nepro (si:dkey-22a1.3,LOC107733637)


Basic Information

Item Value
gene id nepro
gene name si:dkey-22a1.3,LOC107733637
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11382392 ~ 11385994 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249225.1
CATGAACAGGCGCGTGATTGGCTGATTTCCTCCGACGTTCGACATCCGTAAACATGGCGCAGGAACCCTGGAATAAAATTCATATCCCGTTTCCAAGTGCTTTTTCTTCGAGTCGAATCCCATTTACTGATTCAAATGATCTCTTGATTGAAAGTCTGCTGACCGACTGTGAGAAAGTGTTGACCCTGTTAAGTAGTGAAGTTCTACAGACAGAAATCCGTGTTCTGTACGAACTTCTTCATGTTTTGAACAACAGCTTTCGACAACACAAGCCGTTCAGAGCATTAAAGCAGGTTGAACAATGTGTAAACCGTTTGAAAGAGATGAAGTTAAAAGAAGCAGTGGAAGATCTGAAGGAACTGTGTCCAAACAAATTTCAAAGgGATGCTGGCGCAGAGGTTGGGGAGTGTGACCTTCCCAGTCAGCCCATGTTGGAGTGGCTCTGTCTTAAACTATTAGGAGCCTCCAGTCTTTTAGCCCGAACACTGGAGCGGTGCACTCAAGCTTTCATGCTGGCACGGCAGCACATTCTGCTGAGTGAGTTCATTGTGCTGAATGTGGTGATAACCAGCATGCTTAGTCGTCTCTGggtGTTCTTCAGAGGTATTCTGAAAGCCCTCATTCCCATGTACAAAGGAACCACTGAACTCCTCCAGGAGGTCTCTCGGTCTCAGCCCATGCCCTACCTGACTGACTTCACCCTGCCTCGGGGCCTGAAAGACTTCCTTTGTCTCTCATACCCAGATCTACTGTTGGAAGAAGGCACCAAAGACCCTTTAAGGggcaaaaaagggaaaaagaacATTTCTCTCCTTTCCAGGTTGTTTGAGAGTAAAGGGCGAGAAGAGGAGAGCGAGATGATGCCAGTAGTAGCAGCTGTATTTGTGAAAGGTTCCAGTCTGGACATGGGGGCAGCAGTTTTACAAAGACGGCCAGGTTATTCAGATTTGTTACCCTGTGGACTGGACATAAAGTTTGTGCTTCAAAAATCTTGTAAATCCACCAAACAGATGTCTTTAGAACCAGAGATGAAAACAGACATCACAAGTCAAGCTGCAGGCTTTCAAATGAGGAAGTTCTTGAAGTCACTGAGAAAGGTGTCTTCTTTCAGAAATATGGCTGTTCATCTGAAGAAAATGATACACTTGTGCCGGAGCTGTAAGTTTCATCAAGTGCGCAAATACCTAGCCTTCTTGCACCTCAAATGTCTGAGAATGGAAAGTCTGGAAGCTGAAGGTGTCAgggTGGAGAAGAGATtgaagacatttaaatgtacagttcAAAAGGCATTGACTCCTCAAAAGACCTTGcgaaaaaaacattcattcagcATCATGACACGCAACAGAACCGCCAGATGTAGATCTGTATCTTCCAGGAAGTGTTCTAGACCAGTTAAAGACAGGCCACAGCAAGAATCCCCGAAAAAAGAGGTATTAGGAAACAATAAGTTACCTGGAGCTGAGGAAAAAATAGACTCAGAGGCTGCCTTGCAGAAACCAAATATGCTGAATGACgatattgataatatttttgaatcatttggaTTTTAAGTGATTCATAGTGTTGGTTGAAtgcaatgttgttgttttttatttccacaaaaaCTGACCACATCACTAAATAAGccacaattaaatgaaatggtgtatatttgactttttctatacaattttaattttgtaaagaaataatgtttaacaAATGACAGATGATGGACAATGAACTGCATAGAATGTGAAAAcccaaagaaataaaaacaaaatagtcaAAAGGAAA

Function

NR:

description
nucleolus and neural progenitor protein

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249225.1 True 1779 mRNA 0.42 10 11382392 11385994

