LOC122351850 (LOC107555927,LOC107660626,LOC107741910,LOC107714212,LOC107660625,LOC107596087)


Basic Information

Item Value
gene id LOC122351850
gene name LOC107555927,LOC107660626,LOC107741910,LOC107714212,LOC107660625,LOC107596087
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18659765 ~ 18662870 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249209.1
CTCCCTGCTTCCACAATGGCTGTTCGTCTTGCAGTGAGTTCTGCAGAAAGAAGGATCAGATTCGGTTTTCTGAGGCCTGTGACAGTGGCCACAAACATCAGGAGAGGGGCAGTAGGTAATGCTGCTGCTTCTGTCACTGTCCAGGACAGCCACGAGAAGCTTAAGACTGTAGCTGACCTCCCAGAGATCAAAACCTTTTGGATGCTCTACACAATGATTATTAAAAGGTGCATGAATCGCATACATGAGATGCAGATATACTCAAGCAAGGATTATGGCCCTTTGTTCAGAGTGAATGCTGGAAACCTCCAATCCATTTGCATAAACAGTGTGGACTTACTGGAGGAACTCCTTAGAAAAGATGAGAAGTTTCCTTCCAGAGGACACATGAATCTGTGGAGAGAGCACCGTGACATGAGAGGCATCAGCTACGGCCCTTTCACAGAagaaggagagaaatggTACAAACTGCGGAGAGTGCTGAACAAACGCATGCTGCACCCAAAGGACTCTGTTCAGTATGGAGATGTGGTCAATGCAGTGGTCACAGACTTCATCGAACGCATTCATTCTCTGCGGGAGATGAGCCCCACTGGTGATCTGGTCTCCAACTTGACCAGTGAGCTTTATCGTTTTTCCCTTGAAGGTATCTCATCCATTCTGTTTGAGACACGCATTGGCTGCCTGGAAAAAGAAATTCCGGCTGAGACGCAAGATTTTATTAACTCAATTGCACAAATGTTCACCTACAACGTCCACGTTGTGTTCCTGCCAAACTGGACTCGAAATTACTTGCCATTTTGGCAGTGGTACATTGATGGTTGGGATGGCATATTCAAATTTGCCAGAAAAATGATTGACATGAAGATGGAGGCCATACAGAAGCGTGTGGATGCAAATCAGGAGGTTGCTGGGGAGTATCTCACTTACCTGCTTTCCAATGTCAAGATGAGCAGTAAAGATGTGTATGGAAGTATTTCTGAGCTGCTGATGGCTGGAGTGGACACAACCTCCAACACTGTGCTGTGGGCGCTGTATCTTCTCTCAAGAGATCCAGAAGCTCAAGAGGCTCTGTATCAGGACGTAACCAGAGTCTTAAATGGTGACAAAATCCCAACAGCGCAGGAAGTGAACAGCATGCCTTACCTCAAAGCCGTCGTCAAGGAAACATTAAGGATGTACCCCGTGGTGCCCATGAATTCTCGTGTTATTTCAGAAAATGATGTTGTCATTGGAGGATACTTTTTCCCTAAAGAGacatCATTCGGTTTGTGCCACTTTGCAATGAGCCATGATGAGAAAGTCTTCCCAGAGCCACGAAAGTTCAAACCTGACCGCTGGCTCAGAGATGGCAGAACAAGACCCAACCCATTTGGATCACTTCCGTTTGGCTTTGGAGTCAGAGGCTGTGTTGGACGCCGCATTGCTGAACTGGAGATATATCTGCTTTTGGCAAGGttaatcCAGTTGTTTGAAGTCCGACCGGACCCAGCTGTAGGTGAGGTTAGGTCACTCAGTCGCTCAGTGCTTGTGCCAGACAGACAGGTGAACCTTCACTTTGTGGAGAGACAGAAGACATCTTCTGAACCATAGCTGAAGAATACCACCATTTTAGCAAGATATAAGCTATCTGTGTACATATATGAAAATGATCAGCTGGTGTGATTCATGTGAATATGCCAACTATTTTCCCTATGTGGATATAATTTTTTGTGCTTAGGAATATGTAATTTAAAGGACACTgtataacaatgtaaaaaaaactactttttttctgagccaattttgtataatttttttgccaGTAAAAATTGTTGTTGTGAATTGTATTTCATATTGCtgatatatgtattatatgaaCTTAAAGATCTAATAAACCTTTCAGTGAAT

