asb11 (asb11,LOC107748226,LOC107720119,LOC107655497,LOC107600386)


Basic Information

Item Value
gene id asb11
gene name asb11,LOC107748226,LOC107720119,LOC107655497,LOC107600386
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10113994 ~ 10117548 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249110.1
tgtatgtatgtttttgacTCGTTTTTTAGGTTGTGGGGGGTGCTCACCTCACATTTGAGAGGATGGGGGTGCAAACACTGATAACGGTGGGAGGTGCATTCTTGCCAAGGGGGGTTCTTGTTTCTCTGAAGGCCATATAAACTCCTCTGAAGAGTTTCTCTGCGCTCCATTATCTCAACTGTTGTCTTCCTGCGAGGTCTCTGAGTTGGCTTTTTGTGGAATTTAAAGATGGCTGTGGTTCATGCTGAAGTGAGCGTTTGGAGTAAGCTATGGGATCACAGGTTTCAGCTATATGGAGGACATGTGTGTAATACGCTAATGGCAGGTTCTTGGGATGACAGAACACCTCTACATGATGCTGCTTTGCAAGGAAGATTGCTGCCACTGCGAAGACTGCTTTCACAGGGGTACAATGTGGGAATGGCTACATTAGATGGAATCACACCATTGCATGAAGCATGCGTTGGAGGCCATTTCACCTGCGCTAAACTTCTCCTGGAACACGGTGCTGATGCCAATGCTGTCTCTTTTGATGGAGCCACTCCTCTCTTCAGTGCATGCTGTAGTGGAAACCCTGCCCTCGTCAGCCTCATTCTTCTCTACAGCTCCGTCCAGCATCCAGCTCATCTGCAGAGCTCACCTCTCCACGAAGCAGCAAAGAGAGGTCACACAGCATGTGTTGAAGTGCTGCTGTCTCATGGTGTGAATGTGGACACGGAGGTTCCCAGCATAGGAACGGCTCTGTACTGTGCATGCGAGTCCAAGGCAACAGAATGTGTACAGAGCCTGCTGATCTCAGGTGCTGATGTGCAGTGTGGACGGGGTCTTGACACACCTTTACATGCTGCAACCAGGGTGGGCGGGGCAAAAGAGGTGGAGCTACTGCTAGAGCACGGGGCTGATCGGACCTCAAGGAACTCTGAAGGAAAGAAAGCTCTGGAGCTGACAGCAGATCAGAGCATCAAGCATCTCTTGCAGACTACAGGTCCGTGCTCCCTGACTCAGCTGTGCAGATGGTGTATTCGACGTTCCCTGGGACAAAAAGGACTGAACAAAACCAAGAAGCTTTGTTTACCACATATCCTGAACAATTATCTCCTCTATCATTAAAACACACGTAAACATTCCCTGTCTAGAGCACAGACATGGTTCACATAGTaatcttcttctttttgaataacattttgtacacattttttatctgtaaataatctcttttttattgtgaaagtgtatcttttttgttttgtaataaatatttttatacattgtaTACAAAAATGCTATTAATCTGTTGAAATGAATGTGTGactatatacaaacacacacatatgatgAGTTTCCATATCTAATGTACCATAGTTGtacattattataacacacaaactgtattttctattcCCTTACTCTAAACCTACCTTCCCATAATAAAAACTCAATTTTCTCCCCACAAGGTAAAAATTGACTGATATTACTGTAATTGTGGGGGTCGCACACACATGTCTGCATGCTCACATGAACACTCACTATGCCTACTAATTCACACAGAGTGAAAACCTGACTAAATTGATTAttacatgtgtttttaaatgtcgaGTATTGCCTGAACGAACCAGCAGGTGGCATCTTTAGTATAGATTATTCTAAATCACAGCCCCTATGAATGgctttccacaaaatattattcCTATTTTCAGTTTGCATGTGTTTAGTTC

Function

symbol description
asb11 Acts upstream of or within positive regulation of Notch signaling pathway and positive regulation of transcription of Notch receptor target. Is expressed in anterior axial hypoblast; neural plate; and polster. Orthologous to human ASB11 (ankyrin repeat and SOCS box containing 11) and ASB9 (ankyrin repeat and SOCS box containing 9).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0045747 positive regulation of Notch signaling pathway biological_process
GO:0007221 positive regulation of transcription of Notch receptor target biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249110.1 True 1715 mRNA 0.43 7 10113994 10117548

