LOC122351730 (ttnb,LOC107657493,LOC107714355,LOC107698997,LOC107601612,LOC107716993)


Basic Information

Item Value
gene id LOC122351730
gene name ttnb,LOC107657493,LOC107714355,LOC107698997,LOC107601612,LOC107716993
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 20747875 ~ 20750613 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249007.1
GAAAAACATAACTGGAATAACAACTGAAAACATCAAAGTCATCATTCTTTcCAAACCTGATGAACCTCAAGGACCCATACGATTTGATGATGTTGATGCAACATCAGTCACAATAAGCTGGGATCCACCTATGAGAGATGGTGGTGCACCAATTAGCAACTATGTGGTTGAACAACGTGATGCCCATCGCCCAGGATGGGTGCCTGTGTCGGAATCAGTTTCTAGACCAATATTCAAATTTGACAGATTGACAGAGGGCGATGAATATGTGTTCCGTGTTGCAGCAACCAATCGCTATGGCACTGGGGATTACTTACAGTCAGAAATCGTAATGTGCAAGAGCTccaaatCCATTCCTGGGCCACCTGGAAGACCCATTGTATTTGATGTATCACGTGATGGCATGACTGTTGCATGGGAACCACCAGATGAGGATGGAGGCTTAGAGGTGTCCGGCTACATTATTGAACGCAAGGAGGTCAGGTCAGATAGATGGATCCGTGCTAATAAAAATCCAGTGACAATGACAAGATACAGGTCCACTGACTTAATTGAAGGCCTGGAATATGAACACAGAGTGACAGCCATTAATGCTCGTGGTGTCGGCAAACCTAGCCTTCTTTCTAAACCAGCAGTAGCAACTGATCCTGTTGATCCACCTGGTTCACCTCAAAACCCACGAGTCACAGATACCACAAAATCTTCTGTGTCTTTGGCCTGGAGTCCCCCAGATGAGGAGGGTGGTGCTAAGGTTACAGGCTATCTAATTGAGATGCAAAAGGTTGGTTCAGTAACCTGGATGAAGTGCAACGCTACACCTTCACTGATCTGTGAATATACTTTGACACGAATGCCACAAGGAGAAGAATTCAAATTCCGTATTATGGCTTGCAATGCGGGTGGACCAGGAGAACCAGCTGAAGTACCAGGAGTTGTGACTATAACAGAGATGCTTGATCCTCCAAGTTATGATCTTGAAGCAAAATACAAGGATGTCCTTGTAGTCAGATCCAGAGGAGTAATCAGACTTTCAGTGCCCATCAAAGGCAAACCTACTCCTACCTGCAAATGGACCAAGGATGGATCAGAGGTTACCAACCGTGCAATGATTGCCTCCAGTGAAGATGTATCAGAGCTTGTAATCAAGCTAGCTGAAAGGTCTGATTCTGGTCTTTACCATCTCCATCTGGAAAACAAGTGTGGCAAAAAGATGCTTCCAATAAAGGTCAAAGTTATTGGCCGCCCATCTGCACCTGAAGGCCCTCTTAGATTTGATGATATACAAGCACATTCTGTAAAAGTTAGCTGGAAACCACCAACAGAAGATGGTGGTTCCGAAATTGTTGGCTACATTGTGGAAAGACGTGAAGAAACAAAAGCAGCTTGGTACACGGTTGATTCGCGAGTGGTTGACACATCCCTTGTAGTTAAGGGACTACAAGAAAATGCAGAATATCACTTTAAGGTGACAGCAGAGAACCAGTTTGGAATAAGCAACTCCCTGAAATCAGAGACAACTATTGTACCAAAGACTCCTATTTGTGTCCCAGAGGCTTCAGGTACTCCACCAGAAATTATGGATGTTACTAAGAATTCTGCGGCTTTGGCTTGGACAAAACCTAAAGATGATGGTGGATCTTGCATTACTGGTTACTATATTGAGTACAAAGAAGTGTCATCTGATAAGTGGATTCGTCATGAGACAAAGATCACCTCAACGATGTACACTCTTAGTCAACTCACTACTGATTCCGAATATCAGTTCCGTGTTATTGCTGTGAATGACATTGGAGCTAGTGAACCAGGACCTGCATCAGATTCAGTAATATGCAAAGATCCATTTGATAAACCAAGCCAACCTGGAGAAATTGACACTATGACTGTTACCAAAGACTATATTACAATTAACTGGGAGGCTCCAGCATGTGACGGTGGCAAACCAGTCCTTGGCTACTGGATTGAATACCGAAAGTCTGGAGAGAGTGCTTGGAAGAAATGCAATAAGGAGCGCACAAAGGACAAACAGTACACTCAGGGTGGTTTACAAGAGGCAACTGAATATGAATTCAGAGTATTTGCAGAAAATGAAACCGAATTAGCAGACCACGCAGAACAGCAACTGGCATCAAAACTAAACTGGGTGGTAAGTATGGTTTGA