Function

NR:

description
PREDICTED: sterol 26-hydroxylase, mitochondrial-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K00488 CYP27A1; cholestanetriol 26-monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249209.1 True 1890 mRNA 0.44 9 18659765 18662870

Neighbor

gene id symbol gene type direction distance location
LOC122351848 cyp27a7,LOC107741910,LOC107660625,LOC107714212,LOC107660626,LOC107555927 coding upstream 2055 18653071 ~ 18657710 (+)
LOC122351849 bcs1l,LOC107741911,LOC107555925,LOC107673730,LOC107714219 coding upstream 6843 18649212 ~ 18652922 (+)
ddx18 ddx18,LOC107673737,LOC107741906,LOC107660632,LOC107596072,LOC107714379 coding upstream 33351 18620886 ~ 18626414 (+)
nifk nifk,LOC107741903,LOC107660635,LOC107555919,LOC107714465,LOC107580417 coding upstream 110376 18546236 ~ 18549389 (+)
LOC122351791 LOC107555929,LOC107660624,LOC107741913,LOC107714185,LOC107673745,LOC107596074 coding downstream 481 18663351 ~ 18674738 (+)
lss lss,LOC107714200,LOC107673746,LOC107660663 coding downstream 12281 18675151 ~ 18682202 (+)
osbpl11 LOC107741915,LOC107555931,LOC107660623,LOC107596076,LOC107714164 coding downstream 29705 18692575 ~ 18708193 (+)
snx4 snx4,LOC107660619,LOC107741918,LOC107555933,LOC107714137,LOC107673751 coding downstream 58303 18721173 ~ 18733013 (+)
znf148 znf148,LOC107673743,LOC107660621 coding downstream 71549 18734419 ~ 18740056 (+)
G71334 NA non-coding upstream 115767 18543774 ~ 18543998 (+)
G71333 NA non-coding upstream 118429 18540883 ~ 18541336 (+)
G71331 NA non-coding upstream 121065 18538480 ~ 18538700 (+)
G71221 NA non-coding upstream 629217 18028361 ~ 18030548 (+)
G71167 NA non-coding upstream 1017327 17641910 ~ 17642438 (+)
G71442 LOC103022703,LOC103363874,LOC107673729,LOC107721018,LOC107596080,LOC107660614,LOC107555938 non-coding downstream 85041 18747911 ~ 18892052 (+)
LOC122351431 NA non-coding downstream 227053 18889923 ~ 18893969 (+)
G71457 LOC107662043,LOC107555909,LOC107741926,LOC107556197,LOC107660610,LOC107721020 non-coding downstream 317443 18980313 ~ 18985811 (+)
G71509 NA non-coding downstream 587969 19250839 ~ 19251157 (+)
G71517 NA non-coding downstream 593160 19256030 ~ 19256233 (+)
plcd4b plcd4b,LOC107741909,LOC107673750,LOC107714237,LOC107660629,LOC107596071 other upstream 17279 18635106 ~ 18642486 (+)
tfcp2l1 tfcp2l1,LOC107673739,LOC107714264,LOC107596086 other upstream 40378 18611995 ~ 18619387 (+)
clasp1a clasp1a,LOC107741904,LOC107555920,LOC107660633,LOC107673735,LOC107714287 other upstream 48837 18549936 ~ 18610928 (+)
lrp1bb lrp1b,LOC107661145,LOC107660661,LOC107746259,LOC107714450 other upstream 695521 17736006 ~ 17964244 (+)
G71130 NA other upstream 1320143 17339127 ~ 17339622 (+)
lmln lmln,LOC107741941,LOC107555912,LOC107673747,LOC107596075,LOC107714369,LOC107660656 other downstream 19802 18682672 ~ 18689542 (+)
cps1 cps1,LOC107660611,LOC107741925 other downstream 233732 18896602 ~ 18931462 (+)
vwc2l vwc2l,LOC107660607,LOC107657506,LOC107714362,LOC106586444 other downstream 849984 19512854 ~ 19543677 (+)
G71585 NA other downstream 958414 19621284 ~ 19621493 (+)
ormdl1 ormdl1,LOC107602148 other downstream 1046494 19709364 ~ 19714404 (+)

Expression


Co-expression Network