hsd3b1 (hsd3b1,LOC107569293,LOC107658243,LOC107712267)


Basic Information

Item Value
gene id hsd3b1
gene name hsd3b1,LOC107569293,LOC107658243,LOC107712267
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14604819 ~ 14607004 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249048.1
ATGACTCTATCAGGAGATGTATGCGTTATTGCGGGAGCCTGTGGGTTTTTGGGAGAAAAGCTGGTCAGGCTGTTGCTGGAAGAGGAGAAGCTTGCTGAGATTAGATTGCTGGATAAAAACATCCAGTCTGAGCTAATACAGTCTCTTGATGGTTGCAAGGGAGAGACTAAAGTGAGTGTTTTTGAGGGAGATATCAGGGACCGTGAACTACTGAGAAGAGCCTGTAAAGGAGCAGCACTTGTTTTCCACACAGCATCTCTCATCGATGTCATTGGATTAATTGAATACAGTGAATTATATGGAGTTAATGTTAAAGGAACACAGCTGCTGCTCGAGACCTGCATCCAAGAAAACGTGTCCTCCTTCATTTACACTAGCAGCATTGAAGTGGCTGGTCCCAATCCCCGTGGTGATCCAGTCATTAACGGCAATGAGGACACTCCTTACTCCTCCTGTCTTAAGTTTAGCTACAGCAAAACCAAGCATGAGGCTGAGCAGATTTGCCTTCAGGCCAATGGAGAGCTGCTCTGTAATGGAGGTCAGCTGGCAACCTGTGCACTGAGGCCCATGTACATCTATGGACCAGGCTGTCGATTTACTTTAGGCCACATGCGGGATGGAATCCGCAATGGAAATGTGCTGGTGAGAACATCACGCCGTGAGGCCAAAGTGAATCCTGTATATGTGGGAAACGTAGCACTGGCACACATACAAGCAGGTCGAGCTCTCAAAGATTCTCAGAAAAGGGCTGTGATGGGTGGAAACTTCTATTATATCTCAGACGACACACCGCCTGTTAGCTACTCAGACTTTAATTATGCTATTCTTTCACCATTAGGCTTTAGGATACAAGAGAGGCCCATTCTGCCCTTCCCACTTCTATATCTACTGTCGTTCCTCATGGAATTACTGCACATTGTGCTCCGACCTATCCTGAGGTTCACCCCTCCCCTAAACAGACAGCTACTGACCATGCTAAACACATCCTTTAGTTTCTCATACCAAAAGGCACACAGGGATTTTGGATATAGCCCTCGCTATGACTGGGAAGAGGCACGTAGGTGCACTAGCGACTGGTTAGCATCTGTCTTACCCACAGAGAGGCAGCGGATtaacttgaaataaattaacagtatgtttaataatattgtgCTACCTGTATTTGTAAGCAGTCATGTTCTGTTTGATGTTTTATAGTCAAGTTAAACATAAACTTAGTAATTAGATCCATGGTAGTGGAAAACAATGGCTAATGTCCAATGTTTAGTGAATAATGCTtgttttatggtaaaaaaaaaaaaaattgctgaataTTGTTTATGCATATCACAAATAGAAATGACTATCCATAAAAGGAAGCAGTAATAAGTCATAATActtaatttcaattaaacaaTATGTTGTGGTAATTCAAAAGCCTACTTGTCTGTATTTTACTCGACTTGTCTGTTGTCATttagttatcttttttttactttttattcatttactgacAACAAGTCATTTTGAGGAAATGTGTAAGGTTTCATGAATATTTGATAAATGCTGTGAAAAGtttcaataaatgttattgtaacTTTATTTGtgatatccaaaataaaattgacAACAGATT

Function

symbol description
hsd3b1 Enables 3-beta-hydroxy-delta5-steroid dehydrogenase activity. Acts upstream of or within pigmentation. Is expressed in brain and endocrine system. Human ortholog(s) of this gene implicated in hypertension and hypospadias. Orthologous to several human genes including HSD3B1 (hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1).

