popdc2 (popdc2,LOC107724501,LOC107569269,LOC107668901,LOC107597374,LOC107712266,LOC107658244)


Basic Information

Item Value
gene id popdc2
gene name popdc2,LOC107724501,LOC107569269,LOC107668901,LOC107597374,LOC107712266,LOC107658244
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14590473 ~ 14595370 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249035.1
GAGAGCGAGTTCAATTACCATAAGCTAGGGTAGATGAGGAACTGCATTATTTTGATATGACATACATTTTTTCTCAAAGACTATTTCCAGTGATGAAGATAAGAAATTAAGagcaaaatatttaacatttccaGCAGAACCAATAGTAAAGGAAgtcctttttaaaatttttaagtaTATAACTTTCTGAAGAAATGTTAGGACCAAACGGCTTCGATTATAACAACTGGTAATATGTGATCTtggttatatttataaaatacggAACATGCAGCTCAGCTAAGAATAGAATAGGAATAGATTCCTGCATTGTTGTAAGAATGACAGTtaattaatgttgtaaaatacgGGTTAATGACCAGCTGTCCTTagcattttgatatttatggaGTAACATATATAAACGATAGGCAAGAACATTCTGTATTGTGAATGTGCTGTCATGCCTTACAATGCCATTTGGCATGTTACACAACAATATTCTCATAActtatgctaaaataataaaagaaacagaatgcaaacagaacagaaactCCTGCACTCCACTGCCAAGCAGCAAAATATTAACTACCAACAACTGCTGGGCCAAGTTATGTGAAACTACAAAAAGGGATGGCCAGCGAGGGGAGGTAAACAATGTTACATGACCTCCCCTGTTATTTTATCTGTCTCAGATTCTCTAAATATCCCCCCATAGCCTAGGATCCTCCTCCCCTCAAACACCATTAGAAGAGCTGGAGTACAAATTGTCTGTTTGATTGTGAGAAAACGGGCGTTGGTGACATCTGGCAGAGCTTTCAGAGATCTTCACAAACGTCAGTCCATGTCACTTGTTATCGTAATCACTCTGCCCTGCCATTATTGTGTTATGTTAAGTAGCGAGTCTGCTTTCTCTCTGTGGCTCTTTCCTCCTTGGGTTTCAATTCCAAACATGGTTATCCTTCTCAGGGTCTCTATCCCCGCCTCTCCAGCTCAATGTGTCCAACAGTCCAGTGCGTGACGGAACAGAAGCAGAGACGCTTTAGGACTGATATTGTCAAATTCGAAAGGAAAAGTGGGTGTCAACGGAATGGAATTATGAAGCTTCTTTTATTCCAACTATTTTTGGCAGTAAGAGGTGTATTGGCTGTTAGAGGCTGAGGGGAACAATCTTTTTATATCTGACattaattttatgtttctaaCAAACTTTTAACACCTTGGGCTTATGTACCACTACTTTTTATCAACAAGGCTCTTTTTTTGAAATCCATTGAACTGAAGACCACATAGCCATAAACATGAATAGTGGCGACTCTACCTTGATTGACTCTATAATTTACAATCACACACTCTGCGATGGATGGACCAACAGCACAGAAGGTGCCATCTACCATCTGGGTAACACCATTCTTTTTTTGGGCTATATGGGTGGTAGTGGAGCATACGGGGCGCTGTACATCTTCAGCTTTTTGGCTCCTGCTTTCGTCTGTTTGACTCTGTGGGGCTGGTTGACAATGTGTGGCCTTGATGTCTTCCTCTGGAACTTGCTGCTGATGCTGCAGTGTTTGGCCCAGGTGTGTCATCTGATTTTTCGGCTGATGCAGGATGGTTTAGCTAACGAGGAGCTTTCTGCGCTTTACACAGCGGTCTATCTGCCTCTGGATGTACCTGTGCAGGTGTTTAAGGAGATTACGGCTGCCAGTGAGAACAAAGTGCTCTCTCTAGCGGCCGAGGAGACGTATGCTATAGAGGGGAAGACGCCCATTGATCAGttgtcttttcttctttctggcAGgATCAGAGTGTCCTTAGAAGGTCAGTTCCTCCATTATATCTTCCCTCACCAGTTTCTTGATTCTCCAGAATGGGAGTCTCTAAGACCTACAGAAGAGGGCAACTTCCAGGTGACACTGACAGCAGAGACGGACTGTCGTTATATCTCTTGGCGCAGACGTCGGCTTTACCTTCTGCTGTCTAAGGATCGTTACGTTGCCCGACTTTTCTCAGTCATGCTCGGTAGTGACATTGCTGACAAACTGTACTCACTCAATGACAAGCTGTTTGCCAAGAGTGGTGTGCGTCTTGATATCCGTCTGCCCAGTCTCTACCATGTCCTCGCCCCCTCGCCACAGGGCAGTGAGGGTGGCAGTGCTAGTTCACCACCCAGGGGGAGCCAAGGAGATGCTACAGTTGTGCCGATTGATCCAGCCCCATCTAACCGGGGCTTAGATGCAAGAAAAGTCCTTCCAGACATGGGAAAGACCCCAGTGCCCAAACCTCCACATCAACAACCCTCTGACACGGAGATGCCCTTTGGTGAGGATTCAACCAGCTTGGTTCTGGAGGACTTTGCTGATATGACAGGCTCTCTAATGGACTACGGGAGTGAAAGGGATTATTTGAAGTAATAGTTGGGGTGTTGACGCTAACACACTGGGACACTTCTTATAACACAATAAGGTGATACTCCAGGAAGACTTCGATTCCAAAGAGGAGGTGCCCCACTGGCCCCTACTGACACCCCAAAGCTGTAGGAATGGTTTCAGCAATGTAAAGACCATAACATCTGAACGATTCTTCCACCAGAATCACCACTGAATCTGATTCCACTCATACAAATGAAGACAACATTAACACAACGAAcactaaatagatttttttaaaatgtccttttgtTTTGGACAGTGACAGGAGAAGAGATCAAACCTCCCAAAAGAGATACTGTTATATATGATTCCACATTGcacaaaattttcatttgttttggcaTGTGCTTAATACTTAAATCTGTTTGGAATACATGAGACAGGCAAAACGTTAGATTttcaaacacaaattaattttagcAGCACTTCAGATactagttatatatatatagatatatat
>XM_043249038.1
GAGCGAGTTCAATTACCATAAGCTAGGGTAGATGAGGAACTGCATTATTTTGATATGACATACATTTTTTCTCAAAGACTATTTCCAGTGATGAAGATAAGAAATTAAGagcaaaatatttaacatttccaGCAGAACCAATAGTAAAGGAAgtcctttttaaaatttttaagtaTATAACTTTCTGAAGAAATGTTAGGACCAAACGGCTTCGATTATAACAACTGGTAATATGTGATCTtggttatatttataaaatacggAACATGCAGCTCAGCTAAGAATAGAATAGGAATAGATTCCTGCATTGTTGTAAGAATGACAGTtaattaatgttgtaaaatacgGGTTAATGACCAGCTGTCCTTagcattttgatatttatggaGTAACATATATAAACGATAGGCAAGAACATTCTGTATTGTGAATGTGCTGTCATGCCTTACAATGCCATTTGGCATGTTACACAACAATATTCTCATAActtatgctaaaataataaaagaaacagaatgcaaacagaacagaaactCCTGCACTCCACTGCCAAGCAGCAAAATATTAACTACCAACAACTGCTGGGCCAAGTTATGTGAAACTACAAAAAGGGATGGCCAGCGAGGGGAGGTAAACAATGTTACATGACCTCCCCTGTTATTTTATCTGTCTCAGATTCTCTAAATATCCCCCCATAGCCTAGGATCCTCCTCCCCTCAAACACCATTAGAAGAGCTGGAGTACAAATTGTCTGTTTGATTGTGAGAAAACGGGCGTTGGTGACATCTGGCAGAGCTTTCAGAGATCTTCACAAACGTCAGTCCATGTCACTTGTTATCGTAATCACTCTGCCCTGCCATTATTGTGTTATGTTAAGTAGCGAGTCTGCTTTCTCTCTGTGGCTCTTTCCTCCTTGGGTTTCAATTCCAAACATGGTTATCCTTCTCAGGGTCTCTATCCCCGCCTCTCCAGCTCAATGTGTCCAACAGTCCAGTGCGTGACGGAACAGAAGCAGAGACGCTTTAGGACTGATATTGTCAAATTCGAAAGGAAAAGTGGGTGTCAACGGAATGGAATTATGAAGCTTCTTTTATTCCAACTATTTTTGGCAGTAAGAGGTGTATTGGCTGTTAGAGGCTGAGGGGAACAATCTTTTTATATCTGACattaattttatgtttctaaCAAACTTTTAACACCTTGGGCTTATGTACCACTACTTTTTATCAACAAGGCTCTTTTTTTGAAATCCATTGAACTGAAGACCACATAGCCATAAACATGAATAGTGGCGACTCTACCTTGATTGACTCTATAATTTACAATCACACACTCTGCGATGGATGGACCAACAGCACAGAAGGTGCCATCTACCATCTGGGTAACACCATTCTTTTTTTGGGCTATATGGGTGGTAGTGGAGCATACGGGGCGCTGTACATCTTCAGCTTTTTGGCTCCTGCTTTCGTCTGTTTGACTCTGTGGGGCTGGTTGACAATGTGTGGCCTTGATGTCTTCCTCTGGAACTTGCTGCTGATGCTGCAGTGTTTGGCCCAGGTGTGTCATCTGATTTTTCGGCTGATGCAGGATGGTTTAGCTAACGAGGAGCTTTCTGCGCTTTACACAGCGGTCTATCTGCCTCTGGATGTACCTGTGCAGGTGTTTAAGGAGATTACGGCTGCCAGTGAGAACAAAGTGCTCTCTCTAGCGGCCGAGGAGACGTATGCTATAGAGGGGAAGACGCCCATTGATCAGttgtcttttcttctttctggcAGgATCAGAGTGTCCTTAGAAGGTCAGTTCCTCCATTATATCTTCCCTCACCAGTTTCTTGATTCTCCAGAATGGGAGTCTCTAAGACCTACAGAAGAGGGCAACTTCCAGGTGACACTGACAGCAGAGACGGACTGTCGTTATATCTCTTGGCGCAGACGTCGGCTTTACCTTCTGCTGTCTAAGGATCGTTACGTTGCCCGACTTTTCTCAGTCATGCTCGGTAGTGACATTGCTGACAAACTGTACTCACTCAATGACAAGCTGTTTGCCAAGAGTGGTGTGCGTCTTGATATCCGTCTGCCCAGTCTCTACCATGTCCTCGCCCCCTCGCCACAGGGCAGTGAGGGTGGCAGTGCTAGTTCACCACCCAGGGGGAGCCAAGGAGATGCTACAGTTGTGCCGATTGATCCAGCCCCATCTAACCGGGGCTTAGATGCAAGAAAAGTCCTTCCAGACATGGGAAAGACCCCAGTGCCCAAACCTCCACATCAACAACCCTCTGACACGGAGATGCCCTTTGAAGGTGATACTCCAGGAAGACTTCGATTCCAAAGAGGAGGTGCCCCACTGGCCCCTACTGACACCCCAAAGCTGTAGGAATGGTTTCAGCAATGTAAAGACCATAACATCTGAACGATTCTTCCACCAGAATCACCACTGAATCTGATTCCACTCATACAAATGAAGACAACATTAACACAACGAAcactaaatagatttttttaaaatgtccttttgtTTTGGACAGTGACAGGAGAAGAGATCAAACCTCCCAAAAGAGATACTGTTATATATGATTCCACATTGcacaaaattttcatttgttttggcaTGTGCTTAATACTTAAATCTGTTTGGAATACATGAGACAGGCAAAACGTTAGATTttcaaacacaaattaattttagcAGCACTTCAGATactagttatatatatatagatatatat