Neighbor

gene id symbol gene type direction distance location
tex30 tex30,LOC107663828,LOC107567637 coding upstream 440 11379870 ~ 11381952 (+)
poglut2 kdelc1,LOC107567637,LOC107733631,LOC107675345 coding upstream 2970 11372926 ~ 11379422 (+)
stxbp5l stxbp5l,LOC107738516,LOC107663865,LOC107675353 coding upstream 9821 11263726 ~ 11372571 (+)
gtf2e1 gtf2e1,LOC107733656,LOC107738514 coding upstream 137962 11232007 ~ 11244430 (+)
crygs2 crygs2,LOC107663869,LOC107551958,LOC107733648,LOC107598173,LOC107698534 coding upstream 156559 11224548 ~ 11225833 (+)
arhgap15 arhgap15,LOC107673132,LOC107709415,LOC107555858,LOC107563181,LOC107711394,LOC107675340 coding downstream 660480 12046474 ~ 12086508 (+)
LOC122351360 arhgap15,LOC107673132,LOC107709415,LOC107555858,LOC107563181,LOC107711394,LOC107675340 coding downstream 736237 12122231 ~ 12155973 (+)
acvr2aa LOC107709421,LOC107673126,LOC107675352,LOC107601072 coding downstream 1006292 12392286 ~ 12429356 (+)
med4 med4,LOC107724027,LOC107673119,LOC107601074,LOC107709409,LOC107675337 coding downstream 1067132 12453126 ~ 12456128 (+)
htr2aa htr2a,htr2aa,LOC107673120,LOC107709424,LOC107601068,LOC107724025,LOC107675342 coding downstream 1096180 12482174 ~ 12507487 (+)
G69459 NA non-coding upstream 136914 11245151 ~ 11245478 (+)
G69417 armc8,LOC107733643,LOC107663904,LOC107551954 non-coding upstream 181227 11200651 ~ 11201165 (+)
G69403 NA non-coding upstream 291958 11063601 ~ 11090434 (+)
G69358 NA non-coding upstream 440868 10941308 ~ 10941524 (+)
G69355 NA non-coding upstream 458915 10923149 ~ 10923477 (+)
G69483 NA non-coding downstream 34211 11420205 ~ 11423317 (+)
G69518 NA non-coding downstream 593787 11979781 ~ 12009922 (+)
G69539 NA non-coding downstream 813940 12199934 ~ 12200597 (+)
G69578 NA non-coding downstream 936257 12322251 ~ 12322532 (+)
G69625 NA non-coding downstream 1071270 12457264 ~ 12457498 (+)
creb1b creb1b,creb1,LOC107598164,LOC107738506,LOC107698524,LOC107663917 other upstream 351983 11021736 ~ 11030409 (+)
il1rapl1a il1rapl1a,LOC107655515,LOC107600393,LOC107663843,LOC107555221,LOC107706095 other upstream 987162 10328731 ~ 10395230 (+)
si:dkey-100n23.5 LOC107748207,LOC107555230,LOC107720121,LOC107655523 other upstream 1207609 10167336 ~ 10174783 (+)
piga piga,LOC107748211,LOC107555234,LOC107663925,LOC107655498,LOC107600385,LOC107720146 other upstream 1269036 10092350 ~ 10113356 (+)
thsd7ba thsd7b,thsd7ba,LOC107663893,LOC107751610,LOC107720322,LOC107658187,LOC107658188,LOC107558036 other upstream 1815395 9443125 ~ 9566997 (+)
LOC122352020 uggt2,LOC107600415,LOC107720140,LOC107663813,LOC107655477,LOC108430493,LOC107706079,LOC108266228 other downstream 79610 11465604 ~ 11490149 (+)
G69527 arhgap15,LOC107563181,LOC107673132,LOC107709415,LOC107555858,LOC107675340,LOC107711394 other downstream 660505 12046499 ~ 12155804 (+)
epc2 epc2,itm2b,LOC107709422,LOC107724031,LOC107675331,LOC107673124,LOC107709423 other downstream 1048994 12434988 ~ 12452365 (+)
G69670 LOC107673130,LOC107555834,LOC107709428,LOC107724029,LOC107675357 other downstream 1241541 12627535 ~ 12629535 (+)
LOC122351618 clasp1a,clasp2,LOC107741904,LOC107714287,LOC107673735,LOC107596084,LOC107706129,LOC107696541,LOC107669402 other downstream 1346304 12732298 ~ 12803408 (+)

Expression


Co-expression Network