scrn3 (scrn3,LOC107739455,LOC107671317,LOC107588231,LOC107657366,LOC107600698)


Basic Information

Item Value
gene id scrn3
gene name scrn3,LOC107739455,LOC107671317,LOC107588231,LOC107657366,LOC107600698
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4120527 ~ 4127013 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249288.1
TGAATCAGATAGCCCTGCATGCGGATTTCTGTCAAGTGCGGCCAGTTTTGTTTATGgagaaaggaaaaggaaagtAAACACATGTTTAATTTCATCGAACAGAGAAGCGATTCTCGTCACACCTGCTATTTTTATATACGCTGAGTCGGCCAAGGTTAAGATGTACCCGACCTCCTGCGACACATTTGTAGCCCTGCCTCCATCCACGGAGGGTCAGCGGATAGTCTTCGGGAAGAACTCCGACAGACCCTGCGATGAAGTTCAAGAGGTGGTCCACTTCCCCGCCAAAACGCATGAACCGGACGAGAAAGTGGAGtgtacatacatacagataGAGCAGGTGGCTCAGACGTATGCCGTGGTTCTGAGTCGTCCCGCCTGGCTGTGGGGGGCGGAGATGGGGGCAAACGAGCATCAGGTGTGCATCGGGAATGAGGCGGTGTGGGGGAAAGAGAGCGTGGACGGCGAAGAGGCTCTCCTGGGCATGGATCTCGTCAGGCTGGCTCTGGAGAGGGCAGACACCGCTCAGCGGGCTGTAGACGTCATAACAGATCTGCTGAAGAACCACGGCCAGGGAGGGAACTGTATGGAGGACCAGTGTGGATTCAACTACCACAACAGCTTCCTCATATCAGACCGCACGGAGGCCTGGGTGCTGGAGACTGCTGGGAAATACTGGGCGGCAGAGAGAGTGGAGGcgGGCTATCGAAACATCTCCAACGAGTACTCCATCACTACTAAGATCGATAGGGAGCACCCGGAGTTGAGGACGTATGCGGAGAAGCAGCGCTGGTGGAACGGAAAGACTGAGTTCAACTTTGCTAAGGTTTACTCCTACTCCAACACAGCCCGGATCGAGGCCGCAGAGGGACGCTACTGTGAGGGACGCAAGCTCCTGCAGAAGAGCTCAGGCCACATCACAGCGGAGAAGATGATGGAGATTTTGAGGGATAAGGAAAGCGGTATCAACATGGAGGGGATGTTCATGACCACAGGAAGTATGGTGTCTGTAGTCCCGAAAGACCAGAATTTACCCGGCGTCCACTTCTTCACGGCTACTCCAGACCCCGAGCGGTCCGTCTTCAAGCCGTTTGTTTTCGTAGTGGATATAAAGCAGCTGAAGCACACGTGTTCTCCGTGTTTTGGAGACGAGGATCCGGTGAAGAAGAAACCTCGTTTCCAGAGCAAACCCAACCGCAAACACCCCCTGTTTCTGAAGCACGAGGTGGCCGCCGCCGTCATCGACAGCAACGGGGAGAGAGGACAGAAGATCTTGGAGGAATTGAGAGCGCTGGAGACGCAGAAGTTGGCAGAGATGGAGAAATATCTAACGGCGGGGATTGAAGATGCTACGCTGCTGGTTCATCTCTTCACAGACACCGCTGAAGAGGAGTTCAGGGTTTACAGCAACGCCTGAGGCTTAGGTCACGGGCTGTTGGGCGTTTCTTCAACGGAGGGCACTTTTGAACCCTTAGTTTCACTAAATTGCAGATTGATTGGCGTggaagcataataaaaatattcagctCACGTGTGATTACATCATATGCCTTGAAATATAATTCGCTAATTGTATTCAGTGCTGAACTCTAAAAGTCCTTTTTTATCCAATATAATCATAATTCATGTCATTCCTCGTGGtcttataatattataatgattctAATTATAATAAGGTCCCATTTAGtgcattaatgtaatttattgtttgCATTGTTAGTAAATACATTGTTTGTAAGTTCATGacagcattaaattaaaatgggtCTTTTTATTCAGCATACGTAGTAAACCTATGTTAACAAATTGTAAAGTCTTAATAAATTTTGTGCATCTGAGAACTAAAATCTATATagaaacatcttaaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaacgaatGCATGGTTAACAAAATCCAAGACAGCTTCATGTTTAAAGACCGCTCAAGCCCTCAGACGCCAAAGTTCCCAAAGTTGAATAAACAGCCCTGTACTGCCATCAAGAGCTAGCTGGAGATGTCCTATTATTTAGACACTTACTGTATGTTTGGATATCATTTGAGATGATTGTACAGAAGGCTGCATGCATTTGAACCTGTTAATGGTTTAGTCCAGGGGTCATCAAGcttcaacacacctgcctggaaggTTCAAGTATACAGAGCAACACCGTGATTaactgcttcaggtgtgtttgattaggaagGGAGCTAAACTCTTCAGAAACACCGCCCTTGGTGACCCCTGGTTTAGTCTCTAATTGTTCTCATTACTGAAATGTACAGTTTATGTCATGGATTGTTGTGTCATGAAATCCGGTGTCAATTCCAGTCATTTTAATGTCTCTATGATGCACAGAAATCCTATGCACTCAACAAACACTTAAAGCTAGCTAATTTATCactttaagaaatgtttcattttgtgaaCAGTTCACCGCTCTAGACCTATTGTATTGTCGAAGCaccttttgattttattaaactaTTCAGTCTTTTGGGGGGTGAGTCTATCAGCGTTACACACCAATATGTTCCCTCTTTGCAAAAACACTCCAAATCTGTCAGATAGCGAGGGCATGTCCTGTCCCTCACATTTTCAGGATTCAGGTCTGGGATGTGGCTGTGTCCTTACGTAACCTCAGTCTCGTTTCCAGCTGAATAAACAGCCTCAAAGTGTGACGTCCCCCCCATCGTTGCTTCGCTGTGGTTATGGTGTTCCTTTGGTTACgtgcagtgttgtttttttaggcCATAACACATTTTCCCACACGCTTTTGGGAGACGTATAATGCGTTTCTGCAAAATGTAGCTAAGTTTAGATGTTTTTCTTACCACCATCTCGGCCCAGACATGTAAAGAATATGGGAGATTGTTGACACATATACTACATAAACAGTACTTTCCAAAAA
>XM_043249289.1
ATCAGATAGCCCTGCATGCGGATTTCTGTCAAGTGCGGCCAGTTTTGTTTATGgagaaaggaaaaggaaagtAAACACATGTTTAATTTCATCGAACAGAGAAGCGATTCTCGTCACACCTGCTATTTTTATATACGCTGAGTCGGCCAAGTTGTTTAGGTTAAGATGTACCCGACCTCCTGCGACACATTTGTAGCCCTGCCTCCATCCACGGAGGGTCAGCGGATAGTCTTCGGGAAGAACTCCGACAGACCCTGCGATGAAGTTCAAGAGGTGGTCCACTTCCCCGCCAAAACGCATGAACCGGACGAGAAAGTGGAGtgtacatacatacagataGAGCAGGTGGCTCAGACGTATGCCGTGGTTCTGAGTCGTCCCGCCTGGCTGTGGGGGGCGGAGATGGGGGCAAACGAGCATCAGGTGTGCATCGGGAATGAGGCGGTGTGGGGGAAAGAGAGCGTGGACGGCGAAGAGGCTCTCCTGGGCATGGATCTCGTCAGGCTGGCTCTGGAGAGGGCAGACACCGCTCAGCGGGCTGTAGACGTCATAACAGATCTGCTGAAGAACCACGGCCAGGGAGGGAACTGTATGGAGGACCAGTGTGGATTCAACTACCACAACAGCTTCCTCATATCAGACCGCACGGAGGCCTGGGTGCTGGAGACTGCTGGGAAATACTGGGCGGCAGAGAGAGTGGAGGcgGGCTATCGAAACATCTCCAACGAGTACTCCATCACTACTAAGATCGATAGGGAGCACCCGGAGTTGAGGACGTATGCGGAGAAGCAGCGCTGGTGGAACGGAAAGACTGAGTTCAACTTTGCTAAGGTTTACTCCTACTCCAACACAGCCCGGATCGAGGCCGCAGAGGGACGCTACTGTGAGGGACGCAAGCTCCTGCAGAAGAGCTCAGGCCACATCACAGCGGAGAAGATGATGGAGATTTTGAGGGATAAGGAAAGCGGTATCAACATGGAGGGGATGTTCATGACCACAGGAAGTATGGTGTCTGTAGTCCCGAAAGACCAGAATTTACCCGGCGTCCACTTCTTCACGGCTACTCCAGACCCCGAGCGGTCCGTCTTCAAGCCGTTTGTTTTCGTAGTGGATATAAAGCAGCTGAAGCACACGTGTTCTCCGTGTTTTGGAGACGAGGATCCGGTGAAGAAGAAACCTCGTTTCCAGAGCAAACCCAACCGCAAACACCCCCTGTTTCTGAAGCACGAGGTGGCCGCCGCCGTCATCGACAGCAACGGGGAGAGAGGACAGAAGATCTTGGAGGAATTGAGAGCGCTGGAGACGCAGAAGTTGGCAGAGATGGAGAAATATCTAACGGCGGGGATTGAAGATGCTACGCTGCTGGTTCATCTCTTCACAGACACCGCTGAAGAGGAGTTCAGGGTTTACAGCAACGCCTGAGGCTTAGGTCACGGGCTGTTGGGCGTTTCTTCAACGGAGGGCACTTTTGAACCCTTAGTTTCACTAAATTGCAGATTGATTGGCGTggaagcataataaaaatattcagctCACGTGTGATTACATCATATGCCTTGAAATATAATTCGCTAATTGTATTCAGTGCTGAACTCTAAAAGTCCTTTTTTATCCAATATAATCATAATTCATGTCATTCCTCGTGGtcttataatattataatgattctAATTATAATAAGGTCCCATTTAGtgcattaatgtaatttattgtttgCATTGTTAGTAAATACATTGTTTGTAAGTTCATGacagcattaaattaaaatgggtCTTTTTATTCAGCATACGTAGTAAACCTATGTTAACAAATTGTAAAGTCTTAATAAATTTTGTGCATCTGAGAACTAAAATCTATATagaaacatcttaaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaacgaatGCATGGTTAACAAAATCCAAGACAGCTTCATGTTTAAAGACCGCTCAAGCCCTCAGACGCCAAAGTTCCCAAAGTTGAATAAACAGCCCTGTACTGCCATCAAGAGCTAGCTGGAGATGTCCTATTATTTAGACACTTACTGTATGTTTGGATATCATTTGAGATGATTGTACAGAAGGCTGCATGCATTTGAACCTGTTAATGGTTTAGTCCAGGGGTCATCAAGcttcaacacacctgcctggaaggTTCAAGTATACAGAGCAACACCGTGATTaactgcttcaggtgtgtttgattaggaagGGAGCTAAACTCTTCAGAAACACCGCCCTTGGTGACCCCTGGTTTAGTCTCTAATTGTTCTCATTACTGAAATGTACAGTTTATGTCATGGATTGTTGTGTCATGAAATCCGGTGTCAATTCCAGTCATTTTAATGTCTCTATGATGCACAGAAATCCTATGCACTCAACAAACACTTAAAGCTAGCTAATTTATCactttaagaaatgtttcattttgtgaaCAGTTCACCGCTCTAGACCTATTGTATTGTCGAAGCaccttttgattttattaaactaTTCAGTCTTTTGGGGGGTGAGTCTATCAGCGTTACACACCAATATGTTCCCTCTTTGCAAAAACACTCCAAATCTGTCAGATAGCGAGGGCATGTCCTGTCCCTCACATTTTCAGGATTCAGGTCTGGGATGTGGCTGTGTCCTTACGTAACCTCAGTCTCGTTTCCAGCTGAATAAACAGCCTCAAAGTGTGACGTCCCCCCCATCGTTGCTTCGCTGTGGTTATGGTGTTCCTTTGGTTACgtgcagtgttgtttttttaggcCATAACACATTTTCCCACACGCTTTTGGGAGACGTATAATGCGTTTCTGCAAAATGTAGCTAAGTTTAGATGTTTTTCTTACCACCATCTCGGCCCAGACATGTAAAGAATATGGGAGATTGTTGACACATATACTACATAAACAGTACTTTCCAAAAA
>XM_043249290.1
