chpfa (chpfa,LOC107749870,LOC107663851,LOC107571864,LOC107672254,LOC107743933)


Basic Information

Item Value
gene id chpfa
gene name chpfa,LOC107749870,LOC107663851,LOC107571864,LOC107672254,LOC107743933
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8966861 ~ 8976999 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249163.1
GAGCCACTGACACGTACGAATGCCTCAATAATTTGTAGGAAGGTGATACAGTTACAGGAAAGGAATACGTCCAATGCATTTCCGTTAGCAATCGAAACGCTTTCTTAATGTGCGCTACTCTGTTCAGAAGCTCGCGTTTAAAGGAGGTGTGTACGGCACCAGTAGTCGGAGTACAATGAGGTTTTCTATGTTGATCGGTCTGTTGAGGCCGATCGGCCCGGTTATTATCGGGATCTCTCTGGGATTTACTCTGAGTTTGCTGAGTGTGAGTTGGGTAGAGGAGAGCTGTGATATCAATACCATAGCAGATGAAGGAATCGTTTTATCTCAGGACGGAAGTCTGAAAGGAGCTCGGAGACCCAACTCTATTTCCACTGGGAGTGAtggtgaggaggaggaggaggatttCCAGCCGAGAATAATCCCATATAAACCAGTCAAACAATCTCAGCCCAAGAAACTTTTCAGGGCGAAATACATCAGCACAGAGCTGGGGATCCGAGAGCGTCTTTTTGTGGGAATACTGACCTCCAAAAACACCATCAACACTCTAGGTGTGGCTGTCAACCGCACCATCAGCCATCATCTGGACAATGTTGTGTTTTTCACTGGTACGCGAAACCGCAAGATCCCCCACGGGATGGTCGTGGTCACCCACGGTGATGAACGCCTCATCTGGAACATGTTCCAGACCATCAAGTACATTCTAGAACACTACATCACAGAGTACGACTGGTTCTACCTCGCCCAGGACGACACGTACACTCAGGCGGATCGTATCAAGACTCTGGTGGAGCACTTAAGTATGAGCCGGGTGCTGTATATGGGCAGCCCAGAAGAGTTCATCGGAGGTGAGATGCAGGGGCGCTATTGCTATGGGGGTTTCGGATACCTGCTGTCCCGCAGTCTTCTGCTGAGGCTCCAGCCCTTCCTGGAGAATTGCAGGAACGACATCCTCAGCGCCAGACATGACGAGTGGCTCGGGCGATGCATCATTGACTACGCTGATACCCACTGCGTAGAAGAATTTGAGgggcagaagtattattattatgaaatggGAAAAAATTCTGACCCCAGTAAGGAAGATAATGGGCAGTTTAAGAATGCATTGACCGTCCACCCAGTGTCTGATCCTGAGCAGATGTACAGACTTCACAAACACTTCACTGAGATTGAGCTGCAGAAGACTTATGAGGAAATCGAAAAACTGCAGgcagaaataaaaaatgtgagtGCGGTGGCTTTTGAGGGCAACCGTAGTGCTTTGTGGCCTGTTGGAATCAGTCCACCCTTTGAGCCAAAGACTCGTTTCGAGGTCCTCCGGTGGGATTACTTCACCGAGGATCAGGTATACTCGTGCATTGATGGCTCTCCGAAATGCGAGCTCCGTGGAATCGATAAACTGGATGTAGCTGACGTCATTGAGACGGCTATGGGTGAGCTGAACAAGAAGTACAAACCCGTTCTTCACCTGAAGAAGCAGCAGCTTATTAACGGATACAGGCGCTTCGACCCGACCAGAGGGATGGAGTACACCCTGGACCTCCAGCTGGAGGTGGTTAACCAGAAAGGACACAGTCGCTCCATCACCAAGAGGGTCCACCTGGTCAGGCCTCTCAGTCGTATCGAGATCATCCCCATGCCTTATGTTACAGAAGCCACTCGAGTCCATATCATCCTCCCCGTCACTCTTCAAGAACGAGAGCATGTTCAGCAGTTTTTAGAAGTGTACGCCACAAACGCATTTGAAACTAGTGAGAATGCCATCTTGACCTTTCTTTTTATCTACGATACAATCGAGGCCCAACAGGTTAACCAGAATGACATCTTTGCCAACGTCAAAGCGCAGATCGGTGCTTATGAGCACCGGTACCCCACGGTCAAAATCCCCTGGATCAGCGTTAAAAGTGAAAGCCCCTCTCAAATCAAATTCATGGACATCATCTCCAAGAAGCACCCGGTTGACACGTTGTTCTTTATCGCAACTGTGAAAACCAGCATCAACTCAGAGTTCCTTAATCGCTGTCGGATGAACTCCATCAACAGCTGGCAGGTCTTTTTTCCCGTCCATTTCCAATACTACAATCCCGACATTGCTTATCACAACCAGCCTCTTCCCAATACGATGGATTTGGTCAAAGAGTCCGGCCTCTTTGATCGCAGTTCCTTCACAGAAGCGTGTTTCTACAACTCGGACTACATGGCGACTCGGACACGCATGTCTTCGGATGTCCAGGAGAACGAGGAGATCCTGGAAAACCTGGATATATATGACATGTTTGTCAAATACTCTGGCCTCCATGTTTTCCGAGCAGTGGAGCCGGCCCTTCATCAGAAATATAGCTACCAGCCGTGTAATCCTCGACTTAGTGAAGATATCTACCAGAGGTGTGTGCAGAGCACCCTGGACAGCCTGGGGTCACGCTCTCAGCTCGCCATGCTGCTATTTGAACAGGAACAAGGCAACAGTACTTAAAACCAAACTTTGAAGATCTTGAGATGGCCGAGAGGCGATAGACGGTTTGTTTTTTGTCCATTGGGCTGATGCTTTACTAGTAGCCGGTCTGTGGAGTCACAGTACTGGGCAAACAAAAATGCTGTCGGTACCAAAAGAAAgactaaaaacatttgaaatctatttaaaaatagcagatttttaaatgacaactgGATTTATGATTTGCTATCTTTTCTTTGGAGCAGGTTGGTTTATGTTGGCTCTTAAAGCAAGCAGCTGGTTGCTGTAGAAATGATCACTACCGTAACGTTTCTAAATCGCCGTGCCTTCAAAAATATGCTGTCCTTTCATAATACTTTTGTCTCGTCATCGCAGACACTTTTGCTCAAGCTGATTTGTTTAATGTAACAGGGTTTTTGTCGTATGAAGGAACCGTATCCAGATTCTAACAATGCTTCAGTCAGTTAACCCCCTAGTATTAGCTTGTTAAATCTACAGCTGATTTTAACAAGGTAAAAATCATTGTCTTATTCACCATTCGtgccaaaaaacaaatattgagaCAGTTTATTGACCGTTTCGAACACTATTTTGCCCAAAGTTTTAACCAGCGTGGTTCCATACTTTCTGAAATGTATGCTTGAATTCTGAACAGCAGAACACAGATGCAAATACctgcatataattattattatttttattttttttttaaccattgaAACCGCCTCAAAGAGATTTTTCTGATGAAACAAGTTAACTTTTGCACTAATACTTTCATAGCAAGTCCGTCTTGTATATCAGTAATGCTGCACAATACGCctgtcaaaacatttcattctgttctgGAAAGAATATAGGGTGCATTACATGGTTATAGTTAGTTCCTGTTCTGTCTACCAGAGAGGAGTGCAATACTAGTGCAATACTGTTCAGATGGTGTAGTGTATTGAGCCTGCTGATGGAAACACTCCAGATGAGTTGAACACATCTATTGAACATATTTCTGAAGATGCACTATAGAGAGCCTCTATTACGTACCATTCCAAACacttcacaaaacaaaatgtgttttcgTGACAGTATATTAGGTTATATAAGATAATTCCgatttgtttgtgtataaagATTTTGTAGGtctctggttttttttttttggtccctGTTTCTTGGTACAtgtgtttactgtatttacttagtgttgtgttaaaatgtttttggtatttttattattattattttttttatttaaacaatcaTAATCTCAATGCAGTACACTGACAACATCTTACAAAGTGACTTGTGTTACACAATATCATGATGCTGGATGTCAAATGATTTTGCGTACAAGAGCTGTGAAATAGGTTTTTACAACGTGCTATGTTTTGAACGTTTTTAAATGACACATGCACAACATGAATGAACGCATCACAAAATAAGCACAGATTAAAGCCGCTACTGGCCTTTAGGGGTCAGCAAAGGAGCATGGGAATACCTGCTCTCGGAAATGTAGAATTTCACAGGACTGTTTCTTAACCTCAcctttgttgattttttttttttcactaaatattCTTTATGAATCTgttgaattttgttttaatattattgtacaaaatttttaataaagattttattttaggg

