LOC122351856 (tlr20f,tlr20.2,LOC107598181)


Basic Information

Item Value
gene id LOC122351856
gene name tlr20f,tlr20.2,LOC107598181
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11392240 ~ 11396663 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249222.1
atatatatatatatatatatatatatatatatattttctgccTGCACACAGTTTACTaacacaccttttattttatatgtattttgttttgatcGGCTACTTTCGGTTAATATACCTTTACTGAAACATGCTGAGTTGTCTTAAATTCCCTAAAATGCTAGTAATTCCAAGACCAAtgtaaagtgaaatatttaataacataataaaacatacattacaTATGTCAAGTAGGTTGAATGTaagataatttatttaaatgttactttgtATACTCATAATTGTGATGGACATTTTGCttcttaaattatttatgtatgataCTGAAAATTTATACTTCCTTTGTAAAGCCTTTTTTACCATGTTTGAGCAATGGGATTTTCCATGTACATGGGGATCAAAACAATgggtatttcatttttttaaattgctttaaattactcaacatttaaacattacCATAAACATTGCTTACAAGCtctcaaaagtttgggattgccatttcatgcagtgtgttttacttttttgttgttgttggtggtggtgatatttatatgcaaaacaCCATAAATAAAATAGGCATATTCCAAATCTTGATGTCAGATCTTGATCCTAGCAAACTTTAAAAtgccatgattttttttactacacCAGGAGCTGATTACGTTTTGCTGTGTAATCAGGCCCTGCATGAGAATAATTCTTATGAGACTGCTCTTAAATTGGCTTATTTAGGGTTTCATTAACCTTCTtccaataaatattacaaagtgctgtaattcaataaaattattctgcttaataataatgactAAATGGCTAGATGGTTAATTTCCCTTTAAGTCCTAGTACATATGTATTAATGCAACAGATAAAGAAGGCAAGAGACTAAGAGTCATACATTAATAGAACGTGGAAACAGAAAAGGGAAGTCTAGTTCTTATTCAAATGTTCTCACATGGTTAATTACCTCCAGTCAAAGACAAAACAGCTATTGAAGATCATTAAAGGAGTTGAAGATGTTGCCACTGTTCTCACTTTTCATATTGTTTCTGAAGACTTCATGTGTATGTTCTTGGCTTGCTGGTAAATGCCTGTTCTACAGTGATGTGGAAGAGTTTGCTGTTTCCACGACCTGTCCTGGAAAGACAAACGTTGCAGAGTGCCATCATGTCACTGACATTAAAGAAGATCTGCGTGGACTTCCATCAAACTTGCTTAACCTCTGCATTAAAGTGGAACAAGGCTGTCATGGTGCCCTGACTCCAGGCTCATTCTCACGGTTTGTTTCTTTGGAATACCTTGAAATTGCTGGATGTTTTTCAGAGATCCCTCCAGAGGCTTTTAATGGATTGACCAATGTTACTTCATTAACATTGTCTTACTTGTCTTCAGAAATCTGTTGTGAGGTAGCTCTTGATTTCAGTCATCTTCTGTCACTTAACTCTTTGTCTCTTTCGCGGTACAGTTTATCATTATTGGcaccaaatgtttttgaaacagcTCCTCAGTTGcaagaaataaacatacttaatgtgtgtttaaaggaTATATCTGAGGTCCTCTGTCGACTGACAAAAGCATCATCCCTGAAGCTGTTTAATCTAAGGGAATATGAGCTACACAGACTTCAGTACCCAAACTGCTCAATGTTCAACACTTCTGATGCTCAGATACCGACTACTTTCAATATTGAAGAGTTGCATTTGTATCTAGGACGAGTAGATCATATAGACGAGGGAGCCTTAGACGTGTTGGGAAACCTCTCCGTTTTGGAATTTGTTTCAAACAATGATTTCCTCAGAGATCTTTCTTTAATTGGAGTTCATAAAATCAATACTTTAAACATCAGAGTAAATGAACTTAACGTTGATGACTTGTGTACAGCAGCAAAGTTATATTCAGTTGTGTCTTTAGACATTCGTTATATGACTATTCAGTTGCCACCAACTCCAATTAATATATCAGATGGCTGTAAGGATATTAAGAGAATTAATCTCAAGGGTAACATATTGATAGCCAAGATTGTAAATGTCTTAGATGTGCATTCAGTGTTTCAGATTTTCAGAAATCTAACTATTGTGAGCATAGTTAAGCATGTACTCAGACCAAATGATTTCCTATCTCTATGTGATTCATTTCCACAGACAGtcaaaaatctttcttttatgATGCTAAGCACCAACAACATAGATAAGATAGTATCCCaccaatatttctgttttgcagATCTTGAAATTCTGTACTTATCCAAAAGTGACATTTCTAGAATAGAAGATTTTGCTTTTATTGGACTGCACAAGTTAAAAGAACTAAAACTCAGTGAAAACAAGTTATCttacatttctcaaaaaatgTTCAGTGGTTTATATAGACTTCTGGTCTTAGATCTCCAAGAAAATCCTATAATTAATATTGAACCAAAATCATTTGGACATCTCATTAACCTTTGTTCAATTCTGCTGGGAGATCTGAACTTTCCACCTGATGTGCCTCTGATCAGACTGCATTTTTCTGACATGTTTGAAGTTATTCCATATaatttaagtaatgtttttattagttcagGCGTGAGGCCAATGCAGCTAGTGATCGGAAACAATGCTACAGTGGGTCAGGGTCTAAACTTACACATCAAAAGTAAATATGTGACCGTTGAGGACTGCAACAGTTCTCTCTTAAAATCAGTAGTCAGTCTTAAGATAAATGCAGCATATGTGAACTGTGGAAATGAATTCATTGGGAAATATATCAGATCTGTTGTCAATCTGGAATTTGAATCAATGTTCTCAGACAGCATTGGAGACTTGGCTGTAATCAATCagcttgttcatttaaaaacccTAAAACTGGAAAATATTGACCTGACGAAGCAGCCAAACCTTGCCATAATGTTTCACAATCTGACAAAACTCCAGACGCTGATCCTGACAAACTGCAGAATGTTCTTTCTGGATGAAAGTCTGACCAAAGACTTGAAAGCATTGAAGGGTCTAGTGCTTATGCCAAAAGATAACATCAACGTTCTTCAAAACTTGATGGAACATCTCACTAGCTTGAAGTACCTCTATCTTCTAAACTTGGGTCTGTACTGCAATTGTGGTAATGCATGGCTGGTCTCATGGGCAAAGGACAACAGGAAGGTGCAGGTTGCCATGTTCAGGCCCTCCATGAAAGAACTGCAGTGTTTCACCGAGAATGAAATTGGCGACCTCAACTTTGTTGCTTATTCCAAGAGCTGCTCATTTGATATTGAATTTATATTCTTCACCTCCACCTCAGCATTTTTGTGTGGTTTTATTATAGTTGTCCTGTCATATAAGTTTGCAGGTCAATACGTTGCGCCATTCTTTCACATTGCCAGCGGATGGTTTCTAGAGGCTTTGCGCATGAACAGTAAACACCAGTACCGCTATGACGTTTTTGTGTCTTACAGCAGTAAGGATGAGCACTGGGTCATTGACAAACTTCTTCCAAACTTAGAGCAGCGGGGCCCTCCGTTTTTGCGTCTCTGCCTGCACAGTCGAGACTTTCAGTTGGGACAAGATATTGTAGAAAACATTACGGACAGCATCTATGCAAGTCACCGGACTCTTTGTCTCGTCAGTCACAACTACCTCGGCAGCAACTGGTGTTCCTTGGAGATGCAGCTGGCCACGTACAGGCTTCAAGTGGAACACAGGGACATTCTCATCCTGGTCTTTCTAGAAGGGATTCCGTCTCGCTTGCTATCCTCTCATCATAGATTGGCCCGTCTGGTAAAAACTAGAACTTATCTAAACTGGCCACGGGACCTGGAGATGCATGAAGCATTCTGGGATAGGTTGTGGTGTAAACTGAGCTCTAATGAAACCAACTAGTATAAGGTTGTTTAGGGTTTAGCTccatgggaaaaaaagaaattcaacgACAGATGGGTAAGAAAACAAAATCTCTAAAACACTGATATTAAAAGCATAATcaagtaaaactatttttgtacctgtatttacttttttagcatgtataaaaaatgtttagcatGTGTAATATTGAATATGATTCATTGGGCAAACATGATATTTGGCTTTTGCAGTTAATCATTTCACATCTTTTAAAGTGTAGCACACTTTACAATTTTTATCAATCACTTTGGTTCAGTtctaaaaaataacttttttttttttttaataataagttcAAATGTGAACGATTAGTTTCTTGTTCACATCAGATTTTGatttattagtaatttaaaCACTGTGTTTTTGGAACGTGTACAAATGTCTACACTTTTGACAATAACTAACATTCTAAATTTCACAtgtgtgaaaataaaagtattatttttccCTTTGACTAaaaaattttactaaaaacagaaaaaaaagcaatactgAAACTTGTTGGTTATGTGTATATGGTTACATGCTGGAAACTTTTGGTTG

