efnb2a (efnb2a,efnb2,LOC107555860,LOC107563180,LOC107675360,LOC105018709)


Basic Information

Item Value
gene id efnb2a
gene name efnb2a,efnb2,LOC107555860,LOC107563180,LOC107675360,LOC105018709
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11982968 ~ 12000692 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249140.1
CGCTCGCAGCTACTTGCAGTACAGTCTCGCGCAGAGAAAAGAGCGGAGTCCCGCAATTCACGCGCACGGCAGTTCAGTCCGGACCTGCAGGGCTCGAGCCGCGGCTGTTCTCTGCTACTGCGAGGGTTCCACGGCGACCCATGAGAACTTTCATTTGACTTcatcgttttgttttattttatttttattttcagtcatcagccattctcattttttttgcttcaccCAGTAAGGCTGCAATTAATTCATTACCGCTCATCTTTTCCAAACTGCCTCGTTCGTTTTTTTGGGGAACTCCGGTGGGTTTTTCCCCCTCGTTTGCCTGCCCGAACGGAATACCTCGCACTTGGAATTGGTACCTGCTTGGTTTATGGTCCGCACCGGGGGGATTAACTTCCATGTCTCCGCGGACATCCAGCACTTCGGCGGCGGCGACACCGGTCGCCTTCCTGTGAGGAATGTACGTGCTCCCCACGGCCGGTTGATAGGAGAGTGCTCCGCTCAGTCGTTTATTTTACCGAATGAGAAACTGCCTGCTGTCCGCGGTGCTGCTCTCTCTCATCTCGAGCAGGACTAATAGAGGAGTAGCTCTTCCCTTCGGGATGGTTCACTTCTAACCGGGCTcctattcaacatttttttttttttttactttttctcctGGAACGGGGGATACTGAGTTTGGATAGGCAGCACTCCAACAAGACGCTTTCTTTTTGTCTAATTAGAAATTCCCGCGGAACGGAATTTGACCGTAACGGTCGTAACGGACCATGGGCGACTCTCTGTGGAGATATTACTTTGGAGTTCTAGTCATCGCGTGCAAGGTGAACCTGTCCCGCGCGCTCATCCTGGACTCCATATACTGGAACACGACGAATACCAAGTTCGTGCCAGGACAGGGTCTGGTGCTGTATCCACAGATTGGGGATAAGATGGACATAGTTTGCCCACGCGTGGAAGGCGGCTCAACGGAAGGAGTGGAGTATTATAAACTCTATATGGTTCCTCTGGAACAGCTAAAGTCCTGTCAGGTCACAAAGGCAGATACGCCTCTACTCAACTGCGTCAAACCGGACCAGGACGTCAAATTCACCCTCAAATTTCAGGAGTTCAGCCCGAACCTCTGGGGCCTGGAGTTCTTCAGGGGGAAAGACTACTACATTATCTcTACTTCTAATGGAACGATGGAAGGGCTGGATAATCAAGAAGGAGGGGTGTGTAAAACCAAGTCGATGAAAATCATCATGAAGGTTGGACAAAACCCCTCTGATCCCATCCCCAACGAAAACCCCACCAGTTACCCTCCCAAACACCCCAACGATGGGGGCAAGGAATCAAAATCGAATGAAGTACTTGACAAGCCTGATGCAGCTCATCAAGGTGAAGAGAAGGGAGATGGAAATAAATCGTCATCGGTTATCGGCTCCGAGGTCGCCCTGTTCGCCTGCATCGCCTCAGCCAGCGTcattgtcatcatcatcatcatcatgctGGTATTTCTCCTGCTGAAGTATCGTCGACGCCATCGCAAACACTCGCCTCAGCACGCCACCACGCTGTCACTCAGTACATTAGCCACGCCCAAGAGGGGTGGCAGCGGCGGCAACAACAACGGCTCGGAGCCGAGCGACATCATCATCCCACTGCGGACTGCTGACAGCGTCTTCTGCCCGCATTACGAGAAAGTGAGCGGCGATTACGGACACCCAGTTTACATCGTACAGGAAATGCCGCCGCAAAGCCCAGCAAACATCTATTATAAAGTGTGAAAGCGGGCACGCTTCTTTCGGACGTTTCAATTCTAACCCCCCCCCCATGTGCCCCTCAATGAACCCCCCGTGGGCGGCACCCTCGTCCCGCCCTctcttatttttttgctgttcttgtttattttacaatattcctGATTATTACTCTCAGTATAGTTGTTGCTGATGGTGGAGTGACACTCCTGATTCGCTGCTCTTGCACCTGCAAAAACGAAACAAatcaaaaactgacaaaaaaacagaaacccTAGGGAAGATTGACATGCACTATATCGGATACTTTAGTGCGTGCACGAGGGAGCGTGTGTGAATCAGACGAGCGGGGGAGAGGGGGGTTGAGGGGGTGGCCGGGAAAAGAGAGGTCAAGACAATAATTCTTCCTCTATTTTCTACTACGTCATCTCCCTCAGAGACACAACACATGGAGAAGAGAAGTGACGTGACAGTatcaaacagcaagaaatatgAACTTGAGCTGTTTATTTAGCTCGGCCGATTGGCTGATCCATCTCGAAACAGGAAGTGAATGCAGCCTATTGGCCAGAGCTAAAGGAAGTGAATTTATCGAGGAAGCAGGAAGCTCCCCGGAGCCTACTGTTGGACATTTGAATGGACATCATCTGTTTTTGCACGTTCACTCGTACTGTTTTCATTTACGTTAGCTCTCCTCATTTGCTCACCTCTACAAAATGACTCACGATGTTTACTTGAAGTCTTTTTGTATGGTCATGCGTCTTACTTGCATTTCTTTCTGTCATTCCCAGTGCAGTCCACTTGCAGATTCGTTTGGTAGAAGACTAATAGGTATCGTCATAGAGATCCTTTTGTGCTGGTTTATGTGCTGTTTAGTAGCGTGgaagacacatacacacatttcatTTCGTAATACGTCTGCTGACAAGGCTGGAAAAAATGAGACACGTagagaaagaaggaaggaaggaaggaaagaacGTTGATATTTGGTACCGTCGCTGTCCTGTTGCCTGCTGGGAAGGTGGAGGACCCACATGAACACTTTAGCAGCACTTTGAAAGCCTCGCCACCTTTTCCACATAGAGTACAAACTGAAGAAAACacattaagagagagagagagagaaagagagcaggaaGCGAATCACTCAAGGCTTATTagcaaaaattacaaaaaatggccGCCTTCCCCAGGCATGTCGCTGCAAAAGTTCCTGTTTTTCTAGTATTTCTGccatcgcacacacacacacacacacacattctcccTCACCAACGGCCAGTGCAGATTGTGGAAGAGAGGAACTGGTGCTCTACTTTTTTCGCTCAAAAGCACAGAGACATCGAGATCTAACtgtttagtttgaaataaaacaaaagattgAATTAGCGTTTCTTTATGGATTTGTTTAGTGCTAGATGAAAACGGTTGGAAAGAATGCAAGTAGACTTTATTTATGATGGCCTACAGACAGGTCGGCGTGAGACAGCaagaatatgaataatttatggAAAATCTGCACATTATGCAAGCTTCAAGTTGTCCTTTTCGTTAAAAGATATTTCTCCATCTCGCTATTTGCTTTTTTCCATCGATCTCTACACGAATAGCTGCCTTttgaccacaaacacacacatacccgCACAAAAAGCACATGCGCTTATGGCCAGGGAAGGGGCGGCTTTGGAAGGAGCCCTCAGGGAAAACAGCATGTTGGGTTTTAAAATAGCCGAAAGGAATGAGAGGGAAGGGCCAGAAACGGACCAAAGGAAGGGCACGTCTAACAGAGTCCTGGCTAAACCAACTTCTCCGGCCTGCCTGTCTCTGTTGATGAAGCTCAGATGTGCTCTGGGTTGAAATTAGGCCCCTTAATCTGGAAGGAAAGCAGTAGACGTGGGTTAGCGAGCATACCAGATGAGAACGGGCGCAGGCTAAATGCAGTAAATTGCATGAAATGAGATCTTTCAGGCTCAAATTGTGGGAGGTTtctggaggagaaaaaaaaacacattatgatCGATGGAGGTCACAAGTGGACTTAGCGTGCGTTTTAGAGAGGAAGTTGCCGAGCAGAGGCCAGAGTATCCCACAACCCACAGGATTTTGGACGTCCGTACGTGTGTGTCGTCATTTGTGAGAAACCCTTGGTGAGCAATGCCAGCCGGCAGACAgttatctttatttgtttcttgcaTCGAAATTGTTCACCAAAGGTGGAGTTTGAGAGTTGAAAGTGTCCACAAACTGACTGTGGTTCACCACAGTCAAGCATTAACTGTTCAtccattttgttttcacttgttcATGGAGGTTCTTGAATCTCACCGAGAAGCCAAGCCTTGTGTGATCGGAGCTTTGTGCCTCTTTAAGAGGCCACAAAATCtgcaaatatgcaatttttatttatttttataacaattgagaaaaaaagatgatatACGTTCACCTATGGAAAAGTGTTCTTAACcactgaaaattaaatgaaacaatacagcatacaaaaacacaacaaccccagtgtgttattattattattattatttgattttttactTTGTGCTGTAGGTTCGAGGTAAACTGTGAAACATGAActcttacacacatacatattgaAGACTGAGCAGTTGTTTTAAACTTtaggagacacacacaaacacgtactACACAAACTACAAACATATTGCTGTTCGGTTGCTGTCCCATATGGGCTAAATATGACAATCTCCTTAGTTTCTTTGAATCCGAAGACACTGTCCCGGAAAGCAGGTTGCAAACGTTCCCGTAACATTTTAGGAGCGGTAGGACTTAACTAGTAGCGCAAGATGTTGCACCGATGTGGGTGGAAGGTTTGTGGAAGCGTCTGGGAGAAGTGTCTTCGGGCCACTGTAAAATGCCTTGCTTGTATGGTCACCCTGAGTTCACGAGACTCTTGTTTTTGCACCGTACATCTGTAGGTGAGAGGCTGTAAATACGTTATTGTTTGTATTGTATATGGATCCCCGGTTGTTACGATAGCCTTATTCTCACATTtctagcaaataaaaaaagttacgaaaaaaaaaaaaaagcaaaaaaaacaaaaaaacatgaatcacTTCAGTTAAAAGAGAGCATACtaatttttttggtaaataactTGTGTAAATATCGACGACAAACCCAATAAATCGTTTTTTATAAACTCttaagtaaaatgttttgtatagaATTGGAATTTTTTGCTATGTATTTTAGCTAGCACTCGTCAGACCCCTCCCACTCAACCCTTTTGCACTGTTCCCATGGTGATctggtttaaaaatgaaaatgagatagAGAATTGCCAAACTGACTGCTTGCTGCATATTTGTGCCATACGTGTGTAccatagatatttatttaattagttctttgtttttgctttttttctgttggattttttttctaccCAGTTTGTACGCAACCTCAGTATTATCATTTGAGTTTTCCCCCAACTTCTCCGTTTCCTGTTATCTTTCTGTTGCTATCGTTTCCCAATGGCCCATGCGCCCACCTTCTCTCGCAGTAAGATCTGGTCAGGACGTGCAACCTTATAAAGTCATAGAAATGAAATGGCACACATTCCACCAGTCTGTtacaaactgaaaatgtttttcaataaaatgtttttcctatGGAA

