chn1 (chn1,LOC107742958,LOC107739458,LOC105007244)


Basic Information

Item Value
gene id chn1
gene name chn1,LOC107742958,LOC107739458,LOC105007244
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4158860 ~ 4196267 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249173.1
GTGCTTTGGGATCCAATGGCCGTGACATCGTTTGGAGAAGGCATACTGAGACATGCATTttATAATGACGAGTACAGACCGCCCGTGTGGAAGTCCTACTTGTACCAGCTCCAGCAGGAGGCGCCGCATCCACGCAGAGTCACCTGCACATCTGAGGTGGAGAACCGGCCGAAGTACTATGGACGAGAGTATCATGGGATGATCTCCAGAGAGGAGGCAGACCAACTGCTCAGTGTGGCCGAGGGAAGTTACCTGATCCGAGAGAGCCAGAGACAGCCGGGCACATACACGTTAGCTCTACGctttGGGAATCAGACCCGCAACTTCCGTCTGTTTTACGATGGGAAGCATTTTGTGGGAGAGAAGCGCTTCGAGTCCATCCACGATCTGGTAACAGACGGCCTGATCACGCTCTACATCGAGACCAAAGCCGCCGAATACATATCTAAGATGACCATCAACCCCATCTACGAGCACGTGGGCTACACCACCCTGAACCGCGAGCCGGCGCTGAAGAAGGCCCTGCCCGTCTGCAGAGACCTGCCCGATGGGAAGGACTCGGCCGGAGAAGACACCGCTCTGGAGGAGAGGCTCACGTCGCTGGTCCGTCGAGCCACGCTGAAGGAGAGCGAGCGGGCGCCCAAGTACGAGAAAGTCCACAACTTCAAGGTGCACACCTTCAGAGGACCGCACTGGTGCGAGTACTGCGCCAACTTCATGTGGGGACTCATCGCTCAGGGAGTCAAATGTGCAGaCTGTGGGTTGAACGTTCATAAGCAGTGCTCTAAGATGGTGCCCAACGACTGCAAACCGGACCTGAAGCACGTGAAGAAGGTTTACAGCTGTGATCTCACCACGCTCGTCAAGGCTCATAACTCCAAACGACCCATGGTGGTGGACATGTGCATACGAGAGATCGAATCACGAGGTTTGAAGTCGGAGGGCCTCTATCGAATCTCTGGGTTCAGCGACTTAATTGAAGACGTGAAGTTATCGTTTGACAGAGATGGAGATAAAGCAGACATCTCCGTCAACGTCTATGAAGACATCAACGTCATCACAGGTGCTCTTAAACTCTACTTCAGGGACCTGCCGATCCCCGTCATCACGTATGACGCTTATCCACGCTTCATCGAGGCTGCCAagcTGACAGATCCAGACGAGCGCTTGGAAGCTCTGCATGAAGCTCTGAAGCAGATGCCTCCCGCTCACTGCGAAACCCTGCGACACCTGATGGCACACTTAAAGAGGGTAACTCAGAACGAGAAGGATAACCTGATGAACGCTGAGAATCTGGGGATCGTGTTCGGCCCGACCTTGATGCGAGCGCCGGATCTGGACGCCATGACCGCTCTGAACGACATCCGCTACCAGAGGCAGGTGGTGGAGTTACTCATCAAGAACGAGGACATCCTCTTCTAGCGGCGCGGCGCCGCTCTCTTCCGCCGGGACCCTCATATGAAGGACTCTTGTATTATAGCGCATTTTTTTGGACCAGTACGTACTAACGCTCCTCCCTGTTCCGATGGGTTCCGTTCCTGTTTCTTGCATGTCTTCCTCCCCATTTTTGTCGGGGGTCGCTGAAGCTGAGGTTGTACGACGTACCTCAGCATTATTATGGGATGGCATCGCTCAAAAGCGGTGGAGTCCGGCAGATCGGcttttctgggttttttttttttgtttgtttttgtaaaacacTGTGCATTTTGATATCGTACGTTTTTGGAGGCGCTTTACCTGAAGAGCCGTAAATAAAGATGCTGAGATTATGTAAATAATCTCTTCAAACGATATACAAACTCTTGTTCAGACAATCCTCGGCTGTCATTCGTACTTATTCATAGAGGTTGGCTATTGCTGTAATGTTAATCTTTGACACGTTTATGGCTCAGCGGGGAAAGTGCCGCCAGGgttttttcaaaaatctgtgatttgtttttatttttggttgtttttttactcCTTCGTCAGGTTGATCTGACTCTGTTCTGCCTTCACGTGCCGTCACTTCTGCTGTACTGTACTACAGGAAGAATATTTCCAGTCCATGTACATTTTCAGGATCCTTGACCTTAGCCTTTAGAAAACTTCTTACGCTCACATGACTTCTCGATGTTTTtcggttttgtgtttttgtatttgatttcagCATGAATacgttaatttattaaaatttacttTTA
>XM_043249174.1
