LOC122351849 (bcs1l,LOC107741911,LOC107555925,LOC107673730,LOC107714219)


Basic Information

Item Value
gene id LOC122351849
gene name bcs1l,LOC107741911,LOC107555925,LOC107673730,LOC107714219
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18649212 ~ 18652922 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249207.1
CATCTCACCTAAAAGAACCATTTGTTCAATCATCACTGAGAGACTACGCTGGGTTAATGTAGAAAAGGTCTGCTTTATTACATCTTATTCGCGTATTTTTCGTATATTGTAAGTAATTATAGAGATTGTAAAATGCGGTGTGGTATTTGCTCAGCTGTAAGTATAGAGAGTTTTTAAATTtgcagttatttaaataaaaagatagacCTGATCAGTGACAGCTTCCCATAATGTCTTACCAATGGTcttatcaaaattaaaatgaaaatggtttcAGCTCCTCTGCTGTGAATGTAGGCTGCATACTGCAaatgaagggggaaaaaagcttttattgaCTGAATAAGAGAATCTGAGGACACTTCAACATGACCCTGTCAGATTTTCTGGGAGCCCTAAAGGACAACCCTTACTTTGGGGCAGGATTTGGATTAGTTGGTGTTGGCACAGCACTTGCAGTTGCCAGAAAAGGTGCACAGGTCGGCATGATCTTCTTCAGAAGACATTACATGATCACGCTGGAGGTCCCAAGCAGAGATAAAAGTTACCACTGGCTCTTAAGCTGGATCACTAAACATGCCAAACACACCCAGCATCTGAGTGTAGAGACCTCGTACATGCAGCATGAGAGTGGACGAGTCCATACACAGTTCGACTTCCATCCGAGTCCAGGGAACCACATCATTTGGTATGGCAGGAAGTGGATCAGAGTGGAGAGGACCAGAGAGAAGCAGATGGTGGACTTGCACACTGGAACGCCCTGGGAGTCCGTCACCTTCACTGCTCTGGGCAGAGACCGGCAGTTATTCTTCAACATACTTCAAGAAGCACGTGAACTTGCTTTAAAGCAGGAAGAGGGCCGTACTGTGATGTACACCGCACTCGGAGCAGAGTGGAGGCCGTTCGGGTTTCCTAGGCGAAGACGACCTCTGTCTTCAGTAGTGTTGGAGAATGGTGTGGCGGAGAGGATAGTGGATGATGTGAAGGAGTTCATTGGCAATCCTAAGTGGTACACTGACAGAGGCATTCCATATAGGAGAGGATATCTGCTGTATGGACCCCCGGGCTGTGGAAAAAGCAGCTTCATAACTGCATTAGCAGGCGAGCTGGGATACAGCATCTGCCTGATGAGTCTCAGCGACCGCAGCCTGTCTGACGATCGCCTCAACCACCTGCTGAGCGTGGCTCCACAGCAAAGCATCATCCTGCTCGAGGATGTGGATGCAGCCTTCGTCAGCCGAGAGCTGCTGCCTACGGAGAATCCACTGGCCTATCAGGGCATGGGTAGACTTACTTTCAGTGGACTTCTGAATGCTCTGGATGGAGTGGCATCTTCAGAGGCCCGAATTGTGTTCATGACAACTAATTTCATTGAGAGACTTGATGCGGCACTTGTCCGCCCTGGCCGTGTTGATATGAAGCAGTATGTGGGCTGCTGCTCTCACTGGCAGCTGACTCAGATGTTCCGGAGGTTTTACCCTCAGGAGTCCGCAGCTGAGGCAGAGCGGTTTGCAGAGCAAGCGCTGGTAGCACACACAGAGCTCAGCGCCGCTCAGGTGCAAGGACACTTCATGCTCTACAAGACAGACCCTGCTGGCTccatcaaaaacatttcagagaTGAAGGTGTGAATACTATACAGACAGTACAGACTTTTGTATAATGCAGACTGACCCAGCGGGCGAGTTATAAACAGaattaatgaatcattctttGAAATTTACACCTGGATGAAGGGTCTTCACACACTGgagtaataaaatctaaaataattgtgaaaattTGTCTATTTCTTCaattgttgctgttattggtTAAGCAACAACAGATGCACTGTTTATTACACATCGTCTTTTCTGTGATTTACAGGAATGTGTTTCTCTTGCAGATGACCAGTAAATTATTGTCTTCCTGAGA