Function

symbol description
tlr20.2 Predicted to enable signaling receptor activity. Predicted to be involved in inflammatory response and toll-like receptor signaling pathway. Predicted to act upstream of or within innate immune response and signal transduction. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.
tlr20f Predicted to enable transmembrane signaling receptor activity. Predicted to act upstream of or within immune response and toll-like receptor signaling pathway. Predicted to be integral component of membrane.

NR:

description
PREDICTED: toll-like receptor 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249222.1 True 4424 mRNA 0.36 1 11392240 11396663

Neighbor

gene id symbol gene type direction distance location
tlr20.4 tlr20.2,tlr20f,LOC107598181 coding downstream 2862 11386377 ~ 11389378 (-)
lcmt2 lcmt2,LOC107663870,LOC107698535 coding downstream 160552 11225956 ~ 11231688 (-)
rab5b rab5b,LOC107551955,LOC107738511,LOC107598172,LOC107698530,LOC108430508,LOC108266395 coding downstream 175586 11210200 ~ 11216654 (-)
armc8 armc8,LOC107598169,LOC107551954,LOC107733643,LOC107663904,LOC107738509 coding downstream 187272 11193693 ~ 11204968 (-)
idh1 idh1,LOC107663883,LOC107698523 coding downstream 295559 11089670 ~ 11096681 (-)
gtpbp8 si:rp71-84d19.3,LOC107663822,LOC107567641,LOC107738531,LOC107733632,LOC107598183 coding upstream 3888 11400551 ~ 11404296 (-)
LOC122352021 hs6st3b,LOC107555209,LOC107733651,LOC107663930,LOC107600438,LOC107720131,LOC107655503 coding upstream 57406 11454069 ~ 11464414 (-)
efnb2a efnb2a,efnb2,LOC107555860,LOC107563180,LOC107675360,LOC105018709 coding upstream 586305 11982968 ~ 12000692 (-)
arglu1a arglu1a,LOC107555859,LOC107673121,LOC107711396,LOC107577473,LOC107675355,LOC106586866 coding upstream 607341 12004004 ~ 12009937 (-)
zeb2a zeb2a,LOC107711399,LOC107675348,LOC107563183 coding upstream 800091 12196754 ~ 12244788 (-)
G69467 NA non-coding downstream 26421 11358950 ~ 11365819 (-)
G69396 NA non-coding downstream 361747 11029377 ~ 11030493 (-)
G69362 NA non-coding downstream 438255 10947044 ~ 10953985 (-)
LOC122351427 NA non-coding downstream 445496 10930480 ~ 10946744 (-)
LOC122351998 NA non-coding upstream 394118 11790781 ~ 11954234 (-)
G69596 NA non-coding upstream 689051 12085714 ~ 12156439 (-)
LOC122351183 NA non-coding upstream 871449 12268112 ~ 12270147 (-)
G69607 NA non-coding upstream 883130 12279793 ~ 12280197 (-)
LOC122351337 NA non-coding upstream 907051 12303714 ~ 12321820 (-)
mrasa LOC107551943,LOC107663912,LOC107733654,LOC107600440,LOC107738526 other downstream 705613 10680158 ~ 10686627 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other downstream 872783 10515272 ~ 10519457 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other downstream 948621 10433507 ~ 10443619 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other downstream 1482062 9908188 ~ 9910178 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other downstream 3297393 8076468 ~ 8094847 (-)
LOC122351858 slc10a2,LOC107663831,LOC107567642,LOC107675341,LOC107738529 other upstream 3 11396666 ~ 11493120 (-)
LOC122351308 si:rp71-84d19.3,gtpbp8,LOC107663822,LOC107567641,LOC107738531,LOC107733632,LOC107598183 other upstream 100284 11496947 ~ 11500495 (-)
gtdc1 gtdc1,LOC107709416,LOC107555857,LOC107563182,LOC107675364,LOC107673117 other upstream 694468 12091131 ~ 12194961 (-)
G69650 NA other upstream 1025766 12422429 ~ 12423446 (-)
lrch1 lrch1,LOC107709425,LOC107601076,LOC107673127,LOC107724026 other upstream 1121621 12518284 ~ 12582425 (-)

Expression


Co-expression Network