otc (otc,LOC107555229,LOC107663890)


Basic Information

Item Value
gene id otc
gene name otc,LOC107555229,LOC107663890
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10160341 ~ 10162936 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249109.1
atgtttgcattcaaaaacattatatattttggtcTGAAATCTGCTAAATGTTGCCAGAGCAGGAATTTTAGAGTGGGAAAAGCAGCTCTGGACAGTGTGAACCTGAAGGGCCGCAGCTTTCTAACACTAAAGGATTTTAATGCAGAGGAAATTAAACATATCCTGTGGGTTTCTGCTGACCTTAAGCATCGAATAAAACACAGTGGAGAGTATGTCCCGTTACTTCAAGGCAAATCTATCGCCATGATATTTGAGAAGAGGAGCACTAGGACCCGCATGTCCACTGAAACAGgGTTTTCTCTGTTGGGTGGCCATCCATGTTTTCTCACACCCCAGGATATTCATCTAGGAGTCAATGAGAGCACCACAGACACGGCCAGGGTGCTCTCTGGTCTGGCAGATGTAGTGTTGGCTCGGGTGTATAGTCACTCTTCTCTGGAGCACCTGCATAAAGATGCTAATATACCAATCATAAATGGCCTATCTGACCTTTACCACCCCATACAGATTCTGGCTGACCTATTGACACTACAGGAGCACTATGGCTCATTAAAAGGCCTCACTTTGGCTTGGATAGGAGATGGAAACAATGTTCTTCACTCCTTTATGATGTCACTGGCTAAACTAGGTGTCAATCTAAAAGTGGCCACACCCAAGGGTTATGAGCCAGATGCTAATGTCACTAAAGAGGCTCAGCTTCTGTCCAAACAGTTCGGTACCAAGATGCAATTCCTGATGGATCCAATGGAGGCAGCACGGGACAGTAATGTGCTGGTTACTGACACTTGGGTGAGCATGGGccaagaggaggagaagaagaagagactAAAAGATTTCCATGGTTACCAGATTACTATGAAGACAGGAAGTGTGGCTGCACCAGACTGGACGTTTCTGCACTGTCTCCCACGTAAAACAGAGGAAGTTGACGAAGAGGTTTTCTACTCACCACGGTCCCTTGTTTTTACAGAGGCTGAGAACCGCAAGTGGACCATTATGggtttGATGGTGTGCATCCTGACAGACTATAAGCCACAAATTCACAAactcaaattttaaaaatctgtctgtcatctataattgtaatttatcaTATGTATCATTCTACAAACCAATAGgggtttaataaat

Function

symbol description
otc Predicted to enable ornithine carbamoyltransferase activity. Predicted to be involved in arginine biosynthetic process via ornithine and citrulline biosynthetic process. Predicted to act upstream of or within cellular amino acid metabolic process and urea cycle. Predicted to be active in mitochondrion. Is expressed in ball; brain; liver; and muscle. Human ortholog(s) of this gene implicated in ornithine carbamoyltransferase deficiency. Orthologous to human OTC (ornithine transcarbamylase).

NR:

description
ornithine carbamoyltransferase, mitochondrial

GO:

id name namespace
GO:0006520 cellular amino acid metabolic process biological_process
GO:0016743 carboxyl- or carbamoyltransferase activity molecular_function
GO:0016597 amino acid binding molecular_function

KEGG:

id description
K00611 OTC, argF, argI; ornithine carbamoyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249109.1 True 1131 mRNA 0.44 10 10160341 10162936