Function

symbol description
popdc2 Predicted to enable cAMP binding activity. Acts upstream of or within cardiac conduction; heart looping; and striated muscle cell differentiation. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in sarcolemma. Is expressed in heart rudiment; musculature system; pectoral fin bud; pericardial region; and somite. Orthologous to human POPDC2 (popeye domain containing 2).

NR:

description
popeye domain-containing 2-like isoform X2

GO:

id name namespace
GO:0051146 striated muscle cell differentiation biological_process
GO:0061337 cardiac conduction biological_process
GO:0001947 heart looping biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249035.1 True 2871 mRNA 0.42 4 14590473 14595370
XM_043249038.1 False 2728 mRNA 0.42 4 14590475 14595370

Neighbor

gene id symbol gene type direction distance location
sap18 sap18,LOC107597378,LOC107668906,LOC107569214 coding upstream 15959 14573116 ~ 14574514 (+)
il17d LOC107724475,LOC107658252,LOC107712276,LOC107597382 coding upstream 71750 14517379 ~ 14518723 (+)
ift88 ift88,LOC107712272,LOC107658253 coding upstream 73282 14506969 ~ 14517191 (+)
zmym2 zmym2,LOC107597385,LOC107569087 coding upstream 111909 14461924 ~ 14478564 (+)
mphosph8 mphosph8,LOC107658258,LOC107668876 coding upstream 130048 14449476 ~ 14460425 (+)
wars2 wars2,LOC107668852,LOC107724450,LOC107658241,LOC107712263 coding downstream 46825 14642195 ~ 14657243 (+)
tbx15 tbx15,LOC107724509,LOC107712261 coding downstream 62893 14658263 ~ 14678569 (+)
gdap2 gdap2,LOC107668848,LOC107658195,LOC107724478,LOC107569935 coding downstream 163236 14758606 ~ 14778118 (+)
commd6 commd6,LOC107668853,LOC107724493,LOC107720112 coding downstream 299220 14894590 ~ 14896618 (+)
tbc1d4 LOC107600383,LOC107655530,LOC107741985,LOC107668890,LOC107720111 coding downstream 303414 14898784 ~ 14925069 (+)
G70185 NA non-coding upstream 5447 14584591 ~ 14585026 (+)
G70184 NA non-coding upstream 5985 14584231 ~ 14584488 (+)
G70181 NA non-coding upstream 10005 14579270 ~ 14580468 (+)
G70069 LOC107555327,LOC107723673,LOC107658285,LOC107673585,LOC107729410 non-coding upstream 118656 13948753 ~ 14471817 (+)
G70125 NA non-coding upstream 254722 14332300 ~ 14335751 (+)
G70198 NA non-coding downstream 18779 14614149 ~ 14615034 (+)
G70199 hao2,LOC107724497,LOC107569314,LOC107668850 non-coding downstream 20226 14615596 ~ 14617544 (+)
G70200 NA non-coding downstream 22900 14618270 ~ 14619038 (+)
G70205 NA non-coding downstream 116189 14711559 ~ 14795937 (+)
G70215 NA non-coding downstream 180245 14775615 ~ 14785182 (+)
LOC122351767 NA other upstream 1034 14587082 ~ 14589439 (+)
ccnt2a ccnt2a,LOC107658298,LOC107725237,LOC107723659,LOC107684218,LOC107555058,LOC107555362 other upstream 905638 13676163 ~ 13684835 (+)
G69834 col6a3,LOC107685998,LOC107567775,LOC107670696 other upstream 1285882 13289693 ~ 13304591 (+)
G69755 NA other upstream 1604495 12984868 ~ 12985978 (+)
LOC122351618 clasp1a,clasp2,LOC107741904,LOC107714287,LOC107673735,LOC107596084,LOC107706129,LOC107696541,LOC107669402 other upstream 1787065 12732298 ~ 12803408 (+)
si:ch211-168k14.2 si:ch211-168k14.2,LOC107681321,LOC107748618,LOC108441415,LOC105905900,LOC108266656,LOC107600399 other downstream 805757 15401127 ~ 15425361 (+)
LOC122351678 hspe1,mob4,LOC107690609,LOC107595852,LOC107569672,LOC107731766,LOC106586370,LOC105016277,LOC100701317,LOC103156730,LOC101472107,LOC102310674,LOC102783361,LOC108238849,LOC107690608,LOC106582314,LOC105899369 other downstream 1112831 15708201 ~ 15715901 (+)
plcl1 LOC107569711,LOC107731752,LOC107690606,LOC107719808,LOC107659890,LOC107595846 other downstream 1139200 15734570 ~ 15789702 (+)
rabl3 rabl3,LOC107569739,LOC107690631,LOC107659889,LOC107595844,LOC107736356 other downstream 1304057 15899427 ~ 15901720 (+)
G70814 NA other downstream 2133137 16728507 ~ 16731361 (+)

Expression


Co-expression Network