ggatCAGGTCACGTGGTCTCACAAGATGGCGACTTCGGTGCTGGGATGTAAGGAGTGAAGCGGAGCTCCGGAGAAGCGCTCAGCACGGCCACCGGTACCGGATCGCCTCTAGTCCCTGCGCACGTGCGTCTCCCGCGCTGTCGGAGACGCTGCGAACGAAAGTTTAGCTCGGCGGCGGCTTGCAGCAACGCGGCCCCCCACCGAGCAATCCATCTAACCCTTCTCCTCCAGAATATAAGGCTGTTTGTCGCACAATCGGGCTCTCACCTCATGGAACGGATCTAAACGAGGCGTGTGTAGTTCAAAGCGTTGTGCGTCTGGATCATTGGCTGAGATGGCCATCCATGTGTTCGATAATGACGAGTACAGACCGCCCGTGTGGAAGTCCTACTTGTACCAGCTCCAGCAGGAGGCGCCGCATCCACGCAGAGTCACCTGCACATCTGAGGTGGAGAACCGGCCGAAGTACTATGGACGAGAGTATCATGGGATGATCTCCAGAGAGGAGGCAGACCAACTGCTCAGTGTGGCCGAGGGAAGTTACCTGATCCGAGAGAGCCAGAGACAGCCGGGCACATACACGTTAGCTCTACGctttGGGAATCAGACCCGCAACTTCCGTCTGTTTTACGATGGGAAGCATTTTGTGGGAGAGAAGCGCTTCGAGTCCATCCACGATCTGGTAACAGACGGCCTGATCACGCTCTACATCGAGACCAAAGCCGCCGAATACATATCTAAGATGACCATCAACCCCATCTACGAGCACGTGGGCTACACCACCCTGAACCGCGAGCCGGCGCTGAAGAAGGCCCTGCCCGTCTGCAGAGACCTGCCCGATGGGAAGGACTCGGCCGGAGAAGACACCGCTCTGGAGGAGAGGCTCACGTCGCTGGTCCGTCGAGCCACGCTGAAGGAGAGCGAGCGGGCGCCCAAGTACGAGAAAGTCCACAACTTCAAGGTGCACACCTTCAGAGGACCGCACTGGTGCGAGTACTGCGCCAACTTCATGTGGGGACTCATCGCTCAGGGAGTCAAATGTGCAGaCTGTGGGTTGAACGTTCATAAGCAGTGCTCTAAGATGGTGCCCAACGACTGCAAACCGGACCTGAAGCACGTGAAGAAGGTTTACAGCTGTGATCTCACCACGCTCGTCAAGGCTCATAACTCCAAACGACCCATGGTGGTGGACATGTGCATACGAGAGATCGAATCACGAGGTTTGAAGTCGGAGGGCCTCTATCGAATCTCTGGGTTCAGCGACTTAATTGAAGACGTGAAGTTATCGTTTGACAGAGATGGAGATAAAGCAGACATCTCCGTCAACGTCTATGAAGACATCAACGTCATCACAGGTGCTCTTAAACTCTACTTCAGGGACCTGCCGATCCCCGTCATCACGTATGACGCTTATCCACGCTTCATCGAGGCTGCCAagcTGACAGATCCAGACGAGCGCTTGGAAGCTCTGCATGAAGCTCTGAAGCAGATGCCTCCCGCTCACTGCGAAACCCTGCGACACCTGATGGCACACTTAAAGAGGGTAACTCAGAACGAGAAGGATAACCTGATGAACGCTGAGAATCTGGGGATCGTGTTCGGCCCGACCTTGATGCGAGCGCCGGATCTGGACGCCATGACCGCTCTGAACGACATCCGCTACCAGAGGCAGGTGGTGGAGTTACTCATCAAGAACGAGGACATCCTCTTCTAGCGGCGCGGCGCCGCTCTCTTCCGCCGGGACCCTCATATGAAGGACTCTTGTATTATAGCGCATTTTTTTGGACCAGTACGTACTAACGCTCCTCCCTGTTCCGATGGGTTCCGTTCCTGTTTCTTGCATGTCTTCCTCCCCATTTTTGTCGGGGGTCGCTGAAGCTGAGGTTGTACGACGTACCTCAGCATTATTATGGGATGGCATCGCTCAAAAGCGGTGGAGTCCGGCAGATCGGcttttctgggttttttttttttgtttgtttttgtaaaacacTGTGCATTTTGATATCGTACGTTTTTGGAGGCGCTTTACCTGAAGAGCCGTAAATAAAGATGCTGAGATTATGTAAATAATCTCTTCAAACGATATACAAACTCTTGTTCAGACAATCCTCGGCTGTCATTCGTACTTATTCATAGAGGTTGGCTATTGCTGTAATGTTAATCTTTGACACGTTTATGGCTCAGCGGGGAAAGTGCCGCCAGGgttttttcaaaaatctgtgatttgtttttatttttggttgtttttttactcCTTCGTCAGGTTGATCTGACTCTGTTCTGCCTTCACGTGCCGTCACTTCTGCTGTACTGTACTACAGGAAGAATATTTCCAGTCCATGTACATTTTCAGGATCCTTGACCTTAGCCTTTAGAAAACTTCTTACGCTCACATGACTTCTCGATGTTTTtcggttttgtgtttttgtatttgatttcagCATGAATacgttaatttattaaaatttacttTTA

