itgbl1 (itgbl1,LOC107748609,LOC107690616,LOC107731761,LOC107600373,LOC107569583)


Basic Information

Item Value
gene id itgbl1
gene name itgbl1,LOC107748609,LOC107690616,LOC107731761,LOC107600373,LOC107569583
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 15492358 ~ 15524739 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249188.1
CGAGCTGGATTTGGCCAGCCCGTTCTCCCTCTGTTTTGGAAAGTGGAAATTCCTGAAGGCACTTCACTTCAGGTTTCTGGTGGGGATCTAAACATGCATGCAGAGACTTTGGTGAACTCTGTCTTAGTTTCTTTGCTTCTAATTTTGCTCTCTGCCGTTCAAGGAAGTTTACAGCAGTCGCTAAGGCAGGTGGGTGGAGAGTGTAAGATCTCCTCTGAATCATCACTGAGGCGCTGTCGGACCCCCGACGGTTTGATCTGTAGTgggagaggtgtgtgtgagtgtgggaTTTGCATATGCCAGGTCACAGAACCCGGAACGTTCTATGGACCGCGTTGTGAGTGCCATGACTGGATCTGTCCGACATATGATGGCAAGACCTGTGGAGATCGTGGGATATGCAACTGTGGAAAGTGTTTCTGTGATGAAAACTGGTTTGGGGAATCCTGTCAGTATCAGGAGGAATGTTCACTATCCAGTAAAATCAGTAAAGACCTCTGCCGTAATGCCCAGGGTGTCGTTTGCTCCAATGCAGGCACCTGTCACTGCGGCAGCTGCATGTGCCACAATCCCGATGGGAAGGGTCTGATCAGCGGACGCTACTGCGAGTGTGACGACAGCGAGTGTTTGGAAGAAGACTCTGGAGAAGTGTGTGGAGGCCATGGAAAGTGTTACTGTGGAAACTGTTACTGCTCGGCTGGTTGGCATGGAGATAAATGTGAATTCCAGTGTGACATCAGCCCATGGGAGAGTAAGCGGAGATGCACATCTCCAGATGGCAAGATCTGCAGCAACAGAGGCACATGCGTATGTGGCGAATGCACTTGCTATGATGTGGATCCCTCAGGAGACTGGGGGGACATTCACGGAGAGACCTGCGAGTGTGACGAGAGAAGCTGCCATGCCATGTACGACAGATACTCGGATGATTTCTGTTCAGGTCAGGGCCAGTGTAACTGTGGCAGGTGCGACTGCAAGGAAGGTTGGGCTGGAAAGAAATGCGATCATCCTCTCTCCTGCTCGCTGTCAGTGGAAGCCAGTCAGAAGAAGTGCCGGGGAACCTCCAGCCTGCCCTGCTTTGGCAGAGGGCAGTGTTTGTGCGGCCAGTGCACATGCCACCCACCCGGAGATAAACGCGTACACGGCAAGAACTGTGAGTGTGACGACAGGCAGTGTGAGGACCTGAACAGAGAGATCTGTGGAgGCCACGGCTTCTGCTCGTGTGGCCGCTGTATCTGCGGTGATGGATGGTTTGGGAAGCACTGCCAGTTCCCCCGCAGCTGTGACATGACGGACGAGCAGAGCAAGAGCCTATGCGAGACGGCCGACGGCATCATATGCTCTGGAAAAGGCTCTTGTCACTGTGGTCGCTGTATCTGCTCACCACAGGAGTGGTACATTTCAGGGGAATTCTGCGAGTGCGACGACAGGGAGTGCGACAAACATGACGGGCTGGTTTGCACAGGGAACGGCGTGTGCAACTGCGGAAATTGTGACTGCTGGGATGGCTGGACAGGAAACGCCTGTGAAATCTGGGTTGGAGAGGAGTATTAACCCCTGGTAGACACACTTAAAGACTGTTTCTGTTGTCAATCAAGAAAAGAAAGTTGTGGCTGCGGCAACAGCGAACAACGGAAAATTGATTTTAGAGATCTGCGCAATATAATGGCATTCGCATTTTCTTAAAGCAATGTGGTGTAAATTCCATTATTTGCACATAAAACAGCTGTGGAAGATGACATTTATAATCCTCTATAGTTTTccatatagctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataatatatatatgaaaattgtGTATAATAATGCTTACATTGAATAACACTATTGACTATAAGGAGAGGATCCaagtaaaagtattttattactattcAGGTTGCTGTTTTTCAGAGCTCTGCTTATGTGCAATGATTTTATGAGCCTAGTTTGTGTACGGTAAGTTCCATGTGACAAAAGATGTAAACAGCCTGATTCCAATAAATTTACCATACTCTGAGA

Function

symbol description
itgbl1 Predicted to enable integrin binding activity. Predicted to be involved in several processes, including cell adhesion mediated by integrin; cell-matrix adhesion; and integrin-mediated signaling pathway. Predicted to be part of integrin complex. Predicted to be active in cell surface and focal adhesion. Orthologous to human ITGBL1 (integrin subunit beta like 1).