Neighbor

gene id symbol gene type direction distance location
gja8a cx50.5,LOC107748212,LOC107555237,LOC107720117,LOC107600427,LOC107655525 coding upstream 27033 10082276 ~ 10086961 (+)
si:dkey-229b18.3 LOC107748215,LOC107663849,LOC107720115,LOC107655527,LOC107572534 coding upstream 62460 10042165 ~ 10051534 (+)
chaf1b chaf1b,LOC107748217,LOC107663888,LOC107655528,LOC107720114,LOC107572528 coding upstream 75632 10030801 ~ 10038362 (+)
LOC122351209 LOC107748218 coding upstream 83442 10022693 ~ 10030552 (+)
LOC122351208 LOC107663876,LOC107707766,LOC107724486,LOC107569399 coding upstream 91764 10007942 ~ 10022230 (+)
sytl5 sytl5,LOC107555233,LOC107663897,LOC107748209,LOC107655524 coding downstream 313 10117861 ~ 10139245 (+)
otc otc,LOC107555229,LOC107663890 coding downstream 42793 10160341 ~ 10162936 (+)
mid1ip1a mid1ip1,mid1ip1a,LOC107655494,LOC107748224,LOC107663855,LOC107555231,LOC107600390 coding downstream 47632 10165180 ~ 10166422 (+)
impg2a impg2,LOC107748205,LOC107655518,LOC107600387,LOC107720123 coding downstream 68198 10185746 ~ 10200828 (+)
LOC122351607 abi3bp,LOC107748202,LOC107655519 coding downstream 91301 10208849 ~ 10226652 (+)
G69042 NA non-coding upstream 5810 10107840 ~ 10108184 (+)
G69034 NA non-coding upstream 43103 10070658 ~ 10070891 (+)
G69033 cx45.6,LOC107663873,LOC107748213,LOC107572527,LOC107655501,LOC107720145,LOC107600426 non-coding upstream 51558 10062208 ~ 10062436 (+)
G69032 NA non-coding upstream 52107 10061685 ~ 10061887 (+)
G69031 NA non-coding upstream 52383 10061058 ~ 10061611 (+)
LOC122351843 NA non-coding downstream 57500 10175048 ~ 10179380 (+)
G69089 NA non-coding downstream 302934 10420482 ~ 10420692 (+)
G69090 NA non-coding downstream 304495 10422043 ~ 10422253 (+)
LOC122351945 NA non-coding downstream 305666 10423214 ~ 10435142 (+)
G69080 NA non-coding downstream 331153 10448701 ~ 10457161 (+)
piga piga,LOC107748211,LOC107555234,LOC107663925,LOC107655498,LOC107600385,LOC107720146 other upstream 638 10092350 ~ 10113356 (+)
thsd7ba thsd7b,thsd7ba,LOC107663893,LOC107751610,LOC107720322,LOC107658187,LOC107658188,LOC107558036 other upstream 546997 9443125 ~ 9566997 (+)
LOC122351827 LOC107568346,LOC107676221,LOC566927,LOC107706103,LOC107706102,LOC108412955 other upstream 953173 9156045 ~ 9160821 (+)
si:ch1073-416j23.1 si:ch1073-416j23.1,LOC107749868,LOC107663920,LOC107556448 other upstream 963901 9142592 ~ 9150093 (+)
fev fev,LOC107749901,LOC107562104,LOC107663906,LOC107672289,LOC106581833 other upstream 1242361 8867097 ~ 8871633 (+)
si:dkey-100n23.5 LOC107748207,LOC107555230,LOC107720121,LOC107655523 other downstream 49788 10167336 ~ 10174783 (+)
il1rapl1a il1rapl1a,LOC107655515,LOC107600393,LOC107663843,LOC107555221,LOC107706095 other downstream 211183 10328731 ~ 10395230 (+)
creb1b creb1b,creb1,LOC107598164,LOC107738506,LOC107698524,LOC107663917 other downstream 904188 11021736 ~ 11030409 (+)
LOC122352020 uggt2,LOC107600415,LOC107720140,LOC107663813,LOC107655477,LOC108430493,LOC107706079,LOC108266228 other downstream 1348056 11465604 ~ 11490149 (+)
G69527 arhgap15,LOC107563181,LOC107673132,LOC107709415,LOC107555858,LOC107675340,LOC107711394 other downstream 1928951 12046499 ~ 12155804 (+)

Expression


Co-expression Network