LOC122351724 (ttn,ttnb,LOC107657493,LOC107601612,LOC107716993,LOC107698997,LOC107714355)


Basic Information

Item Value
gene id LOC122351724
gene name ttn,ttnb,LOC107657493,LOC107601612,LOC107716993,LOC107698997,LOC107714355
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 20417872 ~ 20421682 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249003.1
GAAAATACAGAGCACTATACTCATTTGATTCTCAAAAACGTAGAGCGCAGACTTAATGGAGGAAAATACAGAATCAGGATCAACAACCATTTCGGGGCTGCAGATACTGTAACTCATGTTGAAATCTTAGataaaCCTGCTAAGCCAGAAGGTCCTCTGGTTCTTGATGCACTATTGAAGAATTCTGTGATTATTAGCTGGAAAGCACCCAAAGATGATGGTGGATCTATGATCACAAATTATATTGTGGAAAAGCGGGAAGACAAGGAAGGAGCAGAATGGGATCTTGTATCTTCATCTATCACTGGCACTTCATGTAGAATTCCTAACCTTGTTGAAAATGAGGGATACTACTTCCGTGTTTCAGCACAAAATCGTTACGGCAATAGTGAATCACTGGAGACTCCTTCTGCTATCCTCATCAAGAGTCAGCTAGAGAGGCCAGGAGCCCCATTAAAACCAGTTGTTTCTGCACTTACCAAAAACTCCTGTGTTGTGTCTTGGAAGCCACCTCTCAGTGATGGAGGCTCTAAAATTAAGAACTACTGTCTTGAAAAGCAAGACAAGAAGAAGGGTGAATGGGTTGCAGTTACGACAGATGAAATCCACCAGACTGTTTATTCTGTCAAGGGCCTGACAGAAGGTGTTGAGTATGAATTCCgtgtgaaatgtgaaaaccTTGGAGGAGAAAGTGATTACAGTGAAGTATCCGACCCTGCCATTCCAAAGATAGATGTTGATGTGCGTGCTCCTGCCTTCAAGGAAGACCTCAGAAACATGAGTGTAAAATTCAAGAGCAATGCAACATTTGTCTGCAAGATAACAGGACAGCCCAAGCCTGTAATAAAATGGTTCAAGCGTGGAAAGGAAATTCAAGCTGATGGCACTAAAATCAAGATACAAGAATTCAAGGGAGGCTACCATCAGCTTGTTATTGCTGATTGTGATGCAGAAGACTCAACTGTATATCAGATCAGAGCAACAAACCAGGGTGGATCCATTTCTGCTACTGTTTCTCTAGATGTTGAAAtcCCTGCAAAGATTCATCTGCCTAAGAATCTGCAAGGAAAGGAAGCTATCCCTGCCCTTCGTGGTGAAGTGGTCAACATCAAAATTCCATTCAGTGGAAAACCAGATCCAGTTATTACTTGGCAGAAGGGACAAGACCTTCTAGATAATAATGGACACTATCAAGTCATTGTCACAAGATCCTTCACATCTCTTGTATTCCAGAATGGAGTAGAAAGGAATGATGCTGGTTTCTATATTGTATGTGCCAAAAACAGATTTGGAATTGACCAGCAAACAGTAGAGCTTGATGTTGCGGATGTGCCTGATCCACCACGTGGCATCAAAGCCAGTGATGTTTCGAGGGATTCTGTAACACTCCACTGGGTAGCACCTGCCAATGATGGTGGAAGTAGAGTAACCAACTATATCATAGAAAAGTGTGCCACCACAGCAGAAAGATGGATTCGTGTTGGCCAGTCTCGTGATACCCACTATACTGTTGTCAATCTATTTGGAAAGACAAGTTACCAATTCCGTGTCATAGCTGAAAATAAATTTGGTCAGAGTGCACCATCTGAGGCAAGTGGACCTGTTGTAACGAAGGAAGACAAATCAAGAGTTCTCAACTATGATGAAGAGGTTGATGACACCAGGCCAGTTTCCAAAACCAAAGCTCCTCACTCAGAGGCTAAGAATGTTCATAACAAGTACATGATTGCTGAAGAGCTTGGCCGTGGACAGTTTGGTATTGTTCACCGGTGCATTGAAACCAGCTCTGAGAAAACTTACATGGCTAAATTTGTCAAAGTTAGAGGTGCAGATCAGGCAATAGTTAAGAAAGAAATTGCAACACTAAATGTGGCACGCCACAAGAACTTCCTCTTACTGCATGAGTCATTTGACTGCCCTGAAGAACTAGTCATGATTTATGAGTTCATTTCTGGTGTGGACATATTTGAACGCCTTGGTACAGCCAATTTTGAGCTCAATGAGCGTGAAGTTGTTAACTATATCAGACAAGTATGTGAAGCTCTTGAATTCCTTCACAGCAAGAGTTATGGCCACTTCGATATCAGGCCTGAAAATATAGTCTACACCACAAGAAAGGGAACTAATGTCAAGATCACTGAGCTTGGACAGTCTAGACACCTTACACCTGGTGACCAAATTAAGATTCAGTACATGACAGCTGAGTTTGCAGCACCAGAAATTCATCAGAATGAGATGGTTAGCACCGTGACAGATATGTGGTCTGTCGGTGTCCTTGTGTATGTTCTTCTTAGTGGACTTAATCCATTTGCCGCTGAAACTAATCAGCAAATGATTGAGAGCATTTGCAATGCTGAGTACAGTTTTGATGACGAAGCCTTCAAGCATATAAGTGTCGAGGCATTAGACTTTGTTGACCGCCTACTAACCAAAGAGCGTAAACATCGTATGACTGCTGCAGAGGCTTTGAATCATCCTTGGCTGACAATGAACTCAGAGCAACTGAGCACTAGGACCATCAAGATTACTCGTCACAAGAGATATTACCAAGCCATGGTTAAGAAAGAATGGAACACTGTTGTCTCATCTGCTCGTATTGCCAGTGGTGGTGCTATCAGAAATCAGCGGGGAGTAACACTCTCTAAAGTCAAGATTGCACCATTTGAACATGGACCAGTTGCAGGACAAATTAAACACAGTGTTGCTGACGAAGGTGATGATATCAAGCTCATTTGCAACATTGATAACTATGATAGTAGCACGGAAGTAACATGGTACTGTGGAGTAAGACAACTAGAAGAAGGTGCTAAATACGAAATTGCTTATGAAGACGGGCTTGCTTCCATAACTATTAAGGCAATCACAAGAACCGATGATGGAACATACAGATGTAAAGTTGTCAATGAGTATGGTGAGGACAGTGCTTATTCTGAGCTCTTTGTTAAAGGAGTAAGATCCTATCGTGAGTTCTACACTGCACGTGTTGTAAAGAAAGTAAAACGCAGAGTTGACACAGCAAGACTACTCCAAAGACCTCCTGAATTTACTTTGCCATTGTGTAACCGCACTGCTTACATTGGAGAGGATGTGCGCTTTGGTGTCACAATCACAGTGCATCCTGAACCACGTGTGATGTGGTTGAAAACTGGTCAAAAGATTATGCCAGGAGATGATGACaagaaatacacttttattagtGATAAGGGCCTGTATCAGTTAGTTATTCACCATCTTGACCCAGATGATGATGCAGAATACACTGTTGTGGCACGGAACAGATTTGGTGATGACAGTTGCAAGGCTCGTCTCACAGTGATACCTCGTCCTGCTCCTGCTGATAACACCTTGAGACCTATGTTCAAACGTGTTCTTGCTAACTTGGAATGCAGAGAAGGCCAGAGTGTACGTTTTGAAATGAGAGTGTCAGGGCATCCTCATTGA