NR:

description
3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase

GO:

id name namespace
GO:0006694 steroid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity molecular_function

KEGG:

id description
K00070 HSD3B; 3beta-hydroxy-Delta5-steroid dehydrogenase / steroid Delta-isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249048.1 True 1615 mRNA 0.41 3 14604819 14607004

Neighbor

gene id symbol gene type direction distance location
pla1a LOC107724500,LOC107668900,LOC107569279,LOC107712265,LOC107597373 coding downstream 2022 14595394 ~ 14602797 (-)
hcn5 si:rp71-68n21.12,LOC107724451,LOC107712254,LOC107658208,LOC107668864,LOC107569239,LOC108270784 coding downstream 18986 14579283 ~ 14585833 (-)
ska3 LOC107724453,LOC107668865,LOC107569224,LOC107597424,LOC107577924 coding downstream 26547 14574795 ~ 14578272 (-)
LOC122351989 LOC107668905,LOC107569207,LOC107724507,LOC101884374 coding downstream 31760 14569810 ~ 14573059 (-)
lats2 lats2,LOC107724484,LOC107569193,LOC107712271,LOC107658249,LOC107668891,LOC107597418 coding downstream 35685 14552182 ~ 14569134 (-)
si:rp71-68n21.9 LOC107724495,LOC107569301,LOC107668845,LOC107597372,LOC107658242,LOC107712264 coding upstream 1079 14608083 ~ 14613939 (-)
hao2 hao2,LOC107724497,LOC107597376,LOC107658196,LOC107712250,LOC107569314,LOC107668850 coding upstream 7722 14614726 ~ 14620909 (-)
wdr3 wdr3,LOC107569352,LOC107712260,LOC107724477,LOC107658238,LOC107668854 coding upstream 142254 14749258 ~ 14758586 (-)
tent5c fam46c,LOC107724489,LOC107668849,LOC107658236,LOC107569365,LOC107597368 coding upstream 176453 14783457 ~ 14789290 (-)
man1a2 man1a2,LOC107668846,LOC107724469,LOC107658234 coding upstream 188427 14795431 ~ 14862092 (-)
G70396 NA non-coding downstream 9477 14594263 ~ 14595342 (-)
G70393 NA non-coding downstream 14544 14589858 ~ 14590275 (-)
G70382 NA non-coding downstream 41827 14477332 ~ 14562992 (-)
G70332 LOC107724468 non-coding downstream 357491 14244287 ~ 14247328 (-)
LOC122352120 NA non-coding downstream 415818 14173817 ~ 14189001 (-)
G70438 LOC107600383,LOC107655530,LOC107720111 non-coding upstream 309796 14916800 ~ 14918840 (-)
LOC122352110 NA non-coding upstream 330120 14937124 ~ 14942863 (-)
G70494 LOC107740907,LOC107668887,LOC107600382,LOC107720110 non-coding upstream 368408 14975412 ~ 14981853 (-)
G70503 zic2a,LOC107600377,LOC107694587,LOC107569553,LOC107681317 non-coding upstream 406353 15013357 ~ 15275841 (-)
LOC122351681 dach1,LOC107668899 non-coding upstream 427815 15034819 ~ 15041730 (-)
LOC122351495 NA other downstream 232145 14359646 ~ 14372674 (-)
G70317 NA other downstream 351043 14196479 ~ 14253776 (-)
G70294 NA other downstream 664951 13938259 ~ 13939868 (-)
rif1 LOC107658288,LOC107555351,LOC107658286,LOC107725242,LOC107680950 other downstream 691876 13879570 ~ 13912943 (-)
G70261 LOC107682829,LOC107723691,LOC107555352,LOC107658202,LOC107555050 other downstream 791492 13807822 ~ 13813327 (-)
G70549 NA other upstream 696099 15303103 ~ 15305975 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other upstream 782214 15389218 ~ 15399437 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other upstream 1164417 15771421 ~ 15771864 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other upstream 2113800 16720804 ~ 16746222 (-)
G70986 pou2f1b,LOC107748141 other upstream 2210136 16817140 ~ 16823775 (-)

Expression


Co-expression Network