sp3a (LOC107742953,LOC107718453,LOC107671312)


Basic Information

Item Value
gene id sp3a
gene name LOC107742953,LOC107718453,LOC107671312
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4029462 ~ 4038457 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249193.1
GGACTTCCGGTCGGTGACGCAGTTGGCGAAGTGGAAGCCCCGCCGTCAATcaaattaggaaaaaaaacaaactggaCTAAAGCGAGCGCAGGCACCGATTAAAATAACCATGCTCGGAGTGTAATTAAACGCAGATATCAGTCTTATTTAAAGAACTCACGTAATGACCGcgcCTGAAGGGCCAGTGAAAGCGGGAGTCATGGCGGACAGCAGCAGCGCTCAGGACGGCGGCGGCGCGGAGCAGGACGGACAGCCCTCGCCGCTCGCCCTGCTCGCCGCCACTTGCACCGGCCTCGGTTCGCCCGCCCCCGGAGCAGAGAACGGGGCAAACTCCAACAATAATGCTGCTTCTGGAGGGAACGCAGACCTCTCAGTGCAGTTAACAGGGTCGTCTGAAAGGTGGGAGGCAGTGAAGGACGACTCGGGTGTCCTGCATCTCCCTGGCACGGGTATCGTCACGTCCAACGGACAGTATGTTCTTCCTCTCCAGAGCCTCCAGGGTCTCCAGAACCAGCCCATCTTACTCACGTCAGGGACAGACGCGTCCGGCGGCGCAGTGCCTAACATCCAATACCAAGTCATCCCTCAGGTGCAGACGGCCGACGGGCAGCTGGGTTTCTCTGCCTCTGGCGTCGAGGGGGCCTCGATGGCGCAGGACGCCACTGGGCAGATCCACATCCTACCGGATGGCACCCAGACCATCAGCGTCACGGGCACAGACGTGCTCAGCAACAGTCAGAACCTCATGACCCAGTCTGGCCAAGTGCACCAGATCCCACAGGTGTCTCTGGGAAGCTCTGCCTTCAGCGCTCAGGGTCAGGTGGTCACGAATGTGCCTCTGGGTTTGCCTGGTAACATTACCTTTGTGCCCATAAACAGCGTGGATCTGGACTCTCTCGGGCTCTCGGGAGCCCAGCCGATCGCCACCGGCGTCACGGCTGACGGACAGCTGATTATGACCAATCAGAGCGTGGAGAGCTCTGAGGGCTCGGCCAAAGCAGGGGAACAGCAACAGACACTCAACTCTAGTGCAGCCGCAGACATGTTTGTGCCTACCACGTCCTCGCAGCAGCACACCAGCACGATAGACGGCACGGGCGTGTTGACGCAGTCTGCGGCGGGAGAGCAGGGTGACGGCTCGGGCTACCTCACTCAGGTgtctggagggcagcaggtgaTCCAGTTACAGCAGTTGCCCTTGCAGACCGCTGACGGTCAGGTGTCTGCTCAGGCCCAGCAGTCTCTACAAAACGTCCAGCTCATCAACCCAGGAACATTCCTCATCCAGGCCCAGACCGTCACTCCGTCAGGACAGATACAGTGGCAGACCTTCCAGGTCCAAGGAGTTCAGAACCTCCAGAACCTTCAGCTCCAGACGGCTCCAGCTCAGCAGATAACTCTGGCCCCGGTGCAGACGCTGTCTCTGGGTCAGGGCAGTACACCAGTCAGCCTGACCTCTGGACAGATGCCTACCCTGCAGTCGGTGACGGTGAACACCGTGGGCCAGGCAGGCATTCAGTTCCAGCAGTCTGAGGACACCGACAGCACTGGAGATATTCAGATTAAGGAGGAGCCTGATTCGGAGGAGTGGCCTCTGGACAGTAGCTCTACGCTGAATGCCAATGACCTCTCTCACCTTCGTGTTCGTTTAGTGGAGGAGGAGATGGAGGGGTTGAACCAGGAGGGCAAACGTCTGCGCAGAGTCGCATGCACCTGCCCCAACTGCAAAGAGGGAGGCGGGAGGGGATCTAACATGGGCAAGAAGAAACAGCACGTGTGCCATATAGCCGGCTGCGGGAAGGTATACGGGAAGACGTCTCACTTGAGAGCTCACCTGCGCTGGCACTCGGGAGAGAGACCCTTTGTCTGCACCTGGATGTTTTGTGGGAAGAGGTTCACGCGCAGTGATGAATTGCAGCGGCACAGGAGAACACACACCGGAGAGAAGAAGTTCGTGTGCTCCGAGTGTTCGAAACGGTTCATGCGCAGCGATCACCTGGCCAAGCACATAAAGACCCATCAGAACAAGAAGGGAGGGGGCGGAGCTGTGGTGGCCAGTGTGGGCGGAGCCGTGTCCTCAGACAGCATCATCACCACGGGCGGCACCACGCTCATCCTCACCAACATCCAGCCCAGCTCCATGCAGGGCCTGGCCACCGTCAACGCCACCGTCAACACGTCCGGCTCACAGGACCAGCTGGGCACCGCCGAGATCCCTCTGCAGTTAGTGTCGGTGTCCGCCGGGGACGCAGCCGAGTGACACGCCGCTGAACGCTCAGACTCTGCCTCTTCCTGTATGACATCACGTCCTTCGTCCCTTCATACGTTGATTCCAAGCCCACGCATTTACCTTGCTTTTATACCTTTGCATATTTACCCTCCTTTTcgtaaatatgtacatttacgtgaatgcatatacacacacacacacacacacatatacatatatatatatatatatacatatatatattttttacaaatatagaATTATTGGGGGTTTTGTTCGTCTTTTTATGGGGGAAGCATTATTTCTTGTTTTCACATACAACACTGAAATGccttatattgtattataagcTGTCGTGTACAAAGCTCGAGTTCTTCATGGGTGTCAAGCATCTGTTTCAGTGTGTACTTGTTGGAATGGGAATAATCGTGTCGTGTAAAGAGTGCAGCGACTGATGTTAAAGGAGCAGCTTAGCCAAAAGCGAAAACTCTCACATTACTTATTCCCTCCTCCAATCACGCCATTCCAGGCTTTCTTTCCACGCAACAACCCTTCCGTATCTCTCGAGCTCCAGAACGGGACAGAAACTAGCCGATCGGCCGTATAAGTTTGCATTTTATGTCACAGGCTCGGGTTGGGGGCCGGAAGTTAAGCTGAAGAACGTAGCGTCTCGGGTCTGAACTAGTTCTTGTGGAGCGGGGGAGTAACTAATGGCAGAATTTCCATTACTGTGTCTGAGCTGCTTCTCTTTTTAATTATAGGTCGTAAGTGATATTCGTGGTGTAAGTTCTCCGTGTAAGGAGGAAGATTTGGAGAGAAGCCTGCCATTGTGCTGTTGAGAGTCGTGAAGGTGTCCAATAGTGTCTTTACATGTCTCCGATTGCTCCTCGCGAAAAAGCATTTGATTTCTTTTACGTAGTTTTATGTTGTGTAGGTAAAACCCAGGGCCTGGCTGGGCGGGGGCGGGGGAGGGGTATGAAACAATCAtgtaattaaaagcattttatgtatCGTAATTCTCAAAACCTCTGCGACTTGATCAGATCTTTCAATATGAATTTGTCGCGAATGAAGTCTTTTTTGAGCAAAgtgatatttatatacattgtaACCTGGATTTGTGGCGTCCACAACTGCTTttctaaggaaaaaaaaaagaaaaaaactcccTTCggctttacttttttaaagtactgGACTGTAATCAACATCAAGAATCATTTGTATGAAATGAAGCGGTTTGTAGTTTGCCAAATTTGATAAACGCAGAGAAAAACTCTTGATTTCTGTCTGGTTTGCAGCATTTATGTGCAGACCTGCGCTGTGTGTTTCAGGACCAAACGAGCGGCTCCGAGTGTCCGGCGTCGGTCTAGCGGTGTGTGTTAGACGAGCGGAAGCGGTCACGTGACACGTAGGAGACGTTCCCGGTGGTCAGTATGTAGGTTTTGAAGTCCCTCTCGTAGCCGTGAGCGTGACGCCTCAAGGAGTTAGCTAATGAAGGTTTCGTAACGAGTTCTCGAGGTTTTATTTGAACACACTGCAGGTCATCAGGGAGGACGCACTCGTTTGCTGTCAGTCCATGTACAAGGATGGCTTTGTTTCCACGTGGTACTGTACAATTATTCTCCGCTGATCTCTTTTTATTCCTTCAGCTAATCATGATGTCTCTTTATCTACCGATTTTGAGTACCGTTgccaatttttttgtgtttgggGATTTTATACCTCCTGTAGCCAAGTTTGTAACGATCAGGAGTTTGATTGAAAAGGTCCAGCGGGGTTAATGGCAGATAATGAAACActattttgttttctgatttgATAAAGGGTGTTCTGTCACATTGATCcagaattgctttttttttttttcttcttctttttttttttttttttttttttttgtcttttcctaGTTTGTGAAGTCTcatttgattttgttcactatAAATAGCATCTTAACAtgtcacttttatatttttatttggtcatttttccAAGAAAGCTTCGGACTATTGTACAATGCCCACTTTTGAGGGCAGCTGTTTATTTCacactaaaatgactaaacataA
