asic4a (asic4a,LOC107672268,LOC107560474,LOC107663852,LOC107749871,LOC107571863,LOC106586149)


Basic Information

Item Value
gene id asic4a
gene name asic4a,LOC107672268,LOC107560474,LOC107663852,LOC107749871,LOC107571863,LOC106586149
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8978518 ~ 9048802 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249164.1
TGGGACTAAGCTGGGGGTGGATGAGTCGTGGAAGGGGGGCGACATTAAAATCCACTGACCCCCCTAACGCTCTCAGCTAGTCCGGGATGTTCAGCGAAGCAGCCTTTGACGGAAACTTATTGTGGTCAAGGGGTAAGAAACCGTCTCAAACAAGTGGATTAAGTGAGAGAGAGCGCAAGCGAGGGGGAAGCGAGTGTATACgtacgcatgtgtgtgtgtgtgagagagagagagagagagagagagaaagcgagaggaCGAGAGCGTGGGGGGTGTTTGAGTTGCCGCTGCTTGTGCCGGTGAAGAGGAAATAATCACAGTGTTGCTTCCTCATGAATTATTAAGAAGCCCCCCCAGCCTCTTTTAGCTTGAGTCAAAATGCTGCATTTTCCTCTGTTGCTGTAAAGCAAAGAGGAGatttgttgtatgtttttttttttgttgttgttgtttttgctttcctAGGTGTATCACAGCTGGTAAGCAGGACTCGTAAGCGTGCCGAACAAGTGCTCAGATGAGCAGTCCGAGCGCAGCACCAGGAGCATCAGCACTGGAGAGCTGGAACTGAGAGACAGAAGCAGTTCCTTCCACTGCACGCGACAGCAGCGGCCactctcgctctcgctctcgctctcgctctgcatgctttttttcccttcatttcTTTCTGGAGTTGAGATCTTGTTCGTCAGAGCAACGGGACTTAGTGGATACTGGGGCTCCAAGCTGTTATCCAAGCATCCCAAACGCAGACCTGGCTGCCCACATGCCGATCGAATTTGTTTGCAAAATCAAATTTGCAGAGGAGGATGAGAAGCAGAAAGGCAACCAGGATGGGGACAAGGAGAGCCTGATCGAGGAGAGCTGCAGCCCCCCAGCCAAAGACCTGGCCGGCTTCGCCAATGCGTGCTCGCTCCATGGGATTAACCACATCTTTGTGTCGGGCCGGCTGGGCGTCAGACAGACCCTCTGGGCTCTTGCGTTCCTGGTGTCCCTGGCTCTCTTTCTATACCAGGCGGCAAAGTGTGCCATCTCCTACCTGGAGCATCCTCATGTCACGGCACTGAATGAGGAGGCCACCCCGGAGATGGTGTTCCCCGCCGTGACCATCTGCAACATCAACCGTTTCCGCTTTTCCGCTCTTACTGACGCCGACATCTACCACCTGGCCAACCTGACCGGCTTGCCCCCAAAAAACAAGGATGGCCACAAGCCCACCGATTTGGAGTATCCGGCGCCGGACATGCAGGACATCTTCAACCGGACGGGTCACCAGCTGGAAGAGATGCTAAAGAGCTGCAACTTCAGTGGGCAGAACTGCTCGGCCGAAGATTTTACAGTGGTCTACACAAGATATGGGAAATGCTATACTTTCAATGGGAACAAAACAACCTCCAGGAAGACAAAGCAAGGAGGGATGGGAAACGGACTGGAGATCATGTTGGATATCCAGCAGGATGAATATCTACCTATCTGGAAAGAGACAAATGAAACATCTTTAGAGGCAGGAATCCGTGTTCAGATCCACAGTCAGGATGAGCCGCCCTACATCCATCAGCTGGGCTTTGGAGTCTCTCCGGGATTCCAGACCTTTGTTTCCTGTCAAGAGCAAAGGTTGACCTACCTGCCCCAGCCTTGGGGGAACTGCCGCTCCACCAGTGAGCAGATGATCCCAGGTTACGATACCTACAGTATCAGCGCCTGCCGCCTGCGCTGCGAGACTCTCGAGGTTCAGCGTGTGTGCAAATGCAGGATGGTGCACATGCCGGGAGATGCCGATATCTGTACTCCCAGCAATATCAAATGTGTGGACAAAGCACTTGCACTGCTACAGACAAGTTCAGGTGACACATGCTCGTGTGAAACTCCCTGTAACCTGACGCGTTATGGTAAAGAGCTGTCCATGGTTAAAATCCCCAGCAAAGGCTCGGCTCGCTATCTGTCTAGAAAATATGACAAGTCTGAAGACTACATCAGAGACAACTTCCttgttttggacattttttttgaagcgctaaattatgaaacaatagaacagaaaaaggcatATGACGTGGCTGGATTATTAGggGACATTGGCGGGCAGATGGGTCTTTTTATAGGAGCCAGTGTTCTCACCATCTTGGAGATTCTGGATTATGTATATGAGGTGATCAAACACAGGTTGGAGCGTTTGCTCGGGTCACAAAGAGATGACAAAAAGCAAACCCAGCAGCAGCAACAGGCCAGCACAGTGGCCACAGTAAAGCTGGAGGAAATGAAAGCTAAGGATTCTGGCGAGATGAGCCGGAGCCACTCGGAGGGAGCTTATGCTAACACCATCCTCCCAAATCACCATCACCACCACCGTACCCACCACCGAGTGTTCGAAGACTTTGCCTGCTAGGAAAACCCGTCTGGCGGGTCTAGTGCTGTTGACGTCTAGAGAAAGAGTTCTCTCATTGCTGAAGGTGGGCTCAATGAAAGACCCTCAAATCTCAGCGCTAATCTCTCTCGCTGTCACCAGTTAAAGCTACAGCCAAAGCCGAACTCTAAACCCTCGCTTCTAGGCATGGATCGGACATTGTGGTCCAGCAGGAGACTCTCTGAAATCCTGTCCTCCCCACTCCCAACCCCCCACCCGCCTCCTAttgcaggaagtgacatcagtgGCAACTCTACGATTTCTACACTGAATACCTTGATACTGGGCCTCTACTATATCAAGGCATAGACTGCATGACATCTAGAGCCACTTTATACTCCAGATCCTGTTTGAAGCATTACAttcttactttatattttgtcaGCTGTTAAGAGTTTTATTCGGTGAGTTCTCatcttgtgaaatattataattcagATTAATCtacaaatgtaaatgatgtaTTTGAATCATGATTGTCAACCCTTAGGCTCCAGAGCGTAAGAGAAATAACTTTACTCTGGTATACTCTTTCTCTGAAATTATGGGGACGGTGTAGAATAGTTTGTGTTGAAGAAAAGTAATATGTATCCATCTCTACTGGATATGTCTGGTAAGTGTTTCCTTTATCTCAAATGGTTTACGATTATGTTACCTTAAAGTATATTGAATAATCCAAAAAATTTTGTAAAGTTATTTATAGAGCTGTAACGTGTGAGTGGTAATGGGTGTCATTAGCAGTAACAACATAATCTTCTGTGAGGTTACTTCCCAACGGAGAGCCAAATGATGTGTACAGTAAAGCCCACCAGAGCCATTGTGGTAACCATATGGAAAAGGTTtgtttcatccatccatcagctGATGGATCCACTCTCCCAGACCTCCcaaaagtgtttaataaaacagaccTTATGTTCCTAGTTTCACTTTTGAATGAGACAGAGTGCAGCGGTCCCAGGAGAATGATAAACCGGTTTTACTCAGCACACTCGCAAAGTATGAGCAATCTGATGCACCGCAGCGTATGGCTTCACGTTTAAAAATCAGTCGATGAGTTTTTCTCAGGGTTCTTAGCTGTGAAATGCCTAGCGGTCTCTTTGACAAAAGGCCAGATGTGCAAAGCATTTCAATCAGAAAACATAGGCTTTTCTATGTGTGAAAAATTCAGCGAGTACTGACATTCAATGACAattcaaagatgaaaaacatttccatttcagCTACAGTCCTAATGGCGTAAATGCTGGTATCGAATTTGTGGTTTCAAATATGGCTGATATTACTGTAAGTCAACCGTGTAGCACccctaacttttttttttgttttttttggctttttggaAATGCATTACTTTGTAATCAGACATTTCAGGTGCAGTTCTTGTATAATTAATGTCTGATGATTTTATTAGCTTAATGGgtgttataatttattatgatgTGTGTAAGACTTCATTGTTTAAAGGttgtgttattaaaatgagcagaaatatatacaaataaatgatttatatagtaCTAAATCTTATATagcattgcacacacacacataaatatatatatattcatatatactgTGCTCAATTTTCTCGTGCGCATTTAGTACTCGTTTCcgtaacttttttcttttatttacctACATTCACAAACTACAGAATTATTTCAAAAGTTACACAGCTTTGTATCCTCTATAGTTTAGTTCCTCTCTGTTGGGTAGATTCTGTCTTAGCGTTTTCATATCTTCTGGAATGCATCTTATTTGTATGTCATATCAAAAACACGCTGCATATATTCCATCTATAAAAAGTAATCATGTCtaatatgtgcttttaatattcataaaactGTATCACAGTGGCATTTTAAAGTTTCCCAGGCAGAGTTTTGATGGCACACTGAGCCGGTTATgcataataatacagtttacTGTCATAAATTACTGTGCTGTCAGCAGTAAAAAAGCAGAATAGCTGACATACCAGTGCATGTCCAGGAATTGCACTGGAACAAATCACTCAGATTTGATTTGGCATTATCTGTCAACCTCATGCACTCATGCACAGTtgtacatttctgcatttgtggCCTATCTTACCTGTGCAGAAGGAATTGCTCCAAAAGTTGAAATGCAATTGGGTGTGCACGACTTGCCATTATTGTGGAAAGAGTTTTCTAGCAAATAGCAGTGATTCTGTGCAATCCAAAAGGCAGATCTGCATCAAAAGGGGGATATAGATGCTTCCAcgttaattaaacatttctccAAACTGAGGTCAGTGTTGCAGCATTGTCAAGCAATTAACATGGCTACCTTTTCCCACGTAGATTGTATTTACTCATGGTTTCTTACAAATTACATCACTTTCTTGAAATACTTCAGGTGGAAGATTATGAGGGAGAAATTGAAGAGAATGTAGGAAGAGGAAAGGGAAAAGAGAGAGCAATATCGAAGGCACAGCAGGAACAACCGAAAGCAACTTGTGGTTTGGGACAATGTCCAATTCCAGCATGTAGCGCTGGTGCGTGAGTGGATTAAAAATCACCCACATTTTGTTATAGTGTTTCTTCCAGCAACTTctctatttttaaattcagttataGAGTAATTCGTCTGGGGATGGAAAGAGTTTCGACCGCAACTTCTTACATCCAATGTAAACGGATTTAATATTTGcaccttttcttttcttggGTCCATAACTTGGAATGCGTTACCAGTGTTGAAGTATTTTAAATTCCAATTCAAGATCATtctggtctcatggcattaatgtaccttggtgcactttttagcgaggcatgaaatacgtaccaataagtgCATATCGTTGcaatttccaaaagaaatgaacactagaggcactaaaactctgacaccttgtATTCCTtgtcacacaaatttacagagttttgattaataaagcataatctTCATAGAATTACTTAAAGAATATGATGTGACGTAagattaatatgctgggatatttgaaaactgatgcttttgaacactAGCATCATCCATATCcggcttcatatctatgggttttcatagacttTCATAGGTCTGTTCGGTAGCTcatggagtacagagatgtacttgagaggccaggagctctggtttgaatcctgttagggttggatttggtgtagggcatatttccagcaTGATAAAGCtctaacttttagcaacagtccattGATATCTAAATTCTAAACCACCgcaatatatacttatatatcacactaataaaaaaatgacgttgcacaaaaagtgcacagaggtacatattgtTATGAGACCAGCATTCTTCTGTTGTGAATATTGTTCAGCCCTTGCCCGATGTTTGGATGGCTGCGTTAGTTGTTTTAAATACTGAGTTTATTTTGGAAGggggaaaagacagaaaaattgATCCAGAAAACGGTGATGTTCCGTCATCTGATATTGTTTCATCTTCAGATGTCAGTTCTATTCTGATCCAAATGGCGCAGTGTTGAGCtctatgtgtgtatttttaaaactgtgctACGCTGCTTTAACTTtgacatgctgtttttttccaccCGCTTTTGCCAGCCAGACCACCATTTAGCTCCTAGAGGGGGCCATAAAACGAGGCACTGAAGCAGCATATAGCGCAAACAGACTGTTGAGATTTCCACACGATTAAAGGCATCAAGACTAATCAGGCTAATTACCCATTACACTCCAGAACCTAATGGACTGTATACCAGACTACAGAGAACACATAATACAGTTTGCACAAAGGTCTGCTGTTATGACCGTGATTTCTGTTagaacacattttataaatgtaacaatgGCACGTACTGgagtccaaaaataaaatattgataaattcATCACTTCGGTTCTGGTCACTGAGATGCAAGCCCTCCACACCATGTGCTTTTTGATGGCTTATGATTCTACTGAGGATGCTGGACAACTTA

