCTGAACGGCAGCGAAAGCCGTTCACACCCTTCCTGAGCGATGGGTTCGGCATCTGAGCTTTATTTTGCGAATCTTTCTGTCACTTCAAACAGCCTTAAACTATCTGCCATGACTCTTGTGTGGAGTATTTGAATTCTCTCAGTTCTACTCTGTGCCTGCCTTGTCCCATGAGACCAGGCCTCTTCCCTGTTGCACTAGTTCCCAAAGTCTCGCTGTTTTATATGGCGCTTCCTAGGAATGTGTCAGAAGTTCGATCCACGGGAAATAGTATATATTCCTAATGTTTAGTTGTGCGACTagacattaattaaatgttaacacAATGAGTGCAAGGTCATTTCTTTACACTTTTTGAAAAGATAGCTATGCCCCATATTGATGGCACGATTTCTATGTAAAGACACGGTTAAACCACGGGGAGGGGAGGAGAGAGTACTAGTACTATTCCATActgtgggggaaaaaagcatttcagaTATTTGTATTGATGTGTGTGACAAGGAATTGTTGTTTGTGTCCTGCCCCTTGACctgtgaaaacatttaaagtgtcaTCTATTCACAATTTTACAAGCGACTACATTTTTAGACACGATAGCGTTGCTTCCCTTCAATTGGTCTGCCATATACAGACAAGTAGTTTGAAGTTGTCTGGCCcataatgcatttgtgtatCCTGATTGAACTAGACAATCCATCTTTAAACACATTGTCCTCTGTGATCAGGAAATGTTTGGATGCTGAGCATCAGAGTGTGGCATATGGATGAACTGATGAATGTGTTTGAGAGGTACAGATAGATTGATTGTCATCGATCTATCAGAGATTTGTTTTGAGCTGTGGCGTTACAGTCCAATTGACAGTGATTTAGAAGAGGACTCTACATTGTGTCATGCTAAACTGACTTGTTCTGTTAAAGGACATGTTTTGTGAAGATTCTGGAATTTGTTccgtcttttaaaaatattgtctgCGAGAATGCCTGCAttaactcattaaaaaaaaaaacattttcaacatcCA
>XM_043248970.1
TTGGCAGGATAAGCAGCACACTGCAAGCTACAGTGATGGGCTGCTTTTGAAAAGACACAAATACACTTCAGTCGTAAATAGTAGCGATTAAACTTAACAGATCCACAAGGACCTCCCGAATCTTGAATTTAACAGTATTGACAGAATGACGAGAAAAGGTTAAGTGGTGAAAGCTTTGGGACCGTCAGCGCTTCTTGTAGCGGGGAGTGAGCTGGCCATGTCAGGGGTCCCAACCCCTCCTCCTCCAGGGGAGATGTCCAGTGGGCCTGTGGCGGAGAGCTGGTGCTATACCCAGGTCAAGGTAGTGAAATTTTCCTACATGTGGACCATAAACAACTTCAGCTTCTGTCGAGAAGAGATGGGTGAAGTATTGAAGAGCTCTACATTCTCCTCAGGGCCTAATGATAAGATGAAATGGTGCCTACGGGTCAATCCGAAGGGACTGGATGATGAAAGTAAAGATTATCTATCACTATATTTGCTACTAGTTAGTTGTCCAAAAAGTGAAGTCAGAGCCAAGTTCAAGTTTTCTTTACTGAACGCTAAACGGGAGGAGACAAAAGCTATGGAAAGCCAAAGAGCCTATCGGTTTGTCCAAGGCAAAGACTGGGGCTTCAAAAAATTTATTAGGAGAGATTTTCTGCTTGATGAAGCAAATGGGCTGCTACCAGATGATAAACTCACGTTATTTTGTGAGGTAAGCGTTGTCCAGGACTCTGTGAACATCTCCGGACAGTCCAACATGAACATGTTGAAGGTTCCGGAGTGCCAGCTGTCCGACGACCTGGGTAACTTGTGGGAATGCTCACGCTTCACGGACTGCACTCTATATGTGGGAGGCCAGGAGTTCAAAGCCCACAAATCCATCCTGGCAGCAAGATCACCGGTCTTTAATGCCATGTTTGAACATGAAATGGAGGAAAGTAAAAAGaACCGAGTTGACATCAGTGATGTTGAACCGGAGGTTTTCAAAGAAATGATGGGCTTCATATACACAGGAAAAGCACCAAATTTAGAGAAAATGGCTGATAGTTTATTGGCCGCAGCGGATAAAgaaaagaaagtcatacaggtttggaacaacatgaaggtgaacAAATGCTGGTACGCTCTGGAGCGCTTAAAGGTCATGTGTGAGGAAGCCCTTTGCAACGGCCTCTCGGTGGAGAACGTGGCAGACACCCTCATCCTGGCCGACTTGCACAGCGCAGAGCAGCTCAAAGCACAGGCCATAGATTTTATCAACAGGTGCAGTGTCCTCCGACAGCTGGGCTGTAAAGATGGGAAAAACTGGAATAGCAATCACGCCACGGACATAATGGAGACCGCGGGCTGGAAGTCAATGATCCAGTCTCATCCTCACTTAGTGGCGGAGGCTTTCCGCGCGCTCGCGTCAGCGCAGTGCCCCCACTTCGCTCTGCCAAGAAAGCGCCTAAAACAGTCGTGACGACGTTCCCGCTGCTCTCTTGGGCCAGAAAACTGCGGCGTTTAGACTATCCCATTGTCATCCGACCCGACAGCACGTGACTGGGACAGGCTGGCTTCTGAACGGCAGCGAAAGCCGTTCACACCCTTCCTGAGCGATGGGTTCGGCATCTGAGCTTTATTTTGCGAATCTTTCTGTCACTTCAAACAGCCTTAAACTATCTGCCATGACTCTTGTGTGGAGTATTTGAATTCTCTCAGTTCTACTCTGTGCCTGCCTTGTCCCATGAGACCAGGCCTCTTCCCTGTTGCACTAGTTCCCAAAGTCTCGCTGTTTTATATGGCGCTTCCTAGGAATGTGTCAGAAGTTCGATCCACGGGAAATAGTATATATTCCTAATGTTTAGTTGTGCGACTagacattaattaaatgttaacacAATGAGTGCAAGGTCATTTCTTTACACTTTTTGAAAAGATAGCTATGCCCCATATTGATGGCACGATTTCTATGTAAAGACACGGTTAAACCACGGGGAGGGGAGGAGAGAGTACTAGTACTATTCCATActgtgggggaaaaaagcatttcagaTATTTGTATTGATGTGTGTGACAAGGAATTGTTGTTTGTGTCCTGCCCCTTGACctgtgaaaacatttaaagtgtcaTCTATTCACAATTTTACAAGCGACTACATTTTTAGACACGATAGCGTTGCTTCCCTTCAATTGGTCTGCCATATACAGACAAGTAGTTTGAAGTTGTCTGGCCcataatgcatttgtgtatCCTGATTGAACTAGACAATCCATCTTTAAACACATTGTCCTCTGTGATCAGGAAATGTTTGGATGCTGAGCATCAGAGTGTGGCATATGGATGAACTGATGAATGTGTTTGAGAGGTACAGATAGATTGATTGTCATCGATCTATCAGAGATTTGTTTTGAGCTGTGGCGTTACAGTCCAATTGACAGTGATTTAGAAGAGGACTCTACATTGTGTCATGCTAAACTGACTTGTTCTGTTAAAGGACATGTTTTGTGAAGATTCTGGAATTTGTTccgtcttttaaaaatattgtctgCGAGAATGCCTGCAttaactcattaaaaaaaaaaacattttcaacatcCA
>XM_043248971.1
TTGGCAGGATAAGCAGCACACTGCAAGCTACAGTGATGGGCTGCTTTTGAAAAGACACAAATACACTTCAGTCGTAAATAGTAGCGATTAAACTTAACAGATCCACAAGGACCTCCCGAATCTTGAATTTAACAGTATTGACAGAATGACGAGAAAAGGTTGGGATGAGGAGCCCTTGGATCATGCTGTAAAGTCACAGTAAAACAAGGTTGTTTCTTCAGTATTTACCTGATACTTGTACAATGGCATCAAGAAATGAAATTCAAGATATTTACTGAACTTTAGGTTAAGTGGTGAAAGCTTTGGGACCGTCAGCGCTTCTTGTAGCGGGGAGTGAGCTGGCCATGTCAGGGGTCCCAACCCCTCCTCCTCCAGGGGAGATGTCCAGTGGGCCTGTGGCGGAGAGCTGGTGCTATACCCAGGTCAAGGTAGTGAAATTTTCCTACATGTGGACCATAAACAACTTCAGCTTCTGTCGAGAAGAGATGGGTGAAGTATTGAAGAGCTCTACATTCTCCTCAGGGCCTAATGATAAGATGAAATGGTGCCTACGGGTCAATCCGAAGGGACTGGATGATGAAAGTAAAGATTATCTATCACTATATTTGCTACTAGTTAGTTGTCCAAAAAGTGAAGTCAGAGCCAAGTTCAAGTTTTCTTTACTGAACGCTAAACGGGAGGAGACAAAAGCTATGGAAAGCCAAAGAGCCTATCGGTTTGTCCAAGGCAAAGACTGGGGCTTCAAAAAATTTATTAGGAGAGATTTTCTGCTTGATGAAGCAAATGGGCTGCTACCAGATGATAAACTCACGTTATTTTGTGAGGTAAGCGTTGTCCAGGACTCTGTGAACATCTCCGGACAGTCCAACATGAACATGTTGAAGGTTCCGGAGTGCCAGCTGTCCGACGACCTGGGTAACTTGTGGGAATGCTCACGCTTCACGGACTGCACTCTATATGTGGGAGGCCAGGAGTTCAAAGCCCACAAATCCATCCTGGCAGCAAGATCACCGGTCTTTAATGCCATGTTTGAACATGAAATGGAGGAAAGTAAAAAGaACCGAGTTGACATCAGTGATGTTGAACCGGAGGTTTTCAAAGAAATGATGGGCTTCATATACACAGGAAAAGCACCAAATTTAGAGAAAATGGCTGATAGTTTATTGGCCGCAGCGGATAAATACGCTCTGGAGCGCTTAAAGGTCATGTGTGAGGAAGCCCTTTGCAACGGCCTCTCGGTGGAGAACGTGGCAGACACCCTCATCCTGGCCGACTTGCACAGCGCAGAGCAGCTCAAAGCACAGGCCATAGATTTTATCAACAGGTGCAGTGTCCTCCGACAGCTGGGCTGTAAAGATGGGAAAAACTGGAATAGCAATCACGCCACGGACATAATGGAGACCGCGGGCTGGAAGTCAATGATCCAGTCTCATCCTCACTTAGTGGCGGAGGCTTTCCGCGCGCTCGCGTCAGCGCAGTGCCCCCACTTCGCTCTGCCAAGAAAGCGCCTAAAACAGTCGTGACGACGTTCCCGCTGCTCTCTTGGGCCAGAAAACTGCGGCGTTTAGACTATCCCATTGTCATCCGACCCGACAGCACGTGACTGGGACAGGCTGGCTTCTGAACGGCAGCGAAAGCCGTTCACACCCTTCCTGAGCGATGGGTTCGGCATCTGAGCTTTATTTTGCGAATCTTTCTGTCACTTCAAACAGCCTTAAACTATCTGCCATGACTCTTGTGTGGAGTATTTGAATTCTCTCAGTTCTACTCTGTGCCTGCCTTGTCCCATGAGACCAGGCCTCTTCCCTGTTGCACTAGTTCCCAAAGTCTCGCTGTTTTATATGGCGCTTCCTAGGAATGTGTCAGAAGTTCGATCCACGGGAAATAGTATATATTCCTAATGTTTAGTTGTGCGACTagacattaattaaatgttaacacAATGAGTGCAAGGTCATTTCTTTACACTTTTTGAAAAGATAGCTATGCCCCATATTGATGGCACGATTTCTATGTAAAGACACGGTTAAACCACGGGGAGGGGAGGAGAGAGTACTAGTACTATTCCATActgtgggggaaaaaagcatttcagaTATTTGTATTGATGTGTGTGACAAGGAATTGTTGTTTGTGTCCTGCCCCTTGACctgtgaaaacatttaaagtgtcaTCTATTCACAATTTTACAAGCGACTACATTTTTAGACACGATAGCGTTGCTTCCCTTCAATTGGTCTGCCATATACAGACAAGTAGTTTGAAGTTGTCTGGCCcataatgcatttgtgtatCCTGATTGAACTAGACAATCCATCTTTAAACACATTGTCCTCTGTGATCAGGAAATGTTTGGATGCTGAGCATCAGAGTGTGGCATATGGATGAACTGATGAATGTGTTTGAGAGGTACAGATAGATTGATTGTCATCGATCTATCAGAGATTTGTTTTGAGCTGTGGCGTTACAGTCCAATTGACAGTGATTTAGAAGAGGACTCTACATTGTGTCATGCTAAACTGACTTGTTCTGTTAAAGGACATGTTTTGTGAAGATTCTGGAATTTGTTccgtcttttaaaaatattgtctgCGAGAATGCCTGCAttaactcattaaaaaaaaaaacattttcaacatcCA

