slc38a11 (slc38a11,LOC107674763,LOC107677901)



Basic Information


Item Value
gene id slc38a11
gene name slc38a11,LOC107674763,LOC107677901
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 24029509 ~ 24038130 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043248992.1
GCGAAAGAACGAGGCGCTCGAGCCCGTGCGGCGGGACGTCTCAGAGCCCCGGTTTTTAATGGAGAACCGCAGACGAGAAAAAGCGGCGCGGATCAACAGATGGACGGGGACAGGGACCGCTTGCTGTCTTCGCGCGAGGACGTGGGGAAAAGCGGAACCAGTTCAATATCCTCCGCCTCGTTTAATTTCATCAACTCCATTATAGGATCTGGAATTATAGGTAACGGTTTGCCGTACTCCTTGAGTCAGGCCGGTCTCCCGATGGGTCTCCTGCTGCTTCTTCTGGTGGCTTTCATCACAGATTACTCCATCATCCTGCTGATCAGAGCAGGCAATCTGTCCGGGACTCACAGCTATCAGTCTCTGGTTCAAAGCACGTTTGGCCAGATAGGATACTTGATGGTGTCGGCTCTACAGTTTCTTTACCCGTTTATCGCAATGATCAGCTACAACATCAACGGCGACACTCTGACCAAAGTGTTCACGAGAATTCAAGGAGttGGTCGAAACGTTCTTGCAGAGAGACATTTCGTAATAATGATGTCCACTCTTCTGTTCACTCCGCTCTCTCTCTACAGAGACATAGCAAAGCTGGGAAAGGTATCTTTATTGTCCACTTTGACTCTTGCCATCCTCGTCACAGTGGTCGTGAGAGCGGCGACACTAGGACCACAGATACCGGCGTCAGACGGCGCATGGGTGTTCGCGCGGTGGAATGCGATCCAGGCAGTCGCCGTCATGTCTTTCGCTTTCATCTGCCACCACAACAGCTTCATGATCTACGGGTCGCTGCGGGAGCCCACGCTGAGCGGCTGGTCTCTGGTCACTCACGTGTCCGTGGGCTCGGCCGTGATGGTCAGCGCTGTCTTCGCTGCCGCGGGATATGCCACTTTTACTGGTTACACGCAAGGCGATATATTCGAGAACTACTGCAGGAATGATAACTTGGCTACATTCGGCCGATTCTGCTATGGCGTCAGTATAATCACCACCTTCCCTCTGGAGTGCTTTGTAACCCGTGAGGTGATCTCCAACGTGTTTTTTAAAGGAGAGCTCAGTACGACGGCGCACGTCTTCATTACCCTGGTGATCGTGTCGGCGGCGACCGTCATATCGCTCTCCTACGACTGTCTGGGCATCGTCCTGGAGCTGAACgGGGTTTTGAGCGCCATACCCCTCATGTTCATCTTCCCCGCCGCCTGCTTCCTGAAGCTCTCGGACGGCCGCTGGTTTCGCGGGGAAAACCTCATCCCCAGCGTCATCCTGGCGGTGGGCGTTTGTGTGATGATGATCGGTTTGATCATGATGGTGCTCTTCCCTCAGGACTGTTCGCACGGAGCGGAGATGTTCTACTGCACCGTCTCCAACACCTCCGCTCCCAGCACCATCTCACCGAACAGCGGGCTCCAGTTTATTAACGCCACAGCGTTTTCTGACCGACGTTAACTACGCCGTTTTCACTGGAATCTTTTTCTGTGCTGTTTTCTAGCGATTCACTGTTGAAGCAATTCTTGTATTAAAGAAACGACATAATAGCTACAGTAGTTATTTTTCACGTGAGGCGCTTTCTACGTTCTTGCTTTACGTTCCCGCCATTTCTCGGTTGAAGACTGTAAACGTATAAAGGCAGAAACGCATGCCATCTGAAACCATGTAGTAGCTTTTTGTATGGAACGGACCAAAATTGAAATAAACCTTTACTGAAGGTAATGTGCAGCTGACAAAAAATTTCAGTTTTGCacataaagctaaaaaaaaatgagttatgtagatatttattgatattagtCACTACTAGCCTGTGTCCCAGAggttatcaaaacattttttttcatgtaatattaaGGACATATAGCTTTTATCATGCTTTCCTCCCCCTGAAAAtccattataaaaacacacattttatgtttaaatctGTAATTCTGTAAATAACTTgcagttacataaaaaaaaaacttttggacTTGCTAATgacatgctaatcatgctaacaaCATGCTAATGATGCTAGTCACTTGACAAGCATGATAGAGACATGCTAGCCATGCTTACAACGTGCTAGTAACATGCTAATcgtgctagcgacatgctagtgtTAAGcaggcatatctttaaatcagAATGCCATGAAGACTTTGTACGGAAACAGCCAATCATCAATCACCATTGACGCTTcctagccacgccctagcaaccattatcaaacaacctagcaaccaaACCCTAAACTGACATATCTTCAAAAccgaacgtcacagagacatgggggtgggctcgtttgactcggggcagcagaCAGCTAATCGTGAACCACTTCACGTGACTTTTCCTAGCCACGCCCTAGCGACCACTATCAATGACCTTAGCAACCCAAGCCCACACAGGCATACTTCAAGTCTGAATGTCttagagacatgggggttggtttatatcattcataatGACAAGCAGTCTTTAGTGTATCATGATGGTCAGCTGCCGATCCACTTACTATCAACAAAACAATGTACCCTAGCAACCGattagcaagacctatatctcTGCATCACGATATCGTATAGACATGGGAATTGGTTCTTCTGACTTGTGTTAGCAAACTGGACTTCAGATGTGTTAGTATTGCTAGCAGTACTACATGCTAACAGCGACTAGCTATATGCTCATTCATGATGAGACCTCTATAAAACTCAATAGTAAGTAGCAACCGAgtgcgagttttgccacggcaagcaccactcacattttcttcaggaaatgtacatTCTAGTTTagtcaaattatgcaaaaaatgtgAAGGTATGCTTTCACTTTTTTGTATGCTacatatgcattttgtttaacaGATACTCAATTtaatcaatgcaaaaaaataaataaaaaaatcctataaCTGTCACCGCATGTTATTGTCAGAGTTTGttatgtttcagaaaaagcaaAGTAAATCCTCCCACCTGTTGTCGGGTTATATTAATTGGTCAAACAGGCTAACCTAGCTAGCGTGTGTTTAGCGTGGCGTGCTGATATGAAACCACGAGACTCGACTCGCAAACAAAATGTTTCGAGGCTCATAAGCAGTAGAACTGACACTTCACTAAAAAACTGAATTGAGTAGAATTGTTATTAGTTCGTCGTGTATTTCATCCTGAGCGCTTCGCCACACGACCCAAATCTGAAGGGCACTGAAACGCTGAAGGCAACTCTTTTGAGTCGATTTGTGACTAAATAAAATGTCGTCAGCTATCGTTGCATAGTCAAATATATTCTTCAGAAGCTTTCCTTGCAAGACAGCATGAAGGTGAGCGTCAACAGAAATGCTTTCTTTCCCCCTTTATCTATATAAACAATGTACCGATGATAATTAGCGCTAGATGTC