Neighbor

gene id symbol gene type direction distance location
sytl5 sytl5,LOC107555233,LOC107663897,LOC107748209,LOC107655524 coding upstream 21096 10117861 ~ 10139245 (+)
asb11 asb11,LOC107748226,LOC107720119,LOC107655497,LOC107600386 coding upstream 42793 10113994 ~ 10117548 (+)
gja8a cx50.5,LOC107748212,LOC107555237,LOC107720117,LOC107600427,LOC107655525 coding upstream 73380 10082276 ~ 10086961 (+)
si:dkey-229b18.3 LOC107748215,LOC107663849,LOC107720115,LOC107655527,LOC107572534 coding upstream 108807 10042165 ~ 10051534 (+)
chaf1b chaf1b,LOC107748217,LOC107663888,LOC107655528,LOC107720114,LOC107572528 coding upstream 121979 10030801 ~ 10038362 (+)
mid1ip1a mid1ip1,mid1ip1a,LOC107655494,LOC107748224,LOC107663855,LOC107555231,LOC107600390 coding downstream 2244 10165180 ~ 10166422 (+)
impg2a impg2,LOC107748205,LOC107655518,LOC107600387,LOC107720123 coding downstream 22810 10185746 ~ 10200828 (+)
LOC122351607 abi3bp,LOC107748202,LOC107655519 coding downstream 45913 10208849 ~ 10226652 (+)
dcbld2 dcbld2,LOC107600392,LOC107655516,LOC107706081 coding downstream 99442 10262378 ~ 10279903 (+)
LOC122351198 LOC107706096,LOC107663847,LOC107663844,LOC107555219,LOC107706098 coding downstream 239409 10402345 ~ 10405495 (+)
G69042 NA non-coding upstream 52157 10107840 ~ 10108184 (+)
G69034 NA non-coding upstream 89450 10070658 ~ 10070891 (+)
G69033 cx45.6,LOC107663873,LOC107748213,LOC107572527,LOC107655501,LOC107720145,LOC107600426 non-coding upstream 97905 10062208 ~ 10062436 (+)
G69032 NA non-coding upstream 98454 10061685 ~ 10061887 (+)
G69031 NA non-coding upstream 98730 10061058 ~ 10061611 (+)
LOC122351843 NA non-coding downstream 12112 10175048 ~ 10179380 (+)
G69089 NA non-coding downstream 257546 10420482 ~ 10420692 (+)
G69090 NA non-coding downstream 259107 10422043 ~ 10422253 (+)
LOC122351945 NA non-coding downstream 260278 10423214 ~ 10435142 (+)
G69080 NA non-coding downstream 285765 10448701 ~ 10457161 (+)
piga piga,LOC107748211,LOC107555234,LOC107663925,LOC107655498,LOC107600385,LOC107720146 other upstream 46985 10092350 ~ 10113356 (+)
thsd7ba thsd7b,thsd7ba,LOC107663893,LOC107751610,LOC107720322,LOC107658187,LOC107658188,LOC107558036 other upstream 593344 9443125 ~ 9566997 (+)
LOC122351827 LOC107568346,LOC107676221,LOC566927,LOC107706103,LOC107706102,LOC108412955 other upstream 999520 9156045 ~ 9160821 (+)
si:ch1073-416j23.1 si:ch1073-416j23.1,LOC107749868,LOC107663920,LOC107556448 other upstream 1010248 9142592 ~ 9150093 (+)
fev fev,LOC107749901,LOC107562104,LOC107663906,LOC107672289,LOC106581833 other upstream 1288708 8867097 ~ 8871633 (+)
si:dkey-100n23.5 LOC107748207,LOC107555230,LOC107720121,LOC107655523 other downstream 4400 10167336 ~ 10174783 (+)
il1rapl1a il1rapl1a,LOC107655515,LOC107600393,LOC107663843,LOC107555221,LOC107706095 other downstream 165795 10328731 ~ 10395230 (+)
creb1b creb1b,creb1,LOC107598164,LOC107738506,LOC107698524,LOC107663917 other downstream 858800 11021736 ~ 11030409 (+)
LOC122352020 uggt2,LOC107600415,LOC107720140,LOC107663813,LOC107655477,LOC108430493,LOC107706079,LOC108266228 other downstream 1302668 11465604 ~ 11490149 (+)
G69527 arhgap15,LOC107563181,LOC107673132,LOC107709415,LOC107555858,LOC107675340,LOC107711394 other downstream 1883563 12046499 ~ 12155804 (+)

Expression


Co-expression Network