Function

symbol description
ttn Enables several functions, including cytoskeletal protein binding activity; enzyme binding activity; and protein kinase activity. A structural constituent of muscle. Involved in several processes, including mitotic chromosome condensation; myofibril assembly; and protein kinase A signaling. Acts upstream of or within detection of muscle stretch. Located in condensed nuclear chromosome and sarcomere. Implicated in intrinsic cardiomyopathy (multiple) and myopathy (multiple). Biomarker of coronary artery disease and dilated cardiomyopathy.

NR:

description
PREDICTED: LOW QUALITY PROTEIN: titin-like

GO:

id name namespace
GO:0014866 skeletal myofibril assembly biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249003.1 True 3441 mRNA 0.42 4 20417872 20421682

Neighbor

gene id symbol gene type direction distance location
LOC122351723 ttn,ttnb,LOC107698997,LOC107714355,LOC107601612,LOC107716993,LOC107657493 coding downstream 763 20411395 ~ 20417109 (-)
LOC122351553 fkbp7,LOC107562709,LOC107717008,LOC107657501,LOC107584168,LOC107714366,LOC107698996 coding downstream 14173 20401384 ~ 20403699 (-)
tfpia LOC107602164,LOC107728931,LOC107714394,LOC107660650,LOC107584163 coding downstream 122494 20271220 ~ 20295378 (-)
calcrla calcrla,LOC107728927,LOC107657513,LOC107602163,LOC107714396 coding downstream 147340 20248988 ~ 20270532 (-)
obsl1b obsl1b,obsl1,LOC107660652,LOC107602158,LOC107657519,LOC107728922,LOC107714352,LOC107584169,LOC108423904 coding downstream 388067 19997475 ~ 20029805 (-)
LOC122351725 LOC107714355,LOC107698997,LOC107601612,LOC107657493,LOC107716993 coding upstream 1231 20422913 ~ 20426727 (-)
LOC122351726 LOC107698997,LOC107716993,LOC107601612,LOC107657493,LOC107714355 coding upstream 5045 20426727 ~ 20428717 (-)
LOC122351552 LOC107698997,LOC107562717,LOC107716993,LOC107601612,LOC107657493,LOC107714355,LOC108435066 coding upstream 14063 20435745 ~ 20436901 (-)
LOC122351543 glsb,LOC107660591,LOC107728921,LOC107602138,LOC107714384,LOC107657529,LOC107565021 coding upstream 26422 20448104 ~ 20477733 (-)
col5a2a LOC107584152,LOC107657512,LOC107714354,LOC107717009,LOC107699008,LOC107562716 coding upstream 272878 20694560 ~ 20718541 (-)
G71924 NA non-coding downstream 28173 20378652 ~ 20389699 (-)
LOC122351563 NA non-coding downstream 115436 20296930 ~ 20302436 (-)
G71919 LOC107728915 non-coding downstream 199825 20215420 ~ 20218047 (-)
G71727 NA non-coding downstream 476325 19887175 ~ 19941547 (-)
G71732 NA non-coding downstream 495181 19916199 ~ 19922691 (-)
LOC122351562 NA non-coding upstream 12434 20434116 ~ 20434969 (-)
G71940 NA non-coding upstream 82586 20504268 ~ 20508702 (-)
LOC122351561 NA non-coding upstream 180302 20601984 ~ 20602557 (-)
LOC122351564 NA non-coding upstream 211011 20632693 ~ 20637422 (-)
G71957 ttnb,LOC108435066,LOC108266290 non-coding upstream 335936 20757618 ~ 20758206 (-)
mfsd6b mfsd6,mfsd6b,LOC107660588,LOC107657524,LOC107714386,LOC107728923 other downstream 524557 19881550 ~ 19893315 (-)
nab1b nab1b,LOC107602153,LOC107660590,LOC107565022,LOC107714351,LOC107657527,LOC107728906 other downstream 565247 19833920 ~ 19852625 (-)
glsb glsb,gls,LOC107660591,LOC107728921,LOC107714384,LOC107657529,LOC107602138,LOC106531437 other downstream 588397 19796252 ~ 19829475 (-)
ankar ankar,LOC107728908,LOC107660654 other downstream 686078 19719942 ~ 19731794 (-)
LOC122352185 NA other downstream 1847990 18569755 ~ 18569882 (-)
G71938 nab1,LOC107565022 other upstream 67482 20489164 ~ 20503890 (-)
G72363 ttnb,LOC107716993,LOC107698997,LOC107657493,LOC107601612,LOC107714355,LOC108435066 other upstream 1287606 21709288 ~ 21726820 (-)
cerkl cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088 other upstream 1749781 22171463 ~ 22223667 (-)
LOC122351746 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC107601607,LOC106582264,LOC107755361,LOC108443795 other upstream 1875325 22297007 ~ 22511307 (-)
G72930 LOC107656510,LOC107564128,LOC107744821,LOC107688951,LOC107596585 other upstream 3508525 23930207 ~ 23931329 (-)

Expression


Co-expression Network