fdx1 (fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505)


Basic Information

Item Value
gene id fdx1
gene name fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10515272 ~ 10519457 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249146.1
TACAAATTGACGTCACGCCCGAACGGCACTATTTCCGCCTCGTATAAAGAGTCGAAAGTTTAATTCCATCACACATGCGACGGGGGTAGTTAGTTCTTCCACGGCCTGTCAACAATCTCACAATGTCTGCATGTGCACTGCGGGTGTTTCTCCAGCGAGCGGCTGCGAGGCGTGAAGCGTTCAGTCTAACGAGAGCGTTCCCTCAAAGCGTGACCGGGAGCTACACACACAGCAGACGAATAAACACCTTAACGAACGCGCTACGGGCTGAGGAGAAGGTGACGGTTCACTTTCTGAATCGAGATGGAAAAAGGATTACGGTGAAAGCTTTAACTGGAGAATCACTACTCGATGTTGTTGTTAACAATGATCTAGATATTGATGGATTTGGTGCATGTGAGGGAACTTTAGCCTGCTCTACGTGCCACCTTATTTTCGAGGAGGCCGTTTATAAGAAGCTTGGAGCCGTTTCTGACGAGGAAATGGACATGCTGGACTTGGCTTATGGGCTTACAGACACATCTCGCCTGGGCTGTCAGGTGTGTTTGAGGAAGGATCTGGACGGCATGATTCTGCGCGTGCCAGACGTGATCTCTGATGCTCGAGTTGAGAGTGAAAAAGAGTCCTCCACGGCCCCACCCAAAGtataatctataaaataaagCCCCGGCTGTATCTCATAAACGCTGCATTATGGAGCTATCTTTAATAACAGGTATTTTAATACGTactattttaatagaaaactaaaatataaatgataacatttatcgtttaatattatttacatgttgACGTAAGTAGTTTTCATAATTTTGGTgatttgcaattttttaattgtgcagaTTCTGCAATTCTTTGTGTCACAATGAGAGGTGGGAGCATCttgttatacatttttgaatgcgGAATTAACTGTAActgatttatttcaataaatattatgtttaactttttaa
>XR_006251803.1
TACAAATTGACGTCACGCCCGAACGGCACTATTTCCGCCTCGTATAAAGAGTCGAAAGTTTAATTCCATCACACATGCGACGGGGGTAGTTAGTTCTTCCACGGCCTGTCAACAATCTCACAATGTCTGCATGTGCACTGCGGGTGTTTCTCCAGCGAGCGGCTGCGAGGCGTGAAGCGTTCAGTCTAACGAGAGCGTTCCCTCAAAGCGTGACCGGGAGCTACACACACAGCAGACGAATAAACACCTTAACGAACGCGCTACGGGCTGAGGAGAAGGTGACGGTTCACTTTCTGAATCGAGATGGAAAAAGGATTACGGTGAAAGCTTTAACTGGAGAATCACTACTCGATGTTGTTGTTAACAATGATCTAGATATTGATGGATTTGGTGCATGTGAGGGAACTTTAGCCTGCTCTACGTGCCACCTTATTTTCGAGGAGGCCGTTTATAAGAAGCTTGGAGCCGTTTCTGACGAGGAAATGGACATGCTGGACTTGGCTTATGGGCTTACAGACACATCTCGCCTGGGCTGTCAGGTGTGTTTGAGGAAGGATCTGGACGGCATGATTCTGCGCGTGCCAGACGTGATCTCTGATGCTCGAGTTGAGAGTGAAAAAGAGTCCTCCACGGCCCCACCCAAAGtataatctataaaataaagCCCCGGCTGTATCTCATAAACGCTGCATTATGGAGCTATCTTTAATAACAGaTTCTGCAATTCTTTGTGTCACAATGAGAGGTGGGAGCATCttgttatacatttttgaatgcgGAATTAACTGTAActgatttatttcaataaatattatgtttaactttttaa

Function

symbol description
fdx1 Predicted to enable 2 iron, 2 sulfur cluster binding activity; electron transfer activity; and metal ion binding activity. Acts upstream of or within negative regulation of epiboly involved in gastrulation with mouth forming second. Is expressed in brain; digestive system; heart; and pleuroperitoneal region. Orthologous to human FDX1 (ferredoxin 1).

NR:

description
PREDICTED: adrenodoxin, mitochondrial

GO:

id name namespace
GO:0051536 iron-sulfur cluster binding molecular_function

KEGG:

id description
K22070 FDX1, ADX; ferredoxin-1, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249146.1 True 959 mRNA 0.42 4 10515272 10519457
XR_006251803.1 False 829 transcript 0.46 5 10515272 10519457

Neighbor

gene id symbol gene type direction distance location
rnf17 rnf17 coding downstream 10806 10487697 ~ 10504466 (-)
mcf2lb LOC107663886,LOC107555216,LOC107720127,LOC107655510,LOC569231 coding downstream 36187 10462995 ~ 10479085 (-)
LOC122351939 LOC107720137 coding downstream 52750 10446980 ~ 10462522 (-)
LOC122351938 LOC107720137,LOC107655483 coding downstream 61136 10447383 ~ 10454136 (-)
rnaseh2b rnaseh2b,LOC107663845,LOC107555203,LOC107720151,LOC107655484,LOC107706085,LOC107600411 coding downstream 95886 10416256 ~ 10419386 (-)
uggt2 uggt2,LOC107600415,LOC107720140,LOC107663813,LOC107655477,LOC108430493,LOC108266228 coding upstream 12196 10531653 ~ 10558579 (-)
LOC122351611 LOC107733620,LOC107663814,LOC107555196,LOC107720141,LOC107600416,LOC107655476 coding upstream 86737 10606194 ~ 10609391 (-)
zgc:162780 zgc:162780,LOC107551941,LOC107566157,LOC107738501,LOC107733635 coding upstream 310457 10829914 ~ 10833116 (-)
zgc:162396 zgc:162396,LOC107551942,LOC107733630,LOC107663909,LOC107568094 coding upstream 313805 10833262 ~ 10835970 (-)
fzd5 fzd5,LOC107551950,LOC107733649,LOC107698527,LOC107598163,LOC107738508 coding upstream 521835 11041292 ~ 11045462 (-)
G69231 NA non-coding downstream 68505 10445277 ~ 10446767 (-)
G69228 NA non-coding downstream 70631 10444293 ~ 10444641 (-)
G69223 NA non-coding downstream 88807 10426227 ~ 10426465 (-)
LOC122351639 NA non-coding downstream 251825 10253933 ~ 10263447 (-)
G69157 NA non-coding downstream 273060 10117793 ~ 10242212 (-)
G69346 NA non-coding upstream 318055 10837512 ~ 10844040 (-)
LOC122352018 NA non-coding upstream 330366 10849823 ~ 10908594 (-)
LOC122351427 NA non-coding upstream 411023 10930480 ~ 10946744 (-)
G69361 NA non-coding upstream 424982 10944439 ~ 10945055 (-)
G69362 NA non-coding upstream 427587 10947044 ~ 10953985 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other downstream 71653 10433507 ~ 10443619 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other downstream 605094 9908188 ~ 9910178 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other downstream 2420425 8076468 ~ 8094847 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other downstream 2490600 8014449 ~ 8024672 (-)
LOC122351350 cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538 other downstream 3361318 7070985 ~ 7153954 (-)
mrasa LOC107551943,LOC107663912,LOC107733654,LOC107600440,LOC107738526 other upstream 160701 10680158 ~ 10686627 (-)
LOC122351858 slc10a2,LOC107663831,LOC107567642,LOC107675341,LOC107738529 other upstream 877209 11396666 ~ 11493120 (-)
LOC122351308 si:rp71-84d19.3,gtpbp8,LOC107663822,LOC107567641,LOC107738531,LOC107733632,LOC107598183 other upstream 977490 11496947 ~ 11500495 (-)
gtdc1 gtdc1,LOC107709416,LOC107555857,LOC107563182,LOC107675364,LOC107673117 other upstream 1571674 12091131 ~ 12194961 (-)
G69650 NA other upstream 1902972 12422429 ~ 12423446 (-)

Expression


Co-expression Network