Function

symbol description
chn1 Enables GTPase activator activity and phorbol ester receptor activity. Acts upstream of or within oculomotor nerve formation and positive regulation of GTPase activity. Is expressed in several structures, including central nervous system; digestive system; integument; pharyngeal arch; and testis. Human ortholog(s) of this gene implicated in Duane retraction syndrome. Orthologous to human CHN1 (chimerin 1).

NR:

description
PREDICTED: N-chimaerin

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0046872 metal ion binding molecular_function
GO:0001565 phorbol ester receptor activity molecular_function

KEGG:

id description
K20630 CHN1_2, ARHGAP2_3; chimaerin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249173.1 False 2186 mRNA 0.50 13 4158860 4196267
XM_043249174.1 True 2478 mRNA 0.51 13 4158860 4195589

Neighbor

gene id symbol gene type direction distance location
gpr155a gpr155,LOC107657393,LOC107600701,LOC107671327 coding downstream 18740 4127366 ~ 4140120 (-)
cir1 cir1,LOC102235890 coding downstream 38817 4074035 ~ 4120043 (-)
sp3a LOC107742953,LOC107718453,LOC107671312 coding downstream 120403 4029462 ~ 4038457 (-)
cln5 LOC107749021,LOC107664004,LOC107549926,LOC107670900,LOC107728242,LOC107549738 coding downstream 404196 3750722 ~ 3754664 (-)
scel scel,LOC107749035,LOC107670903,LOC107663996,LOC107713739 coding downstream 521272 3627501 ~ 3637588 (-)
atf2 atf2,LOC107671311,LOC107739459,LOC107657392,LOC107742976,LOC107600703 coding upstream 1650 4197917 ~ 4218494 (-)
atp5mc3a atp5g3a,atp5g3,LOC108424356,LOC107739460,LOC108266717 coding upstream 22629 4218896 ~ 4222267 (-)
lnpa lnpk,lnpa,LOC107742983,LOC107657390,LOC107725829,LOC107600748,LOC107671324,LOC107588227 coding upstream 155435 4351702 ~ 4361969 (-)
evx2 evx2,evx2a,LOC107657379,LOC107671304 coding upstream 170893 4367160 ~ 4371591 (-)
nfe2l2a nfe2l2a,LOC107716922,LOC107725823,LOC107671308,LOC107657385 coding upstream 360859 4557126 ~ 4571116 (-)
G67605 NA non-coding downstream 112147 4046486 ~ 4046713 (-)
LOC122351402 NA non-coding downstream 135466 3989592 ~ 4023394 (-)
G67597 zak,LOC107657350,LOC107718456,LOC107600726,LOC107671274,LOC107742952,LOC107588248 non-coding downstream 177670 3979275 ~ 3981190 (-)
G67581 NA non-coding downstream 211955 3945319 ~ 3946905 (-)
G67537 NA non-coding downstream 329217 3829018 ~ 3829643 (-)
G67710 NA non-coding upstream 227710 4423977 ~ 4424298 (-)
G67712 NA non-coding upstream 231021 4427288 ~ 4427646 (-)
G67733 NA non-coding upstream 354970 4551237 ~ 4551875 (-)
G67730 NA non-coding upstream 356157 4552424 ~ 4555750 (-)
G67747 NA non-coding upstream 439743 4636010 ~ 4636342 (-)
wipf1a LOC107657348,LOC107600727 other downstream 8621 4142290 ~ 4150239 (-)
G67668 NA other downstream 36757 4120463 ~ 4122103 (-)
dgkh dgkh,LOC107713732,LOC107549907 other downstream 651568 3437756 ~ 3507292 (-)
G67358 gpx4a other downstream 964368 3189847 ~ 3194492 (-)
serp2 NA other downstream 1113553 3017043 ~ 3045307 (-)
pde11a pde11a,LOC107657382,LOC107671328 other upstream 419575 4615842 ~ 4666654 (-)
LOC122351499 LOC107670334,LOC107747232 other upstream 596157 4792424 ~ 4822965 (-)
LOC122351456 LOC107747234,LOC107560802,LOC107670305,LOC107752600,LOC107689492,LOC107549748,LOC101883674 other upstream 660383 4856650 ~ 4973955 (-)
G67863 farp1,LOC107747234,LOC107670305,LOC107689492,LOC107752600,LOC107549748,LOC101883674 other upstream 763450 4959717 ~ 4983747 (-)
dbi dbi,LOC107560815,LOC107747240,LOC107752581 other upstream 814246 5010513 ~ 5014813 (-)

Expression


Co-expression Network