>XM_043249195.1
GGACTTCCGGTCGGTGACGCAGTTGGCGAAGTGGAAGCCCCGCCGTCAATcaaattaggaaaaaaaacaaactggaCTAAAGCGAGCGCAGGCACCGATTAAAATAACCATGCTCGGAGTGTAATTAAACGCAGATATCAGTCTTATTTAAAGAACTCACGTAATGACCGcgcCTGAAGGGCCAGTGAAAGCGGGAGTCATGGCGGACAGCAGCAGCGCTCAGGACGGCGGCGGCGCGGAGCAGGACGGACAGCCCTCGCCGCTCGCCCTGCTCGCCGCCACTTGCACCGGCCTCGGTTCGCCCGCCCCCGGAGCAGAGAACGGGGCAAACTCCAACAATAATGCTGCTTCTGGAGGGAACGCAGACCTCTCAGTGCAGTTAACAGGGTCGTCTGAAAGGTGGGAGGCAGTGAAGGACGACTCGGGTGTCCTGCATCTCCCTGGCACGGGTATCGTCACGTCCAACGGACAGTATGTTCTTCCTCTCCAGAGCCTCCAGGGTCTCCAGAACCAGCCCATCTTACTCACGTCAGGGACAGACGCGTCCGGCGGCGCAGTGCCTAACATCCAATACCAAGTCATCCCTCAGGTGCAGACGGCCGACGGGCAGCTGGGTTTCTCTGCCTCTGGCGTCGAGGGGGCCTCGATGGCGCAGGACGCCACTGGGCAGATCCACATCCTACCGGATGGCACCCAGACCATCAGCGTCACGGGCACAGACGTGCTCAGCAACAGTCAGAACCTCATGACCCAGTCTGGCCAAGTGCACCAGATCCCACAGGTGTCTCTGGGAAGCTCTGCCTTCAGCGCTCAGGGTCAGGTGGTCACGAATGTGCCTCTGGGTTTGCCTGGTAACATTACCTTTGTGCCCATAAACAGCGTGGATCTGGACTCTCTCGGGCTCTCGGGAGCCCAGCCGATCGCCACCGGCGTCACGGCTGACGGACAGCTGATTATGACCAATCAGAGCGTGGAGAGCTCTGAGGGCTCGGCCAAAGCAGGGGAACAGCAACAGACACTCAACTCTAGTGCAGCCGCAGACATGTTTGTGCCTACCACGTCCTCGCAGCAGCACACCAGCACGATAGACGGCACGGGCGTGTTGACGCAGTCTGCGGCGGGAGAGCAGGGTGACGGCTCGGGCTACCTCACTCAGGTgtctggagggcagcaggtgaTCCAGTTACAGCAGTTGCCCTTGCAGACCGCTGACGGTCAGGTGTCTGCTCAGGCCCAGCAGTCTCTACAAAACGTCCAGCTCATCAACCCAGGAACATTCCTCATCCAGGCCCAGACCGTCACTCCGTCAGGACAGATACAGTGGCAGACCTTCCAGGTCCAAGGAGTTCAGAACCTCCAGAACCTTCAGCTCCAGACGGCTCCAGCTCAGCAGATAACTCTGGCCCCGGTGCAGACGCTGTCTCTGGGTCAGGGCAGTACACCAGTCAGCCTGACCTCTGGACAGATGCCTACCCTGCAGTCGGTGACGGTGAACACCGTGGGCCAGGCAGGCATTCAGTTCCAGCAGTCTGAGGACACCGACAGCACTGGAGTGGAGGAGGAGATGGAGGGGTTGAACCAGGAGGGCAAACGTCTGCGCAGAGTCGCATGCACCTGCCCCAACTGCAAAGAGGGAGGCGGGAGGGGATCTAACATGGGCAAGAAGAAACAGCACGTGTGCCATATAGCCGGCTGCGGGAAGGTATACGGGAAGACGTCTCACTTGAGAGCTCACCTGCGCTGGCACTCGGGAGAGAGACCCTTTGTCTGCACCTGGATGTTTTGTGGGAAGAGGTTCACGCGCAGTGATGAATTGCAGCGGCACAGGAGAACACACACCGGAGAGAAGAAGTTCGTGTGCTCCGAGTGTTCGAAACGGTTCATGCGCAGCGATCACCTGGCCAAGCACATAAAGACCCATCAGAACAAGAAGGGAGGGGGCGGAGCTGTGGTGGCCAGTGTGGGCGGAGCCGTGTCCTCAGACAGCATCATCACCACGGGCGGCACCACGCTCATCCTCACCAACATCCAGCCCAGCTCCATGCAGGGCCTGGCCACCGTCAACGCCACCGTCAACACGTCCGGCTCACAGGACCAGCTGGGCACCGCCGAGATCCCTCTGCAGTTAGTGTCGGTGTCCGCCGGGGACGCAGCCGAGTGACACGCCGCTGAACGCTCAGACTCTGCCTCTTCCTGTATGACATCACGTCCTTCGTCCCTTCATACGTTGATTCCAAGCCCACGCATTTACCTTGCTTTTATACCTTTGCATATTTACCCTCCTTTTcgtaaatatgtacatttacgtgaatgcatatacacacacacacacacacacatatacatatatatatatatatatacatatatatattttttacaaatatagaATTATTGGGGGTTTTGTTCGTCTTTTTATGGGGGAAGCATTATTTCTTGTTTTCACATACAACACTGAAATGccttatattgtattataagcTGTCGTGTACAAAGCTCGAGTTCTTCATGGGTGTCAAGCATCTGTTTCAGTGTGTACTTGTTGGAATGGGAATAATCGTGTCGTGTAAAGAGTGCAGCGACTGATGTTAAAGGAGCAGCTTAGCCAAAAGCGAAAACTCTCACATTACTTATTCCCTCCTCCAATCACGCCATTCCAGGCTTTCTTTCCACGCAACAACCCTTCCGTATCTCTCGAGCTCCAGAACGGGACAGAAACTAGCCGATCGGCCGTATAAGTTTGCATTTTATGTCACAGGCTCGGGTTGGGGGCCGGAAGTTAAGCTGAAGAACGTAGCGTCTCGGGTCTGAACTAGTTCTTGTGGAGCGGGGGAGTAACTAATGGCAGAATTTCCATTACTGTGTCTGAGCTGCTTCTCTTTTTAATTATAGGTCGTAAGTGATATTCGTGGTGTAAGTTCTCCGTGTAAGGAGGAAGATTTGGAGAGAAGCCTGCCATTGTGCTGTTGAGAGTCGTGAAGGTGTCCAATAGTGTCTTTACATGTCTCCGATTGCTCCTCGCGAAAAAGCATTTGATTTCTTTTACGTAGTTTTATGTTGTGTAGGTAAAACCCAGGGCCTGGCTGGGCGGGGGCGGGGGAGGGGTATGAAACAATCAtgtaattaaaagcattttatgtatCGTAATTCTCAAAACCTCTGCGACTTGATCAGATCTTTCAATATGAATTTGTCGCGAATGAAGTCTTTTTTGAGCAAAgtgatatttatatacattgtaACCTGGATTTGTGGCGTCCACAACTGCTTttctaaggaaaaaaaaaagaaaaaaactcccTTCggctttacttttttaaagtactgGACTGTAATCAACATCAAGAATCATTTGTATGAAATGAAGCGGTTTGTAGTTTGCCAAATTTGATAAACGCAGAGAAAAACTCTTGATTTCTGTCTGGTTTGCAGCATTTATGTGCAGACCTGCGCTGTGTGTTTCAGGACCAAACGAGCGGCTCCGAGTGTCCGGCGTCGGTCTAGCGGTGTGTGTTAGACGAGCGGAAGCGGTCACGTGACACGTAGGAGACGTTCCCGGTGGTCAGTATGTAGGTTTTGAAGTCCCTCTCGTAGCCGTGAGCGTGACGCCTCAAGGAGTTAGCTAATGAAGGTTTCGTAACGAGTTCTCGAGGTTTTATTTGAACACACTGCAGGTCATCAGGGAGGACGCACTCGTTTGCTGTCAGTCCATGTACAAGGATGGCTTTGTTTCCACGTGGTACTGTACAATTATTCTCCGCTGATCTCTTTTTATTCCTTCAGCTAATCATGATGTCTCTTTATCTACCGATTTTGAGTACCGTTgccaatttttttgtgtttgggGATTTTATACCTCCTGTAGCCAAGTTTGTAACGATCAGGAGTTTGATTGAAAAGGTCCAGCGGGGTTAATGGCAGATAATGAAACActattttgttttctgatttgATAAAGGGTGTTCTGTCACATTGATCcagaattgctttttttttttttcttcttctttttttttttttttttttttttttgtcttttcctaGTTTGTGAAGTCTcatttgattttgttcactatAAATAGCATCTTAACAtgtcacttttatatttttatttggtcatttttccAAGAAAGCTTCGGACTATTGTACAATGCCCACTTTTGAGGGCAGCTGTTTATTTCacactaaaatgactaaacataA

Function

NR:

description
transcription factor Sp3-like isoform X5

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09193 SP3; transcription factor Sp3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249193.1 True 4302 mRNA 0.51 8 4029462 4038457
XM_043249195.1 False 4203 mRNA 0.51 8 4029462 4038457

Neighbor

gene id symbol gene type direction distance location
cln5 LOC107749021,LOC107664004,LOC107549926,LOC107670900,LOC107728242,LOC107549738 coding downstream 274798 3750722 ~ 3754664 (-)
scel scel,LOC107749035,LOC107670903,LOC107663996,LOC107713739 coding downstream 391874 3627501 ~ 3637588 (-)
slain1a LOC107663999,LOC107549929,LOC107670892,LOC107549760,LOC107713716,LOC107749036 coding downstream 403648 3616257 ~ 3625814 (-)
wu:fc50b12 LOC107549762,LOC108232414 coding downstream 413263 3614518 ~ 3616199 (-)
kbtbd7 kbtbd7,LOC107549928,LOC107713735,LOC107664000,LOC107549759,LOC107670891 coding downstream 415418 3610456 ~ 3614044 (-)
cir1 cir1,LOC102235890 coding upstream 35578 4074035 ~ 4120043 (-)
gpr155a gpr155,LOC107657393,LOC107600701,LOC107671327 coding upstream 88909 4127366 ~ 4140120 (-)
chn1 chn1,LOC107742958,LOC107739458,LOC105007244 coding upstream 120403 4158860 ~ 4196267 (-)
atf2 atf2,LOC107671311,LOC107739459,LOC107657392,LOC107742976,LOC107600703 coding upstream 159460 4197917 ~ 4218494 (-)
atp5mc3a atp5g3a,atp5g3,LOC108424356,LOC107739460,LOC108266717 coding upstream 180439 4218896 ~ 4222267 (-)
LOC122351402 NA non-coding downstream 6068 3989592 ~ 4023394 (-)
G67597 zak,LOC107657350,LOC107718456,LOC107600726,LOC107671274,LOC107742952,LOC107588248 non-coding downstream 48272 3979275 ~ 3981190 (-)
G67581 NA non-coding downstream 82557 3945319 ~ 3946905 (-)
G67537 NA non-coding downstream 199819 3829018 ~ 3829643 (-)
G67491 NA non-coding downstream 286729 3672527 ~ 3742733 (-)
G67605 NA non-coding upstream 8029 4046486 ~ 4046713 (-)
G67665 NA non-coding upstream 86273 4124730 ~ 4216883 (-)
G67710 NA non-coding upstream 385520 4423977 ~ 4424298 (-)
G67712 NA non-coding upstream 388831 4427288 ~ 4427646 (-)
G67733 NA non-coding upstream 512780 4551237 ~ 4551875 (-)
dgkh dgkh,LOC107713732,LOC107549907 other downstream 522170 3437756 ~ 3507292 (-)
G67358 gpx4a other downstream 834970 3189847 ~ 3194492 (-)
serp2 NA other downstream 984155 3017043 ~ 3045307 (-)
LOC122352064 galnt13,galnt1,LOC107671291,LOC107566748,LOC106586166,LOC107657719,LOC107687813,LOC107723435,LOC107706221,LOC107593713 other downstream 1190508 2807924 ~ 2838954 (-)
LOC122352168 galnt13,LOC107657405,LOC107566748,LOC107671291,LOC107559530,LOC107745272 other downstream 1230868 2763420 ~ 2798594 (-)
G67668 NA other upstream 82006 4120463 ~ 4122103 (-)
wipf1a LOC107657348,LOC107600727 other upstream 103833 4142290 ~ 4150239 (-)
pde11a pde11a,LOC107657382,LOC107671328 other upstream 577385 4615842 ~ 4666654 (-)
LOC122351499 LOC107670334,LOC107747232 other upstream 753967 4792424 ~ 4822965 (-)
LOC122351456 LOC107747234,LOC107560802,LOC107670305,LOC107752600,LOC107689492,LOC107549748,LOC101883674 other upstream 818193 4856650 ~ 4973955 (-)

Expression


Co-expression Network