Function

symbol description
asic4a Enables ligand-gated sodium channel activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to act upstream of or within sodium ion transport. Is integral component of plasma membrane. Is expressed in gill; retinal ganglion cell layer; and retinal photoreceptor layer. Orthologous to human ASIC4 (acid sensing ion channel subunit family member 4).

NR:

description
acid-sensing ion channel 4 isoform X1

GO:

id name namespace
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0015280 ligand-gated sodium channel activity molecular_function

KEGG:

id description
K04831 ASIC4, ACCN4, BNAC4; acid-sensing ion channel 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249164.1 True 6363 mRNA 0.43 10 8978518 9048802

Neighbor

gene id symbol gene type direction distance location
wnt6b wnt6b,wnt6,LOC107562106,LOC107663826,LOC107560470,LOC107672249 coding downstream 17144 8942859 ~ 8961374 (-)
wnt10a wnt10a,LOC107663825,LOC107672309,LOC107562105,LOC107560469 coding downstream 44187 8919863 ~ 8934331 (-)
cdk5r2b LOC107562111,LOC107749900,LOC107672300,LOC107560468,LOC107752915,LOC107663905 coding downstream 99430 8876681 ~ 8879088 (-)
si:dkey-69o16.5 si:dkey-69o16.5,LOC107663837,LOC107749873,LOC108411906,LOC100708275 coding downstream 151469 8824663 ~ 8827049 (-)
tmem41aa tmem41aa,LOC107749879,LOC107596517,LOC107663880,LOC107668406,LOC107752878,LOC107593004,LOC105908658,LOC108410768 coding downstream 468232 8506932 ~ 8510286 (-)
gmppaa gmppaa,LOC107556449,LOC105902665,LOC106581839 coding upstream 101390 9150192 ~ 9155280 (-)
dars1 dars,LOC107676220,LOC107663896,LOC102778528,LOC107706104 coding upstream 111507 9160309 ~ 9184553 (-)
cxcr4b cxcr4b,LOC107749897,LOC107663919,LOC107706106,LOC107676218,LOC107568342,LOC107556439 coding upstream 137775 9186577 ~ 9188474 (-)
nxph2a nxph2a,LOC107751612,LOC107663841,LOC107556444,LOC107720323,LOC107658205,LOC107558041 coding upstream 562217 9611019 ~ 9626167 (-)
ttf2 ttf2,LOC107707769,LOC107663926,LOC107732352,LOC107658229,LOC105900813 coding upstream 609601 9658403 ~ 9669522 (-)
G68857 NA non-coding downstream 58772 8918541 ~ 8919746 (-)
G68844 NA non-coding downstream 154131 8822356 ~ 8824387 (-)
G68839 NA non-coding downstream 160900 8816520 ~ 8817618 (-)
G68830 NA non-coding downstream 173113 8802385 ~ 8805405 (-)
G68826 NA non-coding downstream 176769 8793861 ~ 8801749 (-)
G68948 NA non-coding upstream 189315 9238117 ~ 9238462 (-)
G68981 NA non-coding upstream 558502 9607304 ~ 9610739 (-)
G68987 ugt1a4,LOC107556441,LOC107663842,LOC107663839,LOC107558044,LOC107658227,LOC107720327,LOC107558046 non-coding upstream 583231 9632033 ~ 9652602 (-)
G68988 NA non-coding upstream 605314 9654116 ~ 9654567 (-)
G68994 NA non-coding upstream 623770 9672572 ~ 9672901 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other downstream 883671 8076468 ~ 8094847 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other downstream 953846 8014449 ~ 8024672 (-)
LOC122351350 cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538 other downstream 1824564 7070985 ~ 7153954 (-)
G68188 irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 other downstream 2717449 6246900 ~ 6261069 (-)
LOC122351979 NA other downstream 2878606 6099071 ~ 6099912 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other upstream 859386 9908188 ~ 9910178 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other upstream 1384705 10433507 ~ 10443619 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other upstream 1466470 10515272 ~ 10519457 (-)
mrasa LOC107551943,LOC107663912,LOC107733654,LOC107600440,LOC107738526 other upstream 1631356 10680158 ~ 10686627 (-)
LOC122351858 slc10a2,LOC107663831,LOC107567642,LOC107675341,LOC107738529 other upstream 2347864 11396666 ~ 11493120 (-)

Expression


Co-expression Network