Function


symbol description
slc38a11 Predicted to enable amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport. Predicted to act upstream of or within amino acid transport and sodium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC38A11 (solute carrier family 38 member 11).

NR:

description
putative sodium-coupled neutral amino acid transporter 11

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0006865 amino acid transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14997 SLC38A11; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 11

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043248992.1 True 3379 mRNA 0.46 16 24029509 24038130

Neighbor


gene id symbol gene type direction distance location
cobll1b cobll1,LOC107674769,LOC107755205 coding downstream 395 23981970 ~ 24029114 (-)
LOC122351750 igfbp2b,LOC107601376,LOC107719878,LOC107656525,LOC107739679,LOC107688948,LOC107567301 coding downstream 110857 23914681 ~ 23918652 (-)
LOC122351749 NA coding downstream 312454 23716109 ~ 23717055 (-)
LOC122352061 igfbp5b,LOC107656526,LOC107719877,LOC107601375,LOC107739616,LOC107567302 coding downstream 379949 23564379 ~ 23649560 (-)
gjc4b cx43.4,LOC107704825,LOC107741582,LOC107601378,LOC107688946,LOC107739588 coding downstream 603075 23419262 ~ 23426434 (-)
csrnp3 csrnp3,LOC107674773,LOC107722915,LOC107755203,LOC107677900 coding upstream 104536 24142666 ~ 24193802 (-)
stk39 stk39,LOC107707604,LOC107708317,LOC107558608 coding upstream 387396 24425526 ~ 24482087 (-)
spc25 spc25,LOC107707602,LOC107564152,LOC107677909,LOC107708316,LOC107674771,LOC107566753 coding upstream 491542 24529672 ~ 24533048 (-)
abcb11a abcb11a,LOC107677906,LOC107674755,LOC107564151,LOC106581787,LOC107744834 coding upstream 495747 24533877 ~ 24558743 (-)
lrp2a lrp2a,lrp2 coding upstream 533732 24571862 ~ 24667167 (-)
G72929 NA non-coding downstream 48271 23926223 ~ 23981238 (-)
G72927 NA non-coding downstream 115623 23912173 ~ 23913886 (-)
G72923 NA non-coding downstream 117473 23911453 ~ 23912036 (-)
G72918 NA non-coding downstream 395432 23558753 ~ 23634077 (-)
G72980 NA non-coding upstream 215232 24253362 ~ 24285690 (-)
G72984 NA non-coding upstream 243861 24281991 ~ 24284165 (-)
G73077 NA non-coding upstream 474964 24513094 ~ 24521308 (-)
G73084 rdh1,LOC107566765,LOC107744825,LOC107674762,LOC106581784 non-coding upstream 526751 24564881 ~ 24571112 (-)
G73160 NA non-coding upstream 701196 24739326 ~ 24745938 (-)
grb14 grb14,LOC107722903,LOC107558602,LOC107677902 other downstream 69184 23943985 ~ 23960325 (-)
G72930 LOC107656510,LOC107564128,LOC107744821,LOC107688951,LOC107596585 other downstream 98180 23930207 ~ 23931329 (-)
LOC122351746 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC107601607,LOC106582264,LOC107755361,LOC108443795 other downstream 1518202 22297007 ~ 22511307 (-)
cerkl cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088 other downstream 1805842 22171463 ~ 22223667 (-)
G72363 ttnb,LOC107716993,LOC107698997,LOC107657493,LOC107601612,LOC107714355,LOC108435066 other downstream 2302689 21709288 ~ 21726820 (-)
G72978 LOC107722896,LOC107674757,LOC107558607,LOC107677899,LOC107755197,LOC107600691 other upstream 182392 24220522 ~ 24280708 (-)
G73201 NA other upstream 989455 25027585 ~ 25030965 (-)
G73301 NA other upstream 1310648 25348778 ~ 25349640 (-)
G73300 LOC107577510,LOC107663597,LOC107729051,LOC107728259,LOC107661178 other upstream 1418284 25456414 ~ 25458742 (-)
G73347 NA other upstream 1752387 25790517 ~ 25793056 (-)

Expression



Co-expression Network