desma (desma,LOC107688742,LOC107602901,LOC107716787,LOC107721591,LOC107668394)


Basic Information

Item Value
gene id desma
gene name desma,LOC107688742,LOC107602901,LOC107716787,LOC107721591,LOC107668394
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7295578 ~ 7301529 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249053.1
TTTGCTGCTTGACCCTCATTCTACCACACTGCCTTCAGCGAAGCGGCATTAGCACACCATACAACCCTTAGAGGCCCAGTCATGAGCAAGTCATATTCAGCTTCAGCCGAGACGGCTTCCTCTTACCGCCGCACCTTCGGCTCCGGCCTTGGCTCCTCCGTTTTCTCTGGCCGCGCAGGTTCCTCTGGATCCTCTCGTGTGTCCTCCAGAGTTTATGAAGTCACCAAGTCCTCCTCTTCTCCCATGTATTCCAGCCAGCGCGCATCCAGCGCTTCATTCGGTGGTGGATCAATGGTCCGTTCCTATGCAGGCCTCGGTGAGAAGCTGGACTTCAATCTGGCCGACGCCATGAACCAGGACTTCCTCAATACACGCACCAACGAGAAGGCAGAGCTGCAACATCTCAACGACCGCTTCGCCAGCTACATCGAGAAGGTGCGCTTCCTCGAGCAGCAGAACCAGGCCTTGTCTGTGGAGATCGAACGTCTGCGGGGCCGCGAGCCCACGCGCATCGCAGAGATGTACGAGGAGGAGATGAGAGAGCTGCGCAGACAGGTGGATgcactgaccaatcagaggtCCCGCATTGAGATAGAGAGGGACAACCTGGCCGATGACCTGCAGAAACTAAAACAGAGAGTTCAAGAGGAGATCCACCAAAAAGAGGAAGCTGAGAATAACCTCTCTGCTTTTAGAGCTGATGTAGATGCTGCCACTCTGGCCAGGCTGGACCTGGAAAGACGTATCGAGGGCCTTCATGAAGAGATTGCATTCCTCAAGAAGATCCACGAGGAGGAGATCCGTGAGCTGCAAAACCAGATGCAGGAGAGTCAGGTGCAGGTCCAAATGGACATGTCCAAACCAGACCTGACTGCCGCCCTCAGGGACATCCGCATGCAGTACGAGGCTATCGCTGCCAAGAATATCGCCGAGGCTGAGGAATGGTACAAGTCTAAGGTGTCAGATCTGAACCAGGCGGTAAACAAGAATAATGATGCTCTCAGACAAGCCAAGATGGAGACCATGGAGTTCCGTCACCAGATCCAGTCCTACACTTGCGAGATCGACTCTCTCAAGGGAACCAATGAGTCTTTGATGAGGCAAATGAGGGAGATGGAGGAGAGGATGGGTCGTGAGGCCGGCGGTTTTCAGGACACCATTGCCCGTCTTGAGGCTGAAATCGCAAAAATGAAGGACGAGATGGCTCGCCATCTCCGCGAGTACCAGGATCTGCTGAATGTTAAGATGGCACTCGATGTGGAGATCGCAACCTACAGGAAGCTTCTGGAAGGAGAGGAGAGCAGgATCTCCTTGCCTGTGCAGTCCTTCTCTACCTTGAGTTTCAGAGAGACAAGCCCAGAGCAGCACCACCAGCaccagcaacaacaacaacaacagcgtTCATCTGAAGTCCACTCTAAGAAAACAGTTCTGATCAAAACTATTGAGACCCGGGATGGCGAGACTAGGACAAGTGAGGGCATGAGTGCCCTCAGTGCTCAGTGTgtCGTCAGTGAGTccacacagcaccagcaggaCATCATGTAAAGCCTATGAAACAGATTGAGTTTCATAGAATCCCTTTCCCTAACTTACATTTTCACTGATGGCCGCAGGCTTTTCATGCACACGCCCAGTATTGTCACGACCCATTACTGCATATGTGGATGATGcaggcaaaaaaagaaaagtgagcTGAAGAACAAGAGGGAGAACGAGCAAAACGGCATAATATGCATATTGTACGGCGAGTCCTGAATGTGGCCAGATGATCTCAGAGGTTTTTGTtgatatgaatgtatgtgtggtAGGGTCATATCTGAAAAGCTGTTCCACTGCTACAAAAAGacaataaactgtattttcttcCTATAAAA