TGAATCAGATAGCCCTGCATGCGGATTTCTGTCAAGTGCGGCCAGTTTTGTTTATGgagaaaggaaaaggaaagtAAACACATGTTTAATTTCATCGAACAGAGAAGCGATTCTCGTCACACCTGCTATTTTTATATACGCTGAGTCGGCCAAGGTTAAGATGTACCCGACCTCCTGCGACACATTTGTAGCCCTGCCTCCATCCACGGAGGGTCAGCGGATAGTCTTCGGGAAGAACTCCGACAGACCCTGCGATGAAGTTCAAGAGGTGGTCCACTTCCCCGCCAAAACGCATGAACCGGACGAGAAAGTGGAGtgtacatacatacagataGAGCAGGTGGCTCAGACGTATGCCGTGGTTCTGAGTCGTCCCGCCTGGCTGTGGGGGGCGGAGATGGGGGCAAACGAGCATCAGGTGTGCATCGGGAATGAGGCGGTGTGGGGGAAAGAGAGCGTGGACGGCGAAGAGGCTCTCCTGGGCATGGATCTCGTCAGGCTGGCTCTGGAGAGGGCAGACACCGCTCAGCGGGCTGTAGACGTCATAACAGATCTGCTGAAGAACCACGGCCAGGGAGGGAACTGTATGGAGGACCAGTGTGGATTCAACTACCACAACAGCTTCCTCATATCAGACCGCACGGAGGCCTGGGTGCTGGAGACTGCTGGGAAATACTGGGCGGCAGAGAGAGTGGAGGcgGGCTATCGAAACATCTCCAACGAGTACTCCATCACTACTAAGATCGATAGGGAGCACCCGGAGTTGAGGACGTATGCGGAGAAGCAGCGCTGGTGGAACGGAAAGACTGAGTTCAACTTTGCTAAGGTTTACTCCTACTCCAACACAGCCCGGATCGAGGCCGCAGAGGGACGCTACTGTGAGGGACGCAAGCTCCTGCAGAAGAGCTCAGGCCACATCACAGCGGAGAAGATGATGGAGATTTTGAGGGATAAGGAAAGCGGTATCAACATGGAGGGGATGTTCATGACCACAGGAAGTATGGTGTCTGTAGTCCCGAAAGACCAGAATTTACCCGGCGTCCACTTCTTCACGGCTACTCCAGACCCCGAGCGGTCCGTCTTCAAGCCGTTTGTTTTCGTAGTGGATATAAAGCAGCTGAAGCACACGTGTTCTCCGTGTTTTGGAGACGAGGATCCGGTGAAGAAGAAACCTCGTTTCCAGAGCAAACCCAACCGCAAACACCCCCTGTTTCTGAAGCACGAGGTGGCCGCCGCCGTCATCGACAGCAACGGGGTCAGCCAACGTCTTTTAATACCGCCAGCATTTGTTAAGTAAGCTCGCGCGCAGAGAGGAGAGAGGACAGAAGATCTTGGAGGAATTGAGAGCGCTGGAGACGCAGAAGTTGGCAGAGATGGAGAAATATCTAACGGCGGGGATTGAAGATGCTACGCTGCTGGTTCATCTCTTCACAGACACCGCTGAAGAGGAG
>XR_006251811.1
TGAATCAGATAGCCCTGCATGCGGATTTCTGTCAAGTGCGGCCAGTTTTGTTTATGgagaaaggaaaaggaaagtAAACACATGTTTAATTTCATCGAACAGAGAAGCGATTCTCGTCACACCTGCTATTTTTATATACGCTGAGTCGGCCAAGGTTAAGATGTACCCGACCTCCTGCGACACATTTGTAGCCCTGCCTCCATCCACGGAGGGTCAGCGGATAGTCTTCGGGAAGAACTCCGACAGACCCTGCGATGAAGTTCAAGAGGTGGTCCACTTCCCCGCCAAAACGCATGAACCGGACGAGAAAGTGGAGtgtacatacatacagataGAGCAGGTGGCTCAGACGTATGCCGTGGTTCTGAGTCGTCCCGCCTGGCTGTGGGGGGCGGAGATGGGGGCAAACGAGCATCAGGTGTGCATCGGGAATGAGGCGGTGTGGGGGAAAGAGAGCGTGGACGGCGAAGAGGCTCTCCTGGGCATGGATCTCGTCAGGCTGGCTCTGGAGAGGGCAGACACCGCTCAGCGGGCTGTAGACGTCATAACAGATCTGCTGAAGAACCACGGCCAGGGAGGGAACTGTATGGAGGACCAGTGTGGATTCAACTACCACAACAGCTTCCTCATATCAGACCGCACGGAGGCCTGGGTGCTGGAGACTGCTGGGAAATACTGGGCGGCAGAGAGAGