LOC122351872 (LOC107664838,LOC107555339,LOC107568713,LOC107555340,LOC107724463,LOC107723663)


Basic Information

Item Value
gene id LOC122351872
gene name LOC107664838,LOC107555339,LOC107568713,LOC107555340,LOC107724463,LOC107723663
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14114764 ~ 14115575 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249254.1
ATGATGAGCAagGTCACCTTCTACGAGGAAAGGAACTTCCAGGGTCGCTCTTATGAGTGTATGAGCGACTGTGCCGATTTCTCCTCCTACATGAGCCGCTGTCACTCTTGTAGAGTTGAGAGTGGATGCTGGATGATGTATGACCGTCCCAATTACATGGGAAACCAGTATTTCTTCAGGAGGGGAGACTATGCTGATTATATGTCTATGtttggaatgaatgaatgcatcaGATCCTGCCGTATGATCCCTATGCACAGGGGATCCTACAGAATGAGGATCTACGAGAGGGAGAACTTCATGGGTCAGATGTACGAGATGATGGATGACTGTGACAGCATCATGGACCGTTACCGCATGTCTCACTGCCAGTCCTGTCATGTGATGGACGGCCACTGGCTCTTCTATGAGCAGCCCCACTACAGAGGCAGGATGTGGTACTTCAGGCCTGGAGAGTACAGGAACTTCAGCAACTTTGGAGGCATGAGATTCATGAGCATGAGGCGTATCATGGACTCCTGGTATTAG

Function

NR:

description
PREDICTED: gamma-crystallin M2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249254.1 True 528 mRNA 0.49 3 14114764 14115575

Neighbor

gene id symbol gene type direction distance location
LOC122351888 LOC107664838,LOC107555340,LOC107555341,LOC107555339,LOC107723663,LOC107568713 coding upstream 2543 14111496 ~ 14112221 (+)
LOC122351867 LOC107664838,LOC107555339,LOC107555340,LOC107723663,LOC107555341 coding upstream 7339 14106611 ~ 14107425 (+)
crygm5 crygm5,LOC107555331 coding upstream 11815 14102114 ~ 14102949 (+)
crygm3 crygm3,LOC107555346,LOC107723665,LOC107705175,LOC107658283,LOC107555044,LOC107670564 coding upstream 14314 14098129 ~ 14100450 (+)
neb neb,LOC107725229,LOC107658288,LOC107555350,LOC107678501 coding upstream 219408 13841132 ~ 13895356 (+)
LOC122351873 LOC107555343,LOC107597401,LOC107668100,LOC107664838,LOC107597402,LOC107555340,LOC107724463 coding downstream 2048 14117623 ~ 14119257 (+)
LOC122351490 crygm2d12,LOC107597401,LOC107664838,LOC107555340,LOC107597402,LOC107723668,LOC107555341 coding downstream 4621 14120196 ~ 14123528 (+)
LOC122351238 LOC107664838,LOC107555340,LOC107555341,LOC107555339,LOC107723663 coding downstream 13273 14128848 ~ 14129642 (+)
LOC122351239 LOC107724463,LOC107664838,LOC107555344,LOC107555340,LOC107555341 coding downstream 17252 14132827 ~ 14134121 (+)
LOC122351860 LOC107664838,LOC107555340,LOC107555341,LOC107568713 coding downstream 21548 14137123 ~ 14137939 (+)
G70064 NA non-coding upstream 175034 13931619 ~ 13939730 (+)
G70045 si:dkey-91i10.3,LOC107658292,LOC107725254,LOC107555015,LOC107683415,LOC107723676,LOC107555356 non-coding upstream 327643 13777632 ~ 13787121 (+)
G70043 NA non-coding upstream 345335 13769229 ~ 13769429 (+)
G70032 NA non-coding upstream 422277 13692214 ~ 13692487 (+)
LOC122351436 LOC107555330 non-coding upstream 425731 13686665 ~ 13689033 (+)
LOC122352011 NA non-coding downstream 190972 14306547 ~ 14329484 (+)
G70125 NA non-coding downstream 216725 14332300 ~ 14335751 (+)
G70181 NA non-coding downstream 463695 14579270 ~ 14580468 (+)
G70184 NA non-coding downstream 468656 14584231 ~ 14584488 (+)
G70185 NA non-coding downstream 469016 14584591 ~ 14585026 (+)
ccnt2a ccnt2a,LOC107658298,LOC107725237,LOC107723659,LOC107684218,LOC107555058,LOC107555362 other upstream 429929 13676163 ~ 13684835 (+)
G69834 col6a3,LOC107685998,LOC107567775,LOC107670696 other upstream 810173 13289693 ~ 13304591 (+)
G69755 NA other upstream 1128786 12984868 ~ 12985978 (+)
LOC122351618 clasp1a,clasp2,LOC107741904,LOC107714287,LOC107673735,LOC107596084,LOC107706129,LOC107696541,LOC107669402 other upstream 1311356 12732298 ~ 12803408 (+)
G69670 LOC107673130,LOC107555834,LOC107709428,LOC107724029,LOC107675357 other upstream 1485229 12627535 ~ 12629535 (+)
LOC122351767 NA other downstream 471507 14587082 ~ 14589439 (+)
si:ch211-168k14.2 si:ch211-168k14.2,LOC107681321,LOC107748618,LOC108441415,LOC105905900,LOC108266656,LOC107600399 other downstream 1285552 15401127 ~ 15425361 (+)
LOC122351678 hspe1,mob4,LOC107690609,LOC107595852,LOC107569672,LOC107731766,LOC106586370,LOC105016277,LOC100701317,LOC103156730,LOC101472107,LOC102310674,LOC102783361,LOC108238849,LOC107690608,LOC106582314,LOC105899369 other downstream 1592626 15708201 ~ 15715901 (+)
plcl1 LOC107569711,LOC107731752,LOC107690606,LOC107719808,LOC107659890,LOC107595846 other downstream 1618995 15734570 ~ 15789702 (+)
rabl3 rabl3,LOC107569739,LOC107690631,LOC107659889,LOC107595844,LOC107736356 other downstream 1783852 15899427 ~ 15901720 (+)

Expression


Co-expression Network