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: titin-like

GO:

id name namespace
GO:0014866 skeletal myofibril assembly biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249007.1 True 2158 mRNA 0.44 7 20747875 20750613

Neighbor

gene id symbol gene type direction distance location
LOC122351538 ttn,ttnb,LOC107698997,LOC107716993,LOC107657493,LOC107601612,LOC107714355 coding downstream 1005 20737023 ~ 20746870 (-)
LOC122351555 fkbp7,LOC107562709,LOC107717008,LOC107657501,LOC107584168,LOC107714366,LOC107698996 coding downstream 16098 20729340 ~ 20731777 (-)
col5a2a LOC107584152,LOC107657512,LOC107714354,LOC107717009,LOC107699008,LOC107562716 coding downstream 29334 20694560 ~ 20718541 (-)
LOC122351543 glsb,LOC107660591,LOC107728921,LOC107602138,LOC107714384,LOC107657529,LOC107565021 coding downstream 270142 20448104 ~ 20477733 (-)
LOC122351552 LOC107698997,LOC107562717,LOC107716993,LOC107601612,LOC107657493,LOC107714355,LOC108435066 coding downstream 310974 20435745 ~ 20436901 (-)
LOC122351731 ttnb,LOC107698997,LOC107714355,LOC107657493,LOC107716993,LOC107601612 coding upstream 39 20750652 ~ 20751262 (-)
LOC122351558 LOC107716993,LOC107698997,LOC107601612,LOC107714355,LOC107657493 coding upstream 656 20751269 ~ 20752980 (-)
LOC122351732 ttnb,LOC107657493,LOC107714355,LOC107601612,LOC107716993 coding upstream 5283 20755896 ~ 20757113 (-)
LOC122351733 ttnb,LOC107698997,LOC107716993,LOC107657493,LOC107601612 coding upstream 9433 20760046 ~ 20761027 (-)
LOC122351738 ttnb,LOC107698997,LOC107714355,LOC107657493,LOC107601612,LOC107716993,LOC107562704 coding upstream 19132 20769745 ~ 20771153 (-)
LOC122351564 NA non-coding downstream 110453 20632693 ~ 20637422 (-)
LOC122351561 NA non-coding downstream 145318 20601984 ~ 20602557 (-)
G71940 NA non-coding downstream 239173 20504268 ~ 20508702 (-)
LOC122351562 NA non-coding downstream 312906 20434116 ~ 20434969 (-)
G71924 NA non-coding downstream 358176 20378652 ~ 20389699 (-)
G71957 ttnb,LOC108435066,LOC108266290 non-coding upstream 7005 20757618 ~ 20758206 (-)
G71981 NA non-coding upstream 442452 21193065 ~ 21193278 (-)
G71984 NA non-coding upstream 455602 21206215 ~ 21206762 (-)
LOC122351567 NA non-coding upstream 482573 21233186 ~ 21245785 (-)
G72024 NA non-coding upstream 678515 21429128 ~ 21430341 (-)
G71938 nab1,LOC107565022 other downstream 243985 20489164 ~ 20503890 (-)
mfsd6b mfsd6,mfsd6b,LOC107660588,LOC107657524,LOC107714386,LOC107728923 other downstream 854560 19881550 ~ 19893315 (-)
nab1b nab1b,LOC107602153,LOC107660590,LOC107565022,LOC107714351,LOC107657527,LOC107728906 other downstream 895250 19833920 ~ 19852625 (-)
glsb glsb,gls,LOC107660591,LOC107728921,LOC107714384,LOC107657529,LOC107602138,LOC106531437 other downstream 918400 19796252 ~ 19829475 (-)
ankar ankar,LOC107728908,LOC107660654 other downstream 1016081 19719942 ~ 19731794 (-)
G72363 ttnb,LOC107716993,LOC107698997,LOC107657493,LOC107601612,LOC107714355,LOC108435066 other upstream 958675 21709288 ~ 21726820 (-)
cerkl cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088 other upstream 1420850 22171463 ~ 22223667 (-)
LOC122351746 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC107601607,LOC106582264,LOC107755361,LOC108443795 other upstream 1546394 22297007 ~ 22511307 (-)
G72930 LOC107656510,LOC107564128,LOC107744821,LOC107688951,LOC107596585 other upstream 3179594 23930207 ~ 23931329 (-)
grb14 grb14,LOC107722903,LOC107558602,LOC107677902 other upstream 3193372 23943985 ~ 23960325 (-)

Expression


Co-expression Network