NR:

description
integrin beta-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249188.1 True 2059 mRNA 0.48 11 15492358 15524739

Neighbor

gene id symbol gene type direction distance location
zic2a zic2a,LOC107600377,LOC107681317,LOC107569553,LOC107694587 coding upstream 216517 15270034 ~ 15275841 (+)
clybl clybl,LOC107681316,LOC107748615,LOC107668910,LOC107600379 coding upstream 242199 15196163 ~ 15250159 (+)
dachd dach1,dachd,LOC107668899,LOC107681303 coding upstream 348239 15040984 ~ 15144119 (+)
klf12b klf12b,klf12,LOC107740907,LOC107681319,LOC107668887,LOC107600382,LOC107720110 coding upstream 493075 14957355 ~ 14999283 (+)
tbc1d4 LOC107600383,LOC107655530,LOC107741985,LOC107668890,LOC107720111 coding upstream 567289 14898784 ~ 14925069 (+)
cfap97d2 LOC107719799,LOC107681311,LOC107595894 coding downstream 110846 15635585 ~ 15637475 (+)
pikfyve pikfyve,LOC107731754,LOC107719798,LOC107595854 coding downstream 112819 15637558 ~ 15655957 (+)
coq10b LOC107690612,LOC107569649,LOC107731759,LOC107659895,LOC107719803,LOC107595850 coding downstream 168618 15693357 ~ 15699457 (+)
ankrd50l si:dkey-145p14.5,LOC107569776,LOC107731753,LOC107719812,LOC107595839,LOC107690486,LOC107690620 coding downstream 457710 15982449 ~ 15995751 (+)
cnga4 cnga4 coding downstream 500248 16024987 ~ 16030512 (+)
G70478 NA non-coding upstream 175684 15307487 ~ 15316674 (+)
LOC122351314 NA non-coding upstream 185968 15299852 ~ 15306390 (+)
G70477 zic5,LOC107569541,LOC107694589,LOC107748614,LOC107740913,LOC107681322,LOC107600378 non-coding upstream 224843 15241778 ~ 15267515 (+)
LOC122352062 NA non-coding upstream 468201 15011689 ~ 15024157 (+)
G70462 NA non-coding upstream 484846 15007274 ~ 15007512 (+)
LOC122351790 NA non-coding downstream 156264 15681003 ~ 15683022 (+)
G70603 LOC107690614,LOC107731751,LOC107719800,LOC107659892,LOC107595847 non-coding downstream 164459 15689198 ~ 15692187 (+)
G70715 zgc:112056,LOC107731744,LOC107570103,LOC107659887,LOC107595889,LOC107690602,LOC103039907,LOC108266095,LOC105908687 non-coding downstream 439081 15963820 ~ 15964664 (+)
G70700 LOC107595840 non-coding downstream 449742 15974481 ~ 16012154 (+)
LOC122352145 NA non-coding downstream 506135 16030874 ~ 16032168 (+)
si:ch211-168k14.2 si:ch211-168k14.2,LOC107681321,LOC107748618,LOC108441415,LOC105905900,LOC108266656,LOC107600399 other upstream 66997 15401127 ~ 15425361 (+)
LOC122351767 NA other upstream 902919 14587082 ~ 14589439 (+)
ccnt2a ccnt2a,LOC107658298,LOC107725237,LOC107723659,LOC107684218,LOC107555058,LOC107555362 other upstream 1807523 13676163 ~ 13684835 (+)
G69834 col6a3,LOC107685998,LOC107567775,LOC107670696 other upstream 2187767 13289693 ~ 13304591 (+)
G69755 NA other upstream 2506380 12984868 ~ 12985978 (+)
LOC122351678 hspe1,mob4,LOC107690609,LOC107595852,LOC107569672,LOC107731766,LOC106586370,LOC105016277,LOC100701317,LOC103156730,LOC101472107,LOC102310674,LOC102783361,LOC108238849,LOC107690608,LOC106582314,LOC105899369 other downstream 183462 15708201 ~ 15715901 (+)
plcl1 LOC107569711,LOC107731752,LOC107690606,LOC107719808,LOC107659890,LOC107595846 other downstream 209831 15734570 ~ 15789702 (+)
rabl3 rabl3,LOC107569739,LOC107690631,LOC107659889,LOC107595844,LOC107736356 other downstream 374688 15899427 ~ 15901720 (+)
G70814 NA other downstream 1203768 16728507 ~ 16731361 (+)
mpc2b mpc2,LOC107695492,LOC107673680 other downstream 1221154 16745893 ~ 16749701 (+)

Expression


Co-expression Network