Function

symbol description
efnb2a Predicted to enable ephrin receptor binding activity. Acts upstream of or within several processes, including angioblast cell migration involved in selective angioblast sprouting; nervous system development; and optic vesicle morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including brain; germ ring; hindbrain neural keel; immature eye; and vasculature. Orthologous to human EFNB2 (ephrin B2).
efnb2 Enables ephrin receptor binding activity. Involved in several processes, including cell migration involved in sprouting angiogenesis; ephrin receptor signaling pathway; and positive regulation of neuron death. Located in plasma membrane.

NR:

description
ephrin-B2

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0050920 regulation of chemotaxis biological_process
GO:0002042 cell migration involved in sprouting angiogenesis biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0008039 synaptic target recognition biological_process
GO:0007412 axon target recognition biological_process
GO:0007155 cell adhesion biological_process
GO:0035475 angioblast cell migration involved in selective angioblast sprouting biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K05463 EFNB; ephrin-B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249140.1 True 5406 mRNA 0.45 5 11982968 12000692

Neighbor

gene id symbol gene type direction distance location
LOC122352021 hs6st3b,LOC107555209,LOC107733651,LOC107663930,LOC107600438,LOC107720131,LOC107655503 coding downstream 518554 11454069 ~ 11464414 (-)
gtpbp8 si:rp71-84d19.3,LOC107663822,LOC107567641,LOC107738531,LOC107733632,LOC107598183 coding downstream 578672 11400551 ~ 11404296 (-)
LOC122351856 tlr20f,tlr20.2,LOC107598181 coding downstream 586305 11392240 ~ 11396663 (-)
tlr20.4 tlr20.2,tlr20f,LOC107598181 coding downstream 593590 11386377 ~ 11389378 (-)
lcmt2 lcmt2,LOC107663870,LOC107698535 coding downstream 751280 11225956 ~ 11231688 (-)
arglu1a arglu1a,LOC107555859,LOC107673121,LOC107711396,LOC107577473,LOC107675355,LOC106586866 coding upstream 3312 12004004 ~ 12009937 (-)
zeb2a zeb2a,LOC107711399,LOC107675348,LOC107563183 coding upstream 196062 12196754 ~ 12244788 (-)
itm2bb itm2bb,itm2b,LOC107673124,LOC107709423,LOC107601060 coding upstream 444860 12445552 ~ 12452338 (-)
slc39a10 slc39a10,LOC107673130,LOC107709428,LOC107724029,LOC107675357 coding upstream 618584 12619276 ~ 12640868 (-)
LOC122352069 hacd2,LOC107660639,LOC107741899,LOC107661144 coding upstream 722709 12723401 ~ 12729104 (-)
LOC122351998 NA non-coding downstream 28734 11790781 ~ 11954234 (-)
G69467 NA non-coding downstream 617149 11358950 ~ 11365819 (-)
G69396 NA non-coding downstream 952475 11029377 ~ 11030493 (-)
G69362 NA non-coding downstream 1028983 10947044 ~ 10953985 (-)
LOC122351427 NA non-coding downstream 1036224 10930480 ~ 10946744 (-)
G69596 NA non-coding upstream 85022 12085714 ~ 12156439 (-)
LOC122351183 NA non-coding upstream 267420 12268112 ~ 12270147 (-)
G69607 NA non-coding upstream 279101 12279793 ~ 12280197 (-)
LOC122351337 NA non-coding upstream 303022 12303714 ~ 12321820 (-)
G69639 NA non-coding upstream 391621 12392313 ~ 12393474 (-)
LOC122351308 si:rp71-84d19.3,gtpbp8,LOC107663822,LOC107567641,LOC107738531,LOC107733632,LOC107598183 other downstream 482473 11496947 ~ 11500495 (-)
LOC122351858 slc10a2,LOC107663831,LOC107567642,LOC107675341,LOC107738529 other downstream 489848 11396666 ~ 11493120 (-)
mrasa LOC107551943,LOC107663912,LOC107733654,LOC107600440,LOC107738526 other downstream 1296341 10680158 ~ 10686627 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other downstream 1463511 10515272 ~ 10519457 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other downstream 1539349 10433507 ~ 10443619 (-)
gtdc1 gtdc1,LOC107709416,LOC107555857,LOC107563182,LOC107675364,LOC107673117 other upstream 90439 12091131 ~ 12194961 (-)
G69650 NA other upstream 421737 12422429 ~ 12423446 (-)
lrch1 lrch1,LOC107709425,LOC107601076,LOC107673127,LOC107724026 other upstream 517592 12518284 ~ 12582425 (-)
LOC122351186 adcy5,LOC107555914,LOC107660638,LOC107596066,LOC107661140,LOC106586396,LOC107745452,LOC107668560,LOC107695824,LOC107716189,LOC107568450,LOC108433131 other upstream 707284 12707976 ~ 12720690 (-)
LOC122352189 NA other upstream 737352 12738044 ~ 12738171 (-)

Expression


Co-expression Network