pla1a (LOC107724500,LOC107668900,LOC107569279,LOC107712265,LOC107597373)


Basic Information

Item Value
gene id pla1a
gene name LOC107724500,LOC107668900,LOC107569279,LOC107712265,LOC107597373
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14595394 ~ 14602797 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249033.1
CAGTGGAAagatcatttgtttttcattgtagTCAAAACCCAGAAGAATTATCCACTAGCTACTGCTATCACAGGATGGAAACTGGGAATTAATACCTCTCATGCTGACATGGTTTATAACAACACACCAGGAATGAAAGGAATAACAATTCATATCACCTAATCGGATATTGAAGCATTTTTCTTGGAACCAGGCATTGTGTAACAGATTGTGGCTGGATATTAAGTGGATTCCAGACTTCTTAGGAAACATCTCACTCAGCTGATTTCATCATGTTGATCAACAAAGCCAAAGCTTGGAAATGGATCAAggcttttgtttatttgtcagtGTGCATCACCTCTGCTGTGGGTAATGAGGAAGCATCCCAAAAGTGTGCAGACTTCAACAACACAGCTTGGCTAGAATACAGACAGGGCTCCAAACTCCAGGTACAGTACCTTCTTCTTACACGAAAGAATGTAGACTGCGCCAGCCTCTTCACACAGGACTGCCTCAACCATACCCAGAAACACACCGCTTACTTCAATTCATCACTCCCCACTAAAGTCATTGTTCATGGATACAGGGCGCTGGGCAGTAAGCCTTCCTGGGTGAGTGGCTTAGCTCAGGCTCTACTGCGGGAAGAGGATGTGAATGTTCTGGTGGTGGACTGGGTCTATGGAGCCTCGTTTGCTTATAACCTGGTGGTAGAGAACTACAAAGAGGTGGCAGTGCAGATATCAGTGCTTATCAATCAGCTTACGAAATATGGAAGTAAGCTGGaatcttttcatttcattggtGTGAGTCTTGGAGCACACGTGTCTGGATTCGTAGGGACCCTGTTTGAAGGCAAACTGGGTCGAATTACagGTCTGGACCCTGCAGGCCCAATGTTCAAGAGTGCTGACCCGTTTGACCGTCTGGATTCGTCTGATGCTTTGTTCGTTGAGGCCATACACACTGACTCTGACTACTTTGGTATATCCATTCCCGTCGGGCATGTGGACTTCTTTTTAAATGGTGGAATGGACCAAGCCGGTTGTGCACGCACAAAGTTTGCTTCAATTTTTATCTACTTTCCAGTGTATGGTTATGTGATTTGTGACCACATGAGGGCACTACATGTCTACATGAGCGCCCTGAACAGCTCGTGTTGGCTTATTGGTTTCCCCTGCTCCAGTTATGAGGAATTCCTGGCAGGAAAATGCGTCACCTGCAAGGGCCCCTTCAATGGCACATGCCCACAAATAGgCTTGTTAAAAAACAGTGGAATAACAGCTAATTCCCTGCCAAATCAAGAGAAGGTGTATCTCCTTACTACTGCTACGGCTCCTTATTGTGCTCATCACATCCTAGTGGAATTAAAGGTTTCCCCTTTAGACAAGACTGCTGATGTTCAGCTTACTCTGATCTCTGTTGGACACCCTGGCACTGAGCTGAAACTCAAactAAATACAGATGAAGTGGTGCACAAAAAAGTGGCTGCACACCCAGAGCAACTGTGTAAAATTGACTCAGTGCAGCTGAAAAACACAGGAGGACTATTCTACAGACAAGGAGATATTCATTTTGAGTATATCTGCATCTCTGAAGTGCCTCAAACAAGAGGGCTGGATCCATTATGTGTGAAGAACATTAATGTTGGGCGGGGAGTGCCATGGTCACATGACTTTGTACAGTTGTGCTAAATTAAAAGAACAACACAATCTACTTAAGAGAGCTTATACAAGTATTAAATTAGTGAGACTCAAGCGAAGGTCACACACTAACACTAGGCTTGGGAGGCATTAAAGCTTAgtgacaaagaaataaataggaTACAAGGGGACTGAAATGCTTAAACTCtgttagatatatttattaatatgatttttgtgcaCTGTTCCAGAGAGTGTTAGTGAGATATCAGAAGAATCAAATCAGTCATTTAACACTGAATAGTTAGTTTATGTATTGTGTATTGAAAGTACTGGTTTATTTccaataattacaatatttggAGTGGTGCAGAATTCAAGgtacatttcaatattttggCACTCTGATTAGCATCTCTAACTGCATTAGTGCCGGGGTGATATATATCGATTGATACATGAACATCACGTCAGTAAAGCCATTTCTTTGATTAGCAATATGTGTCCATCACCTATCCTACACAGAaccgtagatcactgacaagctactcCAGTGATTACTTGTCAATGATCTACGTACGGGTCTGGAGGtttaccgctaatcaaagaactggCTTACGAGATGCGCATTATATATATTGGCCAGCCCTAAACTGCATACTACATTGTTgatattaaaaattcaaatctgttaatttACAATTTGTGATGAACCTCAAGTCACATTTTGAACCCAGCAACAGTTGGCCccatgaaaatacattttcatcctATGGTCTGTGTACAGTCTCAAATCATGGTGCTGATGCATTTACTAACTTCCTATTATGATAACGCACacacttttgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacta
>XM_043249034.1
CAGTGGAAagatcatttgtttttcattgtagTCAAAACCCAGAAGAATTATCCACTAGCTACTGCTATCACAGGATGGAAACTGGGAATTAATACCTCTCATGCTGACATGGTTTATAACAACACACCAGGAATGAAAGGAATAACAATTCATATCACCTAATCGGATATTGAAGCATTTTTCTTGGAACCAGGCATTGTGTAACAGATTGTGGCTGGATATTAAGTGGATTCCAGACTTCTTAGGGTAACTATAGCTGAAGAACAGGagcaaaatgttttgaaaagttGCAGAATGAATTTGCACTCACTGAAGAATTCAACCAGCAGAAACATCTCACTCAGCTGATTTCATCATGTTGATCAACAAAGCCAAAGCTTGGAAATGGATCAAggcttttgtttatttgtcagtGTGCATCACCTCTGCTGTGGGTAATGAGGAAGCATCCCAAAAGTGTGCAGACTTCAACAACACAGCTTGGCTAGAATACAGACAGGGCTCCAAACTCCAGGTACAGTACCTTCTTCTTACACGAAAGAATGTAGACTGCGCCAGCCTCTTCACACAGGACTGCCTCAACCATACCCAGAAACACACCGCTTACTTCAATTCATCACTCCCCACTAAAGTCATTGTTCATGGATACAGGGCGCTGGGCAGTAAGCCTTCCTGGGTGAGTGGCTTAGCTCAGGCTCTACTGCGGGAAGAGGATGTGAATGTTCTGGTGGTGGACTGGGTCTATGGAGCCTCGTTTGCTTATAACCTGGTGGTAGAGAACTACAAAGAGGTGGCAGTGCAGATATCAGTGCTTATCAATCAGCTTACGAAATATGGAAGTAAGCTGGaatcttttcatttcattggtGTGAGTCTTGGAGCACACGTGTCTGGATTCGTAGGGACCCTGTTTGAAGGCAAACTGGGTCGAATTACagGTCTGGACCCTGCAGGCCCAATGTTCAAGAGTGCTGACCCGTTTGACCGTCTGGATTCGTCTGATGCTTTGTTCGTTGAGGCCATACACACTGACTCTGACTACTTTGGTATATCCATTCCCGTCGGGCATGTGGACTTCTTTTTAAATGGTGGAATGGACCAAGCCGGTTGTGCACGCACAAAGTTTGCTTCAATGTATGGTTATGTGATTTGTGACCACATGAGGGCACTACATGTCTACATGAGCGCCCTGAACAGCTCGTGTTGGCTTATTGGTTTCCCCTGCTCCAGTTATGAGGAATTCCTGGCAGGAAAATGCGTCACCTGCAAGGGCCCCTTCAATGGCACATGCCCACAAATAGgCTTGTTAAAAAACAGTGGAATAACAGCTAATTCCCTGCCAAATCAAGAGAAGGTGTATCTCCTTACTACTGCTACGGCTCCTTATTGTGCTCATCACATCCTAGTGGAATTAAAGGTTTCCCCTTTAGACAAGACTGCTGATGTTCAGCTTACTCTGATCTCTGTTGGACACCCTGGCACTGAGCTGAAACTCAAactAAATACAGATGAAGTGGTGCACAAAAAAGTGGCTGCACACCCAGAGCAACTGTGTAAAATTGACTCAGTGCAGCTGAAAAACACAGGAGGACTATTCTACAGACAAGGAGATATTCATTTTGAGTATATCTGCATCTCTGAAGTGCCTCAAACAAGAGGGCTGGATCCATTATGTGTGAAGAACATTAATGTTGGGCGGGGAGTGCCATGGTCACATGACTTTGTACAGTTGTGCTAAATTAAAAGAACAACACAATCTACTTAAGAGAGCTTATACAAGTATTAAATTAGTGAGACTCAAGCGAAGGTCACACACTAACACTAGGCTTGGGAGGCATTAAAGCTTAgtgacaaagaaataaataggaTACAAGGGGACTGAAATGCTTAAACTCtgttagatatatttattaatatgatttttgtgcaCTGTTCCAGAGAGTGTTAGTGAGATATCAGAAGAATCAAATCAGTCATTTAACACTGAATAGTTAGTTTATGTATTGTGTATTGAAAGTACTGGTTTATTTccaataattacaatatttggAGTGGTGCAGAATTCAAGgtacatttcaatattttggCACTCTGATTAGCATCTCTAACTGCATTAGTGCCGGGGTGATATATATCGATTGATACATGAACATCACGTCAGTAAAGCCATTTCTTTGATTAGCAATATGTGTCCATCACCTATCCTACACAGAaccgtagatcactgacaagctactcCAGTGATTACTTGTCAATGATCTACGTACGGGTCTGGAGGtttaccgctaatcaaagaactggCTTACGAGATGCGCATTATATATATTGGCCAGCCCTAAACTGCATACTACATTGTTgatattaaaaattcaaatctgttaatttACAATTTGTGATGAACCTCAAGTCACATTTTGAACCCAGCAACAGTTGGCCccatgaaaatacattttcatcctATGGTCTGTGTACAGTCTCAAATCATGGTGCTGATGCATTTACTAACTTCCTATTATGATAACGCACacacttttgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacta

Function

NR:

description
phospholipase A1 member A-like

GO:

id name namespace
GO:0016042 lipid catabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K13618 PLA1A; phosphatidylserine sn-1 acylhydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249033.1 False 2504 mRNA 0.41 12 14595394 14602797
XM_043249034.1 True 2569 mRNA 0.41 11 14595394 14602797

Neighbor

gene id symbol gene type direction distance location
hcn5 si:rp71-68n21.12,LOC107724451,LOC107712254,LOC107658208,LOC107668864,LOC107569239,LOC108270784 coding downstream 9561 14579283 ~ 14585833 (-)
ska3 LOC107724453,LOC107668865,LOC107569224,LOC107597424,LOC107577924 coding downstream 17122 14574795 ~ 14578272 (-)
LOC122351989 LOC107668905,LOC107569207,LOC107724507,LOC101884374 coding downstream 22335 14569810 ~ 14573059 (-)
lats2 lats2,LOC107724484,LOC107569193,LOC107712271,LOC107658249,LOC107668891,LOC107597418 coding downstream 26260 14552182 ~ 14569134 (-)
xpo4 xpo4,LOC107724474,LOC107668883,LOC107569111,LOC107712270,LOC107597380,LOC107658250 coding downstream 43941 14521398 ~ 14551453 (-)
hsd3b1 hsd3b1,LOC107569293,LOC107658243,LOC107712267 coding upstream 2022 14604819 ~ 14607004 (-)
si:rp71-68n21.9 LOC107724495,LOC107569301,LOC107668845,LOC107597372,LOC107658242,LOC107712264 coding upstream 5286 14608083 ~ 14613939 (-)
hao2 hao2,LOC107724497,LOC107597376,LOC107658196,LOC107712250,LOC107569314,LOC107668850 coding upstream 11929 14614726 ~ 14620909 (-)
wdr3 wdr3,LOC107569352,LOC107712260,LOC107724477,LOC107658238,LOC107668854 coding upstream 146461 14749258 ~ 14758586 (-)
tent5c fam46c,LOC107724489,LOC107668849,LOC107658236,LOC107569365,LOC107597368 coding upstream 180660 14783457 ~ 14789290 (-)
G70396 NA non-coding downstream 52 14594263 ~ 14595342 (-)
G70393 NA non-coding downstream 5119 14589858 ~ 14590275 (-)
G70382 NA non-coding downstream 32402 14477332 ~ 14562992 (-)
G70332 LOC107724468 non-coding downstream 348066 14244287 ~ 14247328 (-)
LOC122352120 NA non-coding downstream 406393 14173817 ~ 14189001 (-)
G70438 LOC107600383,LOC107655530,LOC107720111 non-coding upstream 314003 14916800 ~ 14918840 (-)
LOC122352110 NA non-coding upstream 334327 14937124 ~ 14942863 (-)
G70494 LOC107740907,LOC107668887,LOC107600382,LOC107720110 non-coding upstream 372615 14975412 ~ 14981853 (-)
G70503 zic2a,LOC107600377,LOC107694587,LOC107569553,LOC107681317 non-coding upstream 410560 15013357 ~ 15275841 (-)
LOC122351681 dach1,LOC107668899 non-coding upstream 432022 15034819 ~ 15041730 (-)
LOC122351495 NA other downstream 222720 14359646 ~ 14372674 (-)
G70317 NA other downstream 341618 14196479 ~ 14253776 (-)
G70294 NA other downstream 655526 13938259 ~ 13939868 (-)
rif1 LOC107658288,LOC107555351,LOC107658286,LOC107725242,LOC107680950 other downstream 682451 13879570 ~ 13912943 (-)
G70261 LOC107682829,LOC107723691,LOC107555352,LOC107658202,LOC107555050 other downstream 782067 13807822 ~ 13813327 (-)
G70549 NA other upstream 700306 15303103 ~ 15305975 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other upstream 786421 15389218 ~ 15399437 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other upstream 1168624 15771421 ~ 15771864 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other upstream 2118007 16720804 ~ 16746222 (-)
G70986 pou2f1b,LOC107748141 other upstream 2214343 16817140 ~ 16823775 (-)

Expression


Co-expression Network