>XM_043249054.1
TTGCTGCTTGACCCTCATTCTACCACACTGCCTTCAGCGAAGCGGCATTAGCACACCATACAACCCTTAGAGGCCCAGTCATGAGCAAGTCATATTCAGCTTCAGCCGAGACGGCTTCCTCTTACCGCCGCACCTTCGGCTCCGGCCTTGGCTCCTCCGTTTTCTCTGGCCGCGCAGGTTCCTCTGGATCCTCTCGTGTGTCCTCCAGAGTTTATGAAGTCACCAAGTCCTCCTCTTCTCCCATGTATTCCAGCCAGCGCGCATCCAGCGCTTCATTCGGTGGTGGATCAATGGTCCGTTCCTATGCAGGCCTCGGTGAGAAGCTGGACTTCAATCTGGCCGACGCCATGAACCAGGACTTCCTCAATACACGCACCAACGAGAAGGCAGAGCTGCAACATCTCAACGACCGCTTCGCCAGCTACATCGAGAAGGTGCGCTTCCTCGAGCAGCAGAACCAGGCCTTGTCTGTGGAGATCGAACGTCTGCGGGGCCGCGAGCCCACGCGCATCGCAGAGATGTACGAGGAGGAGATGAGAGAGCTGCGCAGACAGGTGGATgcactgaccaatcagaggtCCCGCATTGAGATAGAGAGGGACAACCTGGCCGATGACCTGCAGAAACTAAAACAGAGAGTTCAAGAGGAGATCCACCAAAAAGAGGAAGCTGAGAATAACCTCTCTGCTTTTAGAGCTGATGTAGATGCTGCCACTCTGGCCAGGCTGGACCTGGAAAGACGTATCGAGGGCCTTCATGAAGAGATTGCATTCCTCAAGAAGATCCACGAGGAGGAGATCCGTGAGCTGCAAAACCAGATGCAGGAGAGTCAGGTGCAGGTCCAAATGGACATGTCCAAACCAGACCTGACTGCCGCCCTCAGGGACATCCGCATGCAGTACGAGGCTATCGCTGCCAAGAATATCGCCGAGGCTGAGGAATGGTACAAGTCTAAGGTGTCAGATCTGAACCAGGCGGTAAACAAGAATAATGATGCTCTCAGACAAGCCAAGATGGAGACCATGGAGTTCCGTCACCAGATCCAGTCCTACACTTGCGAGATCGACTCTCTCAAGGGAACCAATGAGTCTTTGATGAGGCAAATGAGGGAGATGGAGGAGAGGATGGGTCGTGAGGCCGGCGGTTTTCAGGACACCATTGCCCGTCTTGAGGCTGAAATCGCAAAAATGAAGGACGAGATGGCTCGCCATCTCCGCGAGTACCAGGATCTGCTGAATGTTAAGATGGCACTCGATGTGGAGATCGCAACCTACAGGAAGCTTCTGGAAGGAGAGGAGAGCAGgATCTCCTTGCCTGTGCAGTCCTTCTCTACCTTGAGTTTCAGAGAGACAAGCCCAGAGCAGCACCACCAGCaccagcaacaacaacaacaacagcgtTCATCTGAAGTCCACTCTAAGAAAACAGTTCTGATCAAAACTATTGAGACCCGGGATGGCGAGgtCGTCAGTGAGTccacacagcaccagcaggaCATCATGTAAAGCCTATGAAACAGATTGAGTTTCATAGAATCCCTTTCCCTAACTTACATTTTCACTGATGGCCGCAGGCTTTTCATGCACACGCCCAGTATTGTCACGACCCATTACTGCATATGTGGATGATGcaggcaaaaaaagaaaagtgagcTGAAGAACAAGAGGGAGAACGAGCAAAACGGCATAATATGCATATTGTACGGCGAGTCCTGAATGTGGCCAGATGATCTCAGAGGTTTTTGTtgatatgaatgtatgtgtggtAGGGTCATATCTGAAAAGCTGTTCCACTGCTACAAAAAGacaataaactgtattttcttcCTATAAAA

