rpgra (LOC107555232,LOC107663889)


Basic Information

Item Value
gene id rpgra
gene name LOC107555232,LOC107663889
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10149875 ~ 10160006 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249095.1
tctttttttctgttgccaGGGCAACGTTTACTTCCGGTAACTCTTCAACAGGGAACAGTTGACAGTTCAGGAATGTCATCTGCAGAACAAAGGTGTAGGAGGTGATGACAGGAGAAACAGACACAGAAATACCAGAAACAGGTGCTGTATTCACCTTTGGAAAGAGTAAAATAGCAAACAATGTACCCAGCAGATTATGGCTAAAGAATGATATACCTGTGCAAATCTCATGTGGACAGTCACACTCTGCCTTTGTAACAGAGCAGGGCcgtttgtttgtgtttggaaATAATAACAGAGGTCAGCTCGGTCTTCAAACCAAAGGACCGGTGAATAAACCGACCTGTGTTAAAGTTCTTAAAGGGGAAAGAGCTCAGTTTGTTGCCTGTGGGACTGTTCACACACTCGTAAGCACCTCACAAGGGGAAATTTTTGCAGCTGGAGGAAACAGTGATGGACAGCTCGGACTGGGCCACTGTAACGACAGCGTTTCTTTCCAGCGGCTCCACCCCTTTTGTGACAATGCTCCAATCAAATTGCTCTCTGCAGGCGGCCACACCTCTGCTGCACTTACAGAGGATGGCAGGCTTTTTCTGTGGGGTGATAACTCTGTTGGTCAGCTTGGTTTGGGGAATGACAGCCATGCCTTATTGCCTAAAGAGCTGAAACTAAAACAGTCAATTCAGTGGGTCTCGTGTGGATATAGACACTCAGCTCTGGTCACAGATAACGGTGATGTTTTCACTTTCGGGGAGAGTGCAGATGGACGACTGGGTCTTTCTGCTCATCAGCTGGCCAACCACAGTCATCCTCAGCGGGTTGAATCTCTGCACGGAGTGCTGCAGGTGGCATGTGGAGACAAGCACACACTAGCTCTTACAGAGAATGAGTTGTATTCTTTTGGCCGTGGGGAGTTTGGGCAGCTGGGCTTGGGGACACTTATGTTTTTAGCAGACACACCTGTTGCTGTCGGCCACTTCAGGAAAGGCAGGGTCAGTCATGTCACATGTGGTGAAAACCACAGTGCATTAATAACAGACAGTGGTCTTCTATATACATTTGGAGATGGCCGTTATGGGAAGTTGGGCCTTGGAGATGAGAATTTCACCAATCAGTTCAGTCCAACTGTATGCCAGAGGTTCTTTGATTACTCAGTCATGTCTGTGGCCTGTGGTTTCAGTCACATGCTGGTTTTCGCACGGCCACGGCAACAGGAAAGTGAAGAAGTTTGTTTAGAAGATGAAGATGTTACCTACTCTTACCTGGACAGGTGTTACACCTCAATGTTACAGGGGCAACCTTTAGAGCATATTCCAGACCCAGCACCTGCTCTAGTCTCACAACCCACCTTTCTCCCCTCATCTCTTCCAACTTCTCACCGCTGGAGCCTATCAACACGTGCCAGACGAAGACAGAGGgagagCTCACCTGCACAGTTTGGCCCAGAATTTTGCAGTCTCCCTCCTCCTACAACTGGCTTTACTGCACTAGCCCTGACAGGCAACATCATACAACCCAGATCTCCCAGAGACACTCCTAAACGCTTCAAAACTGAATCTGATTCTTCCTCAATCACACTGCCTGTCATGACAACACCAcTCACACAAATCACAAAGAAGAATGATGACTGCCATAGTGTTGGAAGATCTGAAAACAGCATATCAGACAATCATTCTGGCATGGTAGAGAATATCCCTCAACATGCTCCCCCCACCGAAGTACATGGTGCTTATGTTTCTCCACCATCAAGCAATCTAAAAAGCAAGAAGGCCAAGTCTGGAGATTTAAAGAACCCTGCCATGGCGGAAGAACATTCTTCTCTTACAGCATCACAAAGCAAaatacaaaccaaaacaaacaaaaaaaccatccagagtacaaataataaatctaaaagtcAAGCAGTAGACATCAGATTATCTTCAGATAGAATATCAGCTAAGGAAAATGAGGGAAGCAGTGAAACATGCAGTACTAATACTGATCCAAGGGACAACATTTCAGAAACAGACAAATATAGTACGGTTCAACACGCAGAGTCCAGAAGTCAAGAGGTCTCTGCTCTTTCTGAGATTGAGAAGAAGACCAAAACAAGCTCAATTAAAAGTCAAAAGACTTTCTCCAGAAGTTCTCCATTTCAGGAAGTTGGACAAGTTAGAACAACGTCCACAAAAGAGGTGAAAACTCCCAAAATAAAAGAGATGGGTATTCCAGTAAGAGCTACAAAAAGGGTCAAGTCACCAGTCAAGGTTCAAAATGTGTCCTCCGGCGCTAGAGAGGTTAACAAAGTTGAATCAGTGCCTCAGGCAGATGCTCAAAGAGACATCAAGCCATCCCCTGGAAATGCTCAAGAGGTCAGAACAAAACcgataaacaaacaagaaaagagAGTCTCAACACCAGTCAAGATTCCAGCTAAAATACAAAGCAccccaaaaaaaggaaaagaaaaaatttatGTTGACACAGAAGAAAGACTAAGTGAACTTGCaccaaagaaagcaaaaaagaagAGATCAGATGTAGAAAGAGCCCCAAAATCAGAAACAGCTTCCAAAACATCCAGCCCTCAATCAGTTTCTATCCCCACACAAACATCTAAAGCTGAAAAGCAAAAACCTGTGGAGTCTAAGAACTCAGAATTTGAGCTTAAACATGCAATTCCAGCAAATGAGAAAACTGAACTCAAAAAGGGAAATGATAGTAAAATACCTCAGAACTCTGATATATCATTTCCCCCAATTAAGAACCAAAAATCAGGaagaactgcaaaaaaaagacaatcagCTTCTAACTTGCATTAAGCAAAAAATAGTCAGTCGCCCACTGATAAAGTGCTTACTGAACAGAAACATGAATTTCCATCTATTAAAAGCTTAGCTCCAGAAAGAGGCCACTCATTTTCCAGTTTATGGTCCAATAACCAATCGGCAACCAATAAATCTGCCACCAAAGAAACCGAATCATCATCTGGTAAGTTATTGAGTCCATCAAGTTCATCACACCACAAGCAgtcacaacaaaaaataaataaattatccaAAAAAACAGCTGAACCTAAAGAGCCAGACAGGAAGCCACATGCAGAGCAGAGCATTATGGGTAGTGTAGTTTCCTCACTACCAGCCATGGCTATGGCAAGTGCTGCACCACTTCTGATAAAAGCAGCTGAAGTTCTTTCTGAACCCCAACCAGAACCAAGTATTCAAATGTCCTCACATGCATTAGTGTCCAAGGAAACACCAGGAAGCAATATCTTGCAAGAACAAGAAGTGGAACAGGAAAGCACCGTTCAGGATGTATCAGCAATCGAGGAAGTTGATGACAGCATAATTGAACAGCAGATTACACAAGATGAACAAAATGAGCTAGTTTCAAAAGAAACCGAAATGTGGGTGAGTGATGATGAAAAAATACAGGAAGAAGAACATGTCAAGGATAGtaagacagagagaaaggaagagggAGGTGAAGAAGAGAGTCTCGCTGAGGAAGAAGATGAACTTGAGGGGGTTGGGCAGGGAGAGGAGAGTAGTGCTgttgaagaggaagaagaaagagagagtgataATTATGAAGATAAAGGAGAGAATACTCAACAGGGAGAGGAGGAaaatgaagaagaggaggaggaagaagaaggtGAGGCAgcaggagaggaagaggatgacAGCAAAAGCAGACAGAGCAGCAGAAGTGAGGGAGGGATGAGTAAAGGTGAAGAAAGTGGAGATGAGACTGAAAGAGAAGAAGGAGAGCAGAGTGAGGAACAAGAGAAAGAGGAGATTGAGGACAAAGAAACTGATGAAaaggaggaagatgaagagagTGGTAATGAAGACAAGGAAGAGGAGAGGGAGAGTGAGGTGGAAGACGAGGAGAAAACAGATGCAGAGGAGGAGCAGGAAGGAGAGAGCAGTGATGAAGAGAAAACTGATGAACAATATGAAAGTGAGAGATCAGATGAAGAGGAAGGAGACAGTGAAGAAAAGGATGAGATtgaggaagaggatgaagagaATGAGACAGTGGGAGGAGAGGGAGAACAGGAAGAAAAGGAGGAAGAAGAAagtgaggaagaggatgagACAGTGGAAGGAGAGGAAGAACAGGAAGAGAAGGAGGAAGAAGATGaggaaaataatgaaaaattgaaAGACAAGAAAGATGGGGTCACAAACAAGAGTGAagaggagagagtgagagaagaagaagaagagaaacagAATGAGGTGGAAGCTGAAGATGAGGACAAAATGTCagagacagatggagaaaaaCAAGAAGGGAAAGAACAGattgaggaagaggaagaaattGATACAGGTGAAGAAAAGTTTGGAGAAAAAGAGAATCTTGACGTTTTAGAGACACAGGAAACAGAGAGAggagatgaagatgatgaaatgGAGGAAGAAAATAATGCAGAAGAAAGTGGAGATGAGGAAGAAGCAGAAGAGGACGAAATAGACAAGGGGGacgaaaataaaacaacagagagAAGACAGAGGGAACAGAGAGAAACTAATGAGGAAGAAGGGGAGGGAGGTGAAGAagtagaagaagaagaggaggaggaggaggaggagaaagaaattaGTGAGGAAGAAGAACAGGCAGAAGagagtgaggaagaggaggaagaatcTGACCAGGaagaaaagaatataaaaacagagacaaacaggAGGAAACAGAGAGAATCtagtgaagaagaagaagaggaagaagagagtgaggaagaggaggaagaaaccaaacaggaaaaaaagaatataaaaacagagacaaacagaaGGAAACAGAGAGAATCTagtgaagaggaagaggaacaggaagaagagagtgaggaagaggaggaggaagaaatagagcagaaagaaaagaatataaaaatagaagctagtgaagaggaagaagaagaacagagtgaaggtgatgaagatgaggaggaggaggaagaaacagagcatgaaaaaaagaatattagaGAAGAGAAACATGGAAGCAATGAGGAAGAAGAACAGGAGGAAGAGggtgaggaagaagaggaagaggaagaagctGAGCTGAAAAAAGAGAACATAAGCAAGACAAATGAGAGGAAACAGAGAGAAACCagtgaagaggaagaagaagaggatgaagaggatactgaggaagaggaggaggaaggggaAGAACAAGAAagtgaggaggaagaagaaggcgaggaagaggaggaggaagaagaaaagaCCAAAAAAGTACCAAAGCAGAGAGCCAAACCAGAAGTGTTACCTCCACGAAGACAGACGAGttcacagagagacagacagaagagcAGACAAAGACATCAACAGAATGTCAAAGAGAAGAGACAAACAGATAGTGGTGCTCAGGACCCTCAGTTCTGGAACAATGTCCTGCCACAGTATCTAAACCttaaataatacacaaacacagagaatGTGCTCGATGGATGTTGGAGAGGTTAACACATTTTGGT