Function

symbol description
chpfa Predicted to enable glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity. Predicted to be involved in chondroitin sulfate biosynthetic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; cranial cartilage; mesoderm; proctodeum; and shield. Orthologous to human CHPF (chondroitin polymerizing factor).

NR:

description
PREDICTED: chondroitin sulfate synthase 2

GO: NA

KEGG:

id description
K00747 CHPF; chondroitin polymerizing factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249163.1 True 4102 mRNA 0.43 4 8966861 8976999

Neighbor

gene id symbol gene type direction distance location
umps umps coding upstream 134959 8827690 ~ 8831902 (+)
itgav itgav,LOC107663834,LOC107672211,LOC107752904 coding upstream 142470 8801297 ~ 8824391 (+)
zc3h15 zc3h15,LOC107562108,LOC107663835,LOC107749874,LOC107752875,LOC107672221 coding upstream 168926 8793317 ~ 8797935 (+)
znf804a znf804a,LOC107562107,LOC107749875,LOC107752876,LOC107672201,LOC107663892,LOC107560471 coding upstream 264566 8651167 ~ 8702295 (+)
nup35 nup35,LOC107663916,LOC107749876,LOC107668364,LOC107752922 coding upstream 396864 8566454 ~ 8569997 (+)
hnmt hnmt,LOC107751616,LOC107720324,LOC107663827,LOC107658225,LOC107577691,LOC107558040 coding downstream 593401 9570400 ~ 9574754 (+)
spopla spopla,LOC107751611,LOC107556446,LOC107720326,LOC107558043,LOC107658226,LOC107663914 coding downstream 624987 9601986 ~ 9610746 (+)
LOC122351877 ugt1a7,ugt1a5,ugt1a6,ugt1a2,LOC107663839,LOC107556441,LOC107732349,LOC107658228,LOC107658227,LOC107558044,LOC107720327 coding downstream 651615 9628614 ~ 9652625 (+)
LOC122351880 ugt1a4,LOC107663839,LOC107556441 coding downstream 656154 9633153 ~ 9636711 (+)
LOC122351879 LOC107558046,LOC107658227,LOC107558044,LOC107720327 coding downstream 660392 9637391 ~ 9639325 (+)
LOC122352063 NA non-coding upstream 106482 8859473 ~ 8860379 (+)
G68808 NA non-coding upstream 139815 8826212 ~ 8827046 (+)
LOC122351403 NA non-coding upstream 351877 8600724 ~ 8614984 (+)
G68678 NA non-coding upstream 744044 8222587 ~ 8222817 (+)
G68668 NA non-coding upstream 760898 8203853 ~ 8205963 (+)
G68879 asic4a,asic4,LOC107672268,LOC107663852,LOC107560474,LOC107749871,LOC107571863 non-coding downstream 70461 9047460 ~ 9078537 (+)
G68880 NA non-coding downstream 86121 9063120 ~ 9064676 (+)
G68895 NA non-coding downstream 199325 9176324 ~ 9178926 (+)
G68896 NA non-coding downstream 203752 9180751 ~ 9184568 (+)
G68897 NA non-coding downstream 203905 9180904 ~ 9194303 (+)
fev fev,LOC107749901,LOC107562104,LOC107663906,LOC107672289,LOC106581833 other upstream 95228 8867097 ~ 8871633 (+)
cryba2b cryba2b,LOC107749902,LOC107562110,LOC107663929,LOC107566327,LOC107560461,LOC107672280 other upstream 100556 8863387 ~ 8866305 (+)
igf2bp2a igf2bp2a,LOC107749880,LOC107668393 other upstream 460718 8460744 ~ 8506143 (+)
sumo3b sumo3b,LOC107668404,LOC107596521,LOC107749883,LOC103392195 other upstream 533378 8431111 ~ 8433483 (+)
si:ch211-167j6.3 NA other upstream 624110 8341295 ~ 8342751 (+)
si:ch1073-416j23.1 si:ch1073-416j23.1,LOC107749868,LOC107663920,LOC107556448 other downstream 165593 9142592 ~ 9150093 (+)
LOC122351827 LOC107568346,LOC107676221,LOC566927,LOC107706103,LOC107706102,LOC108412955 other downstream 179046 9156045 ~ 9160821 (+)
thsd7ba thsd7b,thsd7ba,LOC107663893,LOC107751610,LOC107720322,LOC107658187,LOC107658188,LOC107558036 other downstream 466126 9443125 ~ 9566997 (+)
piga piga,LOC107748211,LOC107555234,LOC107663925,LOC107655498,LOC107600385,LOC107720146 other downstream 1115351 10092350 ~ 10113356 (+)
si:dkey-100n23.5 LOC107748207,LOC107555230,LOC107720121,LOC107655523 other downstream 1190337 10167336 ~ 10174783 (+)

Expression


Co-expression Network