esd (esd,LOC107675365,LOC107601075,LOC107709410,LOC107724032)


Basic Information

Item Value
gene id esd
gene name esd,LOC107675365,LOC107601075,LOC107709410,LOC107724032
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 12514296 ~ 12518069 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249285.1
GAAAAACGTAGGGGGCGTGGCTTCGTGGCTTACGCTGACCCTGACGTCGCACTGAACTCTGGATCCTGTAGCTGTAGCGtacaGTAAACGGTGCAATGGCATTAACGCAAGTTTCTTCTAACAAGTGCTGCGATGGATATCAGAAAGTGTTCGAGCATGACAGCTCCgagttaaaatgcaaaatgaagtTTGGCATATACCTTCCTCCCAAGGCTGAGAGCTCCAAATGCCCAGTGTTATACTGGCTTTCAGGGTTGACATGCACAGAGCAAAACTTCATCACTAAGGCAGGCAGTCAGCAGACAGCTTCTGAACATGGGATCATCATCGTAGCTCCTGACACCAGTCCACGTGGCTGTAACATTGAAGGGGAGGAAGAGAGCTGGGATTTCGGCACAGGTGCAGGATTTTACATCAATGCCACCCAGGAGCCCTGGAAGACCAACTACCGCATGTACTCGTATGTCACCGAGGAGctcCCACGACTGATTAATTCAAACTTTCCTGCTGATCCGGAGAAGATGTCCATCTCTGGTCACTCCATGGGGGGCCACGGAGCTCTCATTTGTGCACTTAAGAATCCTGGGAAATATAAGTCTGTGTCGGCTTTTGCACCCATCTGTAACCCTGTACAATGTGCGTGGGGTCAGAAAGCTTTTTCTGGCTATCTTGGATCTGACAAGTCCACCTGGGAGGTATATGATGCTACTGTATTGGCTGAATCATACTCCGGTCCTGAGCTTGATATTCTGATTGATCAAGGCCGTGATGACCAGTTCTTGTCCTCCAGTCAGCTGCTTCCTGACAATCTGATCGCTGCCTGTTCTAAGAAGAAAATTCCTGTCGTTTTCCGCCTTCAGCAGGGTTATGATCACAGCTACTATTTCATCTTCTCCTTCATCAACGACCACATCAAGCACCATGCCAAATATCTGAACGCCTGAAACTGCCCGTCACGAGTATAGCAGCAAGCCTTTGTGCCTTTCAGACCGTAATAACACCTACAGGACCTACACAGCTGAAAAGCCATGCCCTGACCATAACTCACTCTATATTTTCTAGTCCATAAACAATAGGGTGATGTTTAAGTGTCAAGACatacacatttctttaaataaaggcGTTTGGTTgtggttttgta
>XM_043249286.1
GCTTCGTGGCTTACGCTGACCCTGACGTCGCACTGAACTCTGGATCCTGTAGCTGTAGCGTAAACGGTGCAATGGCATTAACGCAAGTTTCTTCTAACAAGTGCTGCGATGGATATCAGAAAGTGTTCGAGCATGACAGCTCCgagttaaaatgcaaaatgaagtTTGGCATATACCTTCCTCCCAAGGCTGAGAGCTCCAAATGCCCAGTGTTATACTGGCTTTCAGGGTTGACATGCACAGAGCAAAACTTCATCACTAAGGCAGGCAGTCAGCAGACAGCTTCTGAACATGGGATCATCATCGTAGCTCCTGACACCAGTCCACGTGGCTGTAACATTGAAGGGGAGGAAGAGAGCTGGGATTTCGGCACAGGTGCAGGATTTTACATCAATGCCACCCAGGAGCCCTGGAAGACCAACTACCGCATGTACTCGTATGTCACCGAGGAGctcCCACGACTGATTAATTCAAACTTTCCTGCTGATCCGGAGAAGATGTCCATCTCTGGTCACTCCATGGGGGGCCACGGAGCTCTCATTTGTGCACTTAAGAATCCTGGGAAATATAAGTCTGTGTCGGCTTTTGCACCCATCTGTAACCCTGTACAATGTGCGTGGGGTCAGAAAGCTTTTTCTGGCTATCTTGGATCTGACAAGTCCACCTGGGAGGTATATGATGCTACTGTATTGGCTGAATCATACTCCGGTCCTGAGCTTGATATTCTGATTGATCAAGGCCGTGATGACCAGTTCTTGTCCTCCAGTCAGCTGCTTCCTGACAATCTGATCGCTGCCTGTTCTAAGAAGAAAATTCCTGTCGTTTTCCGCCTTCAGCAGGGTTATGATCACAGCTACTATTTCATCTTCTCCTTCATCAACGACCACATCAAGCACCATGCCAAATATCTGAACGCCTGAAACTGCCCGTCACGAGTATAGCAGCAAGCCTTTGTGCCTTTCAGACCGTAATAACACCTACAGGACCTACACAGCTGAAAAGCCATGCCCTGACCATAACTCACTCTATATTTTCTAGTCCATAAACAATAGGGTGATGTTTAAGTGTCAAGACatacacatttctttaaataaaggcGTTTGGTTgtggttttgta
>XM_043249287.1
CATGAAAAGGAGTGTTACACGGGAGCCAAATAATACGGAACTTCAATAAGCGGACATTTTGGCATTATTTGAAACGAACCCGAAGCGTTTCTTTGGGTCGTTTTCTGCAGATCCTGCAAGCGGTGCCGTGAGTCTGGCAGGCCAGTTACTGCGTAAACGGTGCAATGGCATTAACGCAAGTTTCTTCTAACAAGTGCTGCGATGGATATCAGAAAGTGTTCGAGCATGACAGCTCCgagttaaaatgcaaaatgaagtTTGGCATATACCTTCCTCCCAAGGCTGAGAGCTCCAAATGCCCAGTGTTATACTGGCTTTCAGGGTTGACATGCACAGAGCAAAACTTCATCACTAAGGCAGGCAGTCAGCAGACAGCTTCTGAACATGGGATCATCATCGTAGCTCCTGACACCAGTCCACGTGGCTGTAACATTGAAGGGGAGGAAGAGAGCTGGGATTTCGGCACAGGTGCAGGATTTTACATCAATGCCACCCAGGAGCCCTGGAAGACCAACTACCGCATGTACTCGTATGTCACCGAGGAGctcCCACGACTGATTAATTCAAACTTTCCTGCTGATCCGGAGAAGATGTCCATCTCTGGTCACTCCATGGGGGGCCACGGAGCTCTCATTTGTGCACTTAAGAATCCTGGGAAATATAAGTCTGTGTCGGCTTTTGCACCCATCTGTAACCCTGTACAATGTGCGTGGGGTCAGAAAGCTTTTTCTGGCTATCTTGGATCTGACAAGTCCACCTGGGAGGTATATGATGCTACTGTATTGGCTGAATCATACTCCGGTCCTGAGCTTGATATTCTGATTGATCAAGGCCGTGATGACCAGTTCTTGTCCTCCAGTCAGCTGCTTCCTGACAATCTGATCGCTGCCTGTTCTAAGAAGAAAATTCCTGTCGTTTTCCGCCTTCAGCAGGGTTATGATCACAGCTACTATTTCATCTTCTCCTTCATCAACGACCACATCAAGCACCATGCCAAATATCTGAACGCCTGAAACTGCCCGTCACGAGTATAGCAGCAAGCCTTTGTGCCTTTCAGACCGTAATAACACCTACAGGACCTACACAGCTGAAAAGCCATGCCCTGACCATAACTCACTCTATATTTTCTAGTCCATAAACAATAGGGTGATGTTTAAGTGTCAAGACatacacatttctttaaataaaggcGTTTGGTTgtggttttgta

