LOC122351888 (LOC107664838,LOC107555340,LOC107555341,LOC107555339,LOC107723663,LOC107568713)


Basic Information

Item Value
gene id LOC122351888
gene name LOC107664838,LOC107555340,LOC107555341,LOC107555339,LOC107723663,LOC107568713
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14111496 ~ 14112221 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249275.1
ATGATGGGCAAGGTCATCTTCTACGAGGACAGGAACTTCCAGGGTCGCTCTTGGGAGTGTATGGGCGACAGTGGAGACTTCTCCTCCTACATGAGCCGCTGTCACTCTTGTAGAGTTGAGAGTGGATGCTGGATGATGTACGATCAACCCAACTACATGGGAAACCAGTATTTCTTCAGGAGGGGCGAATATGCTGATTACATGTCTATGTTTGGAATGAACAACTGCATCAGATCCTGCCGTATGATCCCTATGCACAGGGGATCCTACAGAATGAGGATCTACGAGAGGGAGAACTTCATGGGACAGATGTACGAGATGATGGATGACTGTGACAGCATCATGGACCGTTACCGCATGTCTCACTGCCAGTCCTGTCATGTGATGGACGGCCACTGGCTCTTCTATGAGCAGCCCCACTACAGAGGCAGGATGTGGTACTTCAGGCCTGGAGAGTACAGGAACTTCAGCAATTTTGGAGGCATGAGATTCATGAGCATGAGGCGTATCATGGACTCCTGGTACTAG

Function

NR:

description
PREDICTED: gamma-crystallin M2 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249275.1 True 528 mRNA 0.50 3 14111496 14112221

Neighbor

gene id symbol gene type direction distance location
LOC122351867 LOC107664838,LOC107555339,LOC107555340,LOC107723663,LOC107555341 coding upstream 4071 14106611 ~ 14107425 (+)
crygm5 crygm5,LOC107555331 coding upstream 8547 14102114 ~ 14102949 (+)
crygm3 crygm3,LOC107555346,LOC107723665,LOC107705175,LOC107658283,LOC107555044,LOC107670564 coding upstream 11046 14098129 ~ 14100450 (+)
neb neb,LOC107725229,LOC107658288,LOC107555350,LOC107678501 coding upstream 216140 13841132 ~ 13895356 (+)
arl5a arl5a,LOC107555355 coding upstream 276417 13824418 ~ 13835079 (+)
LOC122351872 LOC107664838,LOC107555339,LOC107568713,LOC107555340,LOC107724463,LOC107723663 coding downstream 2543 14114764 ~ 14115575 (+)
LOC122351873 LOC107555343,LOC107597401,LOC107668100,LOC107664838,LOC107597402,LOC107555340,LOC107724463 coding downstream 5402 14117623 ~ 14119257 (+)
LOC122351490 crygm2d12,LOC107597401,LOC107664838,LOC107555340,LOC107597402,LOC107723668,LOC107555341 coding downstream 7975 14120196 ~ 14123528 (+)
LOC122351238 LOC107664838,LOC107555340,LOC107555341,LOC107555339,LOC107723663 coding downstream 16627 14128848 ~ 14129642 (+)
LOC122351239 LOC107724463,LOC107664838,LOC107555344,LOC107555340,LOC107555341 coding downstream 20606 14132827 ~ 14134121 (+)
G70064 NA non-coding upstream 171766 13931619 ~ 13939730 (+)
G70045 si:dkey-91i10.3,LOC107658292,LOC107725254,LOC107555015,LOC107683415,LOC107723676,LOC107555356 non-coding upstream 324375 13777632 ~ 13787121 (+)
G70043 NA non-coding upstream 342067 13769229 ~ 13769429 (+)
G70032 NA non-coding upstream 419009 13692214 ~ 13692487 (+)
LOC122351436 LOC107555330 non-coding upstream 422463 13686665 ~ 13689033 (+)
LOC122352011 NA non-coding downstream 194326 14306547 ~ 14329484 (+)
G70125 NA non-coding downstream 220079 14332300 ~ 14335751 (+)
G70181 NA non-coding downstream 467049 14579270 ~ 14580468 (+)
G70184 NA non-coding downstream 472010 14584231 ~ 14584488 (+)
G70185 NA non-coding downstream 472370 14584591 ~ 14585026 (+)
ccnt2a ccnt2a,LOC107658298,LOC107725237,LOC107723659,LOC107684218,LOC107555058,LOC107555362 other upstream 426661 13676163 ~ 13684835 (+)
G69834 col6a3,LOC107685998,LOC107567775,LOC107670696 other upstream 806905 13289693 ~ 13304591 (+)
G69755 NA other upstream 1125518 12984868 ~ 12985978 (+)
LOC122351618 clasp1a,clasp2,LOC107741904,LOC107714287,LOC107673735,LOC107596084,LOC107706129,LOC107696541,LOC107669402 other upstream 1308088 12732298 ~ 12803408 (+)
G69670 LOC107673130,LOC107555834,LOC107709428,LOC107724029,LOC107675357 other upstream 1481961 12627535 ~ 12629535 (+)
LOC122351767 NA other downstream 474861 14587082 ~ 14589439 (+)
si:ch211-168k14.2 si:ch211-168k14.2,LOC107681321,LOC107748618,LOC108441415,LOC105905900,LOC108266656,LOC107600399 other downstream 1288906 15401127 ~ 15425361 (+)
LOC122351678 hspe1,mob4,LOC107690609,LOC107595852,LOC107569672,LOC107731766,LOC106586370,LOC105016277,LOC100701317,LOC103156730,LOC101472107,LOC102310674,LOC102783361,LOC108238849,LOC107690608,LOC106582314,LOC105899369 other downstream 1595980 15708201 ~ 15715901 (+)
plcl1 LOC107569711,LOC107731752,LOC107690606,LOC107719808,LOC107659890,LOC107595846 other downstream 1622349 15734570 ~ 15789702 (+)
rabl3 rabl3,LOC107569739,LOC107690631,LOC107659889,LOC107595844,LOC107736356 other downstream 1787206 15899427 ~ 15901720 (+)

Expression


Co-expression Network