>XM_043249208.1
CTGAATCATCGAAAAGGTTCATCTCACCTAAAAGAACCATTTGTTCAATCATCACTGAGAGACTACGCTGGGTTAATGTAGAAAAGCTCCTCTGCTGTGAATGTAGGCTGCATACTGCAaatgaagggggaaaaaagcttttattgaCTGAATAAGAGAATCTGAGGACACTTCAACATGACCCTGTCAGATTTTCTGGGAGCCCTAAAGGACAACCCTTACTTTGGGGCAGGATTTGGATTAGTTGGTGTTGGCACAGCACTTGCAGTTGCCAGAAAAGGTGCACAGGTCGGCATGATCTTCTTCAGAAGACATTACATGATCACGCTGGAGGTCCCAAGCAGAGATAAAAGTTACCACTGGCTCTTAAGCTGGATCACTAAACATGCCAAACACACCCAGCATCTGAGTGTAGAGACCTCGTACATGCAGCATGAGAGTGGACGAGTCCATACACAGTTCGACTTCCATCCGAGTCCAGGGAACCACATCATTTGGTATGGCAGGAAGTGGATCAGAGTGGAGAGGACCAGAGAGAAGCAGATGGTGGACTTGCACACTGGAACGCCCTGGGAGTCCGTCACCTTCACTGCTCTGGGCAGAGACCGGCAGTTATTCTTCAACATACTTCAAGAAGCACGTGAACTTGCTTTAAAGCAGGAAGAGGGCCGTACTGTGATGTACACCGCACTCGGAGCAGAGTGGAGGCCGTTCGGGTTTCCTAGGCGAAGACGACCTCTGTCTTCAGTAGTGTTGGAGAATGGTGTGGCGGAGAGGATAGTGGATGATGTGAAGGAGTTCATTGGCAATCCTAAGTGGTACACTGACAGAGGCATTCCATATAGGAGAGGATATCTGCTGTATGGACCCCCGGGCTGTGGAAAAAGCAGCTTCATAACTGCATTAGCAGGCGAGCTGGGATACAGCATCTGCCTGATGAGTCTCAGCGACCGCAGCCTGTCTGACGATCGCCTCAACCACCTGCTGAGCGTGGCTCCACAGCAAAGCATCATCCTGCTCGAGGATGTGGATGCAGCCTTCGTCAGCCGAGAGCTGCTGCCTACGGAGAATCCACTGGCCTATCAGGGCATGGGTAGACTTACTTTCAGTGGACTTCTGAATGCTCTGGATGGAGTGGCATCTTCAGAGGCCCGAATTGTGTTCATGACAACTAATTTCATTGAGAGACTTGATGCGGCACTTGTCCGCCCTGGCCGTGTTGATATGAAGCAGTATGTGGGCTGCTGCTCTCACTGGCAGCTGACTCAGATGTTCCGGAGGTTTTACCCTCAGGAGTCCGCAGCTGAGGCAGAGCGGTTTGCAGAGCAAGCGCTGGTAGCACACACAGAGCTCAGCGCCGCTCAGGTGCAAGGACACTTCATGCTCTACAAGACAGACCCTGCTGGCTccatcaaaaacatttcagagaTGAAGGTGTGAATACTATACAGACAGTACAGACTTTTGTATAATGCAGACTGACCCAGCGGGCGAGTTATAAACAGaattaatgaatcattctttGAAATTTACACCTGGATGAAGGGTCTTCACACACTGgagtaataaaatctaaaataattgtgaaaattTGTCTATTTCTTCaattgttgctgttattggtTAAGCAACAACAGATGCACTGTTTATTACACATCGTCTTTTCTGTGATTTACAGGAATGTGTTTCTCTTGCAGATGACCAGTAAATTATTGTCTTCCTGAGA

Function

symbol description
bcs1l Predicted to enable ATP binding activity. Predicted to be involved in mitochondrial respiratory chain complex III assembly and protein insertion into mitochondrial inner membrane from matrix. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in Bjornstad syndrome; GRACILE syndrome; and mitochondrial complex III deficiency nuclear type 1. Orthologous to human BCS1L (BCS1 homolog, ubiquinol-cytochrome c reductase complex chaperone).

NR:

description
PREDICTED: mitochondrial chaperone BCS1

GO:

id name namespace
GO:0034551 mitochondrial respiratory chain complex III assembly biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K08900 BCS1; mitochondrial chaperone BCS1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249207.1 True 1917 mRNA 0.46 7 18649231 18652922
XM_043249208.1 False 1726 mRNA 0.48 8 18649212 18652922

Neighbor

gene id symbol gene type direction distance location
ddx18 ddx18,LOC107673737,LOC107741906,LOC107660632,LOC107596072,LOC107714379 coding upstream 22798 18620886 ~ 18626414 (+)
nifk nifk,LOC107741903,LOC107660635,LOC107555919,LOC107714465,LOC107580417 coding upstream 99823 18546236 ~ 18549389 (+)
LOC122352188 NA coding upstream 100605 18548481 ~ 18548607 (+)
LOC122352186 NA coding upstream 101930 18547160 ~ 18547282 (+)
cacnb4a cacnb4,cacnb4a,LOC107660636,LOC107741900,LOC108434427 coding upstream 112161 18518212 ~ 18537051 (+)
LOC122351848 cyp27a7,LOC107741910,LOC107660625,LOC107714212,LOC107660626,LOC107555927 coding downstream 149 18653071 ~ 18657710 (+)
LOC122351850 LOC107555927,LOC107660626,LOC107741910,LOC107714212,LOC107660625,LOC107596087 coding downstream 6843 18659765 ~ 18662870 (+)
LOC122351791 LOC107555929,LOC107660624,LOC107741913,LOC107714185,LOC107673745,LOC107596074 coding downstream 10429 18663351 ~ 18674738 (+)
lss lss,LOC107714200,LOC107673746,LOC107660663 coding downstream 22229 18675151 ~ 18682202 (+)
osbpl11 LOC107741915,LOC107555931,LOC107660623,LOC107596076,LOC107714164 coding downstream 39653 18692575 ~ 18708193 (+)
G71334 NA non-coding upstream 105214 18543774 ~ 18543998 (+)
G71333 NA non-coding upstream 107876 18540883 ~ 18541336 (+)
G71331 NA non-coding upstream 110512 18538480 ~ 18538700 (+)
G71221 NA non-coding upstream 618664 18028361 ~ 18030548 (+)
G71167 NA non-coding upstream 1006774 17641910 ~ 17642438 (+)
G71442 LOC103022703,LOC103363874,LOC107673729,LOC107721018,LOC107596080,LOC107660614,LOC107555938 non-coding downstream 94989 18747911 ~ 18892052 (+)
LOC122351431 NA non-coding downstream 237001 18889923 ~ 18893969 (+)
G71457 LOC107662043,LOC107555909,LOC107741926,LOC107556197,LOC107660610,LOC107721020 non-coding downstream 327391 18980313 ~ 18985811 (+)
G71509 NA non-coding downstream 597917 19250839 ~ 19251157 (+)
G71517 NA non-coding downstream 603108 19256030 ~ 19256233 (+)
plcd4b plcd4b,LOC107741909,LOC107673750,LOC107714237,LOC107660629,LOC107596071 other upstream 6726 18635106 ~ 18642486 (+)
tfcp2l1 tfcp2l1,LOC107673739,LOC107714264,LOC107596086 other upstream 29825 18611995 ~ 18619387 (+)
clasp1a clasp1a,LOC107741904,LOC107555920,LOC107660633,LOC107673735,LOC107714287 other upstream 38284 18549936 ~ 18610928 (+)
lrp1bb lrp1b,LOC107661145,LOC107660661,LOC107746259,LOC107714450 other upstream 684968 17736006 ~ 17964244 (+)
G71130 NA other upstream 1309590 17339127 ~ 17339622 (+)
lmln lmln,LOC107741941,LOC107555912,LOC107673747,LOC107596075,LOC107714369,LOC107660656 other downstream 29750 18682672 ~ 18689542 (+)
cps1 cps1,LOC107660611,LOC107741925 other downstream 243680 18896602 ~ 18931462 (+)
vwc2l vwc2l,LOC107660607,LOC107657506,LOC107714362,LOC106586444 other downstream 859932 19512854 ~ 19543677 (+)
G71585 NA other downstream 968362 19621284 ~ 19621493 (+)
ormdl1 ormdl1,LOC107602148 other downstream 1056442 19709364 ~ 19714404 (+)

Expression


Co-expression Network