Function

NR:

description
PREDICTED: trichohyalin-like

GO:

id name namespace
GO:0072001 renal system development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249095.1 True 5488 mRNA 0.43 16 10149875 10160006

Neighbor

gene id symbol gene type direction distance location
srpx srpx,LOC107748210,LOC107663918,LOC107555235 coding downstream 634 10140293 ~ 10149241 (-)
LOC122351802 NA coding downstream 48147 10098080 ~ 10101728 (-)
LOC122351801 NA coding downstream 53631 10092350 ~ 10096244 (-)
gja5a cx45.6,LOC107663873,LOC107748213,LOC107572527,LOC107720145,LOC107655501,LOC107600426 coding downstream 78990 10060318 ~ 10070885 (-)
acp6 acp6,LOC107748216,LOC107572529,LOC107663850,LOC107720144,LOC107600425,LOC107655526 coding downstream 92115 10051625 ~ 10057760 (-)
tfg tfg,LOC107655517,LOC107720125,LOC107748203 coding upstream 66381 10226387 ~ 10235671 (-)
jagn1a jagn1a,LOC107555208,LOC107748222,LOC107720154,LOC107655493,LOC107600432,LOC107663862,LOC108432576 coding upstream 76292 10236298 ~ 10237964 (-)
col8a1a col8a1a,col8a1,LOC107720134,LOC108432575,LOC107748221 coding upstream 79291 10239297 ~ 10247492 (-)
tmem30c tmem30c,LOC107655489,LOC107706099,LOC107720155,LOC107555223,LOC107600433,LOC107663858 coding upstream 118852 10278858 ~ 10284622 (-)
cmss1 cmss1 coding upstream 125020 10285026 ~ 10289515 (-)
G69168 NA non-coding downstream 11116 10136649 ~ 10138759 (-)
G69136 LOC107555234,LOC107655498,LOC107748211,LOC107663925,LOC107720146,LOC107600385 non-coding downstream 39632 10108975 ~ 10110243 (-)
G69147 NA non-coding downstream 62853 10085433 ~ 10087022 (-)
G69018 NA non-coding downstream 204073 9913086 ~ 9945802 (-)
G69004 NA non-coding downstream 258279 9890651 ~ 9891596 (-)
LOC122351639 NA non-coding upstream 93927 10253933 ~ 10263447 (-)
G69223 NA non-coding upstream 266221 10426227 ~ 10426465 (-)
G69228 NA non-coding upstream 284287 10444293 ~ 10444641 (-)
G69231 NA non-coding upstream 285271 10445277 ~ 10446767 (-)
G69346 NA non-coding upstream 677506 10837512 ~ 10844040 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other downstream 239697 9908188 ~ 9910178 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other downstream 2055028 8076468 ~ 8094847 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other downstream 2125203 8014449 ~ 8024672 (-)
LOC122351350 cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538 other downstream 2995921 7070985 ~ 7153954 (-)
G68188 irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 other downstream 3888806 6246900 ~ 6261069 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other upstream 273501 10433507 ~ 10443619 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other upstream 355266 10515272 ~ 10519457 (-)
mrasa LOC107551943,LOC107663912,LOC107733654,LOC107600440,LOC107738526 other upstream 520152 10680158 ~ 10686627 (-)
LOC122351858 slc10a2,LOC107663831,LOC107567642,LOC107675341,LOC107738529 other upstream 1236660 11396666 ~ 11493120 (-)
LOC122351308 si:rp71-84d19.3,gtpbp8,LOC107663822,LOC107567641,LOC107738531,LOC107733632,LOC107598183 other upstream 1336941 11496947 ~ 11500495 (-)

Expression


Co-expression Network