Function

symbol description
desma Acts upstream of or within several processes, including heart contraction; regulation of cardiac muscle contraction by calcium ion signaling; and sarcomere organization. Located in Z disc. Is expressed in several structures, including cardiovascular system; hindbrain neural plate; mesoderm; musculature system; and pectoral fin. Used to study myofibrillar myopathy 1. Human ortholog(s) of this gene implicated in intrinsic cardiomyopathy (multiple) and myopathy (multiple). Orthologous to human DES (desmin).

NR:

description
desmin isoform X1

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0045214 sarcomere organization biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0060047 heart contraction biological_process
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07610 DES; desmin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249053.1 True 1877 mRNA 0.51 10 7295578 7301529
XM_043249054.1 False 1834 mRNA 0.51 9 7295578 7301528

Neighbor

gene id symbol gene type direction distance location
LOC122352006 bin1,LOC107688739,LOC107716789,LOC107721593,LOC107668401,LOC563561 coding downstream 27278 7259194 ~ 7268300 (-)
slc23a3 LOC107688765,LOC107716759,LOC107602874,LOC107721561 coding downstream 38965 7248019 ~ 7256613 (-)
mitd1 mitd1,LOC107688779,LOC107668392,LOC107721562,LOC107721614 coding downstream 77570 7215013 ~ 7218008 (-)
cracdla kiaa1211l,LOC107602905,LOC107688737,LOC107602875 coding downstream 80622 7200270 ~ 7214956 (-)
creg2 creg2,LOC107716793,LOC107721575,LOC107602906 coding downstream 95557 7196115 ~ 7200021 (-)
dnajb2 dnajb2,LOC107602899,LOC107668399,LOC107688744,LOC107716785,LOC107721618 coding upstream 27553 7329082 ~ 7336386 (-)
tuba8l3 tuba8l3,LOC107387629,LOC102223550,LOC108423972,LOC107716784 coding upstream 41578 7343107 ~ 7346286 (-)
LOC122352131 si:ch73-199e17.1,LOC107668388,LOC107716782,LOC107716784,LOC102213860,LOC101168255,LOC102793273 coding upstream 45581 7347110 ~ 7349416 (-)
si:ch211-67e16.11 si:ch211-67e16.11,LOC107596562,LOC105899123 coding upstream 579649 7881178 ~ 7892408 (-)
si:ch211-67e16.4 LOC107596547,LOC107738112,LOC107668355,LOC107688758,LOC107752914,LOC107592999 coding upstream 636523 7938052 ~ 7947805 (-)
LOC122352164 NA non-coding downstream 260217 6982678 ~ 7035361 (-)
LOC122351994 NA non-coding downstream 400181 6892652 ~ 6895397 (-)
G68357 NA non-coding downstream 412602 6882585 ~ 6882976 (-)
G68328 st6gal2a,LOC107676409,LOC107721598,LOC107688722,LOC107551073,LOC107602911,LOC107716800 non-coding downstream 482563 6809848 ~ 6813015 (-)
G68333 LOC107721598,LOC107716800,LOC107688722,LOC107579700 non-coding downstream 501203 6793402 ~ 6794375 (-)
G68473 NA non-coding upstream 26300 7327829 ~ 7341494 (-)
G68489 NA non-coding upstream 79761 7381290 ~ 7381508 (-)
G68555 nrp2b,LOC107688766,LOC107688751,LOC107752901 non-coding upstream 513720 7815249 ~ 7818832 (-)
G68554 nrp2b,LOC107596550,LOC107716756,LOC107688751,LOC107593002,LOC107752901 non-coding upstream 518479 7820008 ~ 7821889 (-)
LOC122352023 NA non-coding upstream 1169334 8470863 ~ 8474578 (-)
LOC122351350 cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538 other downstream 141624 7070985 ~ 7153954 (-)
G68188 irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 other downstream 1034509 6246900 ~ 6261069 (-)
LOC122351979 NA other downstream 1195666 6099071 ~ 6099912 (-)
G68124 dip2a,LOC107549743,LOC107752588,LOC107720936 other downstream 1251653 6043275 ~ 6043925 (-)
LOC122351463 LOC107689507,LOC107549921,LOC107670332,LOC107752589,LOC107549740 other downstream 1364442 5912855 ~ 5931136 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other upstream 712920 8014449 ~ 8024672 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other upstream 774939 8076468 ~ 8094847 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other upstream 2606659 9908188 ~ 9910178 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other upstream 3131978 10433507 ~ 10443619 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other upstream 3213743 10515272 ~ 10519457 (-)

Expression


Co-expression Network