Function

symbol description
spopla Predicted to enable ubiquitin protein ligase binding activity. Predicted to be involved in negative regulation of protein ubiquitination; proteasome-mediated ubiquitin-dependent protein catabolic process; and regulation of proteolysis. Predicted to be part of Cul3-RING ubiquitin ligase complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human SPOPL (speckle type BTB/POZ protein like).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0031397 negative regulation of protein ubiquitination biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component

KEGG:

id description
K10523 SPOP; speckle-type POZ protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248969.1 True 2693 mRNA 0.45 13 9601986 9610746
XM_043248970.1 False 2566 mRNA 0.45 12 9601986 9610746
XM_043248971.1 False 2642 mRNA 0.45 12 9601986 9610746

Neighbor

gene id symbol gene type direction distance location
hnmt hnmt,LOC107751616,LOC107720324,LOC107663827,LOC107658225,LOC107577691,LOC107558040 coding upstream 27232 9570400 ~ 9574754 (+)
chpfa chpfa,LOC107749870,LOC107663851,LOC107571864,LOC107672254,LOC107743933 coding upstream 624987 8966861 ~ 8976999 (+)
umps umps coding upstream 770084 8827690 ~ 8831902 (+)
itgav itgav,LOC107663834,LOC107672211,LOC107752904 coding upstream 777595 8801297 ~ 8824391 (+)
zc3h15 zc3h15,LOC107562108,LOC107663835,LOC107749874,LOC107752875,LOC107672221 coding upstream 804051 8793317 ~ 8797935 (+)
LOC122351877 ugt1a7,ugt1a5,ugt1a6,ugt1a2,LOC107663839,LOC107556441,LOC107732349,LOC107658228,LOC107658227,LOC107558044,LOC107720327 coding downstream 17868 9628614 ~ 9652625 (+)
LOC122351880 ugt1a4,LOC107663839,LOC107556441 coding downstream 22407 9633153 ~ 9636711 (+)
LOC122351879 LOC107558046,LOC107658227,LOC107558044,LOC107720327 coding downstream 26645 9637391 ~ 9639325 (+)
LOC122351881 ugt1a2,LOC107663839,LOC107732349 coding downstream 28631 9639377 ~ 9641034 (+)
LOC122351878 LOC107558046,LOC107658227,LOC107558044,LOC107720327 coding downstream 31951 9642697 ~ 9650909 (+)
G68908 NA non-coding upstream 26332 9575421 ~ 9575654 (+)
G68901 NA non-coding upstream 189251 9255332 ~ 9412735 (+)
G68900 NA non-coding upstream 360599 9240938 ~ 9241387 (+)
G68897 NA non-coding upstream 407683 9180904 ~ 9194303 (+)
G68896 NA non-coding upstream 417418 9180751 ~ 9184568 (+)
G69003 NA non-coding downstream 279905 9890651 ~ 9891580 (+)
G69028 NA non-coding downstream 444750 10055496 ~ 10056501 (+)
G69031 NA non-coding downstream 450312 10061058 ~ 10061611 (+)
G69032 NA non-coding downstream 450939 10061685 ~ 10061887 (+)
G69033 cx45.6,LOC107663873,LOC107748213,LOC107572527,LOC107655501,LOC107720145,LOC107600426 non-coding downstream 451462 10062208 ~ 10062436 (+)
thsd7ba thsd7b,thsd7ba,LOC107663893,LOC107751610,LOC107720322,LOC107658187,LOC107658188,LOC107558036 other upstream 34989 9443125 ~ 9566997 (+)
LOC122351827 LOC107568346,LOC107676221,LOC566927,LOC107706103,LOC107706102,LOC108412955 other upstream 441165 9156045 ~ 9160821 (+)
si:ch1073-416j23.1 si:ch1073-416j23.1,LOC107749868,LOC107663920,LOC107556448 other upstream 451893 9142592 ~ 9150093 (+)
fev fev,LOC107749901,LOC107562104,LOC107663906,LOC107672289,LOC106581833 other upstream 730353 8867097 ~ 8871633 (+)
cryba2b cryba2b,LOC107749902,LOC107562110,LOC107663929,LOC107566327,LOC107560461,LOC107672280 other upstream 735681 8863387 ~ 8866305 (+)
piga piga,LOC107748211,LOC107555234,LOC107663925,LOC107655498,LOC107600385,LOC107720146 other downstream 481604 10092350 ~ 10113356 (+)
si:dkey-100n23.5 LOC107748207,LOC107555230,LOC107720121,LOC107655523 other downstream 556590 10167336 ~ 10174783 (+)
il1rapl1a il1rapl1a,LOC107655515,LOC107600393,LOC107663843,LOC107555221,LOC107706095 other downstream 717985 10328731 ~ 10395230 (+)
creb1b creb1b,creb1,LOC107598164,LOC107738506,LOC107698524,LOC107663917 other downstream 1410990 11021736 ~ 11030409 (+)
LOC122352020 uggt2,LOC107600415,LOC107720140,LOC107663813,LOC107655477,LOC108430493,LOC107706079,LOC108266228 other downstream 1854858 11465604 ~ 11490149 (+)

Expression


Co-expression Network