Function

symbol description
esd Predicted to enable S-formylglutathione hydrolase activity. Predicted to act upstream of or within formaldehyde catabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in female organism; intestinal bulb; and liver. Orthologous to human ESD (esterase D).

NR:

description
S-formylglutathione hydrolase-like

GO:

id name namespace
GO:0046294 formaldehyde catabolic process biological_process
GO:0018738 S-formylglutathione hydrolase activity molecular_function

KEGG:

id description
K01070 frmB, ESD, fghA; S-formylglutathione hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249285.1 False 1141 mRNA 0.47 9 12514296 12518069
XM_043249286.1 False 1117 mRNA 0.47 9 12514315 12518069
XM_043249287.1 True 1210 mRNA 0.47 9 12514412 12518069

Neighbor

gene id symbol gene type direction distance location
htr2aa htr2a,htr2aa,LOC107673120,LOC107709424,LOC107601068,LOC107724025,LOC107675342 coding upstream 6809 12482174 ~ 12507487 (+)
med4 med4,LOC107724027,LOC107673119,LOC107601074,LOC107709409,LOC107675337 coding upstream 58168 12453126 ~ 12456128 (+)
acvr2aa LOC107709421,LOC107673126,LOC107675352,LOC107601072 coding upstream 84940 12392286 ~ 12429356 (+)
LOC122351360 arhgap15,LOC107673132,LOC107709415,LOC107555858,LOC107563181,LOC107711394,LOC107675340 coding upstream 358323 12122231 ~ 12155973 (+)
arhgap15 arhgap15,LOC107673132,LOC107709415,LOC107555858,LOC107563181,LOC107711394,LOC107675340 coding upstream 427788 12046474 ~ 12086508 (+)
rubcnl rubcnl,LOC107709411,LOC107673128 coding downstream 36544 12554613 ~ 12560394 (+)
dnah7 dnah7 coding downstream 44390 12562459 ~ 12619422 (+)
LOC122352187 NA coding downstream 212767 12730836 ~ 12730962 (+)
LOC122351844 sf3b1,LOC107731751,LOC107659892,LOC107719800,LOC107690614,LOC107595847,LOC107569635 coding downstream 259501 12777570 ~ 12787437 (+)
LOC122351846 ankrd44,LOC107719801,LOC107659898,LOC107595853 coding downstream 271221 12789290 ~ 12811475 (+)
G69625 NA non-coding upstream 56798 12457264 ~ 12457498 (+)
G69578 NA non-coding upstream 191764 12322251 ~ 12322532 (+)
G69539 NA non-coding upstream 313699 12199934 ~ 12200597 (+)
G69518 NA non-coding upstream 504374 11979781 ~ 12009922 (+)
G69483 NA non-coding upstream 1090979 11420205 ~ 11423317 (+)
G69659 LOC107709425,LOC107724026 non-coding downstream 220 12518289 ~ 12526873 (+)
G69706 NA non-coding downstream 146943 12665012 ~ 12724840 (+)
G69718 NA non-coding downstream 255265 12773334 ~ 12773850 (+)
G69723 NA non-coding downstream 319650 12837719 ~ 12840151 (+)
G69783 NA non-coding downstream 588211 13106280 ~ 13106757 (+)
epc2 epc2,itm2b,LOC107709422,LOC107724031,LOC107675331,LOC107673124,LOC107709423 other upstream 61931 12434988 ~ 12452365 (+)
G69527 arhgap15,LOC107563181,LOC107673132,LOC107709415,LOC107555858,LOC107675340,LOC107711394 other upstream 358492 12046499 ~ 12155804 (+)
LOC122352020 uggt2,LOC107600415,LOC107720140,LOC107663813,LOC107655477,LOC108430493,LOC107706079,LOC108266228 other upstream 1024147 11465604 ~ 11490149 (+)
creb1b creb1b,creb1,LOC107598164,LOC107738506,LOC107698524,LOC107663917 other upstream 1483887 11021736 ~ 11030409 (+)
il1rapl1a il1rapl1a,LOC107655515,LOC107600393,LOC107663843,LOC107555221,LOC107706095 other upstream 2119066 10328731 ~ 10395230 (+)
G69670 LOC107673130,LOC107555834,LOC107709428,LOC107724029,LOC107675357 other downstream 109466 12627535 ~ 12629535 (+)
LOC122351618 clasp1a,clasp2,LOC107741904,LOC107714287,LOC107673735,LOC107596084,LOC107706129,LOC107696541,LOC107669402 other downstream 214229 12732298 ~ 12803408 (+)
G69755 NA other downstream 466799 12984868 ~ 12985978 (+)
G69834 col6a3,LOC107685998,LOC107567775,LOC107670696 other downstream 771624 13289693 ~ 13304591 (+)
ccnt2a ccnt2a,LOC107658298,LOC107725237,LOC107723659,LOC107684218,LOC107555058,LOC107555362 other downstream 1158094 13676163 ~ 13684835 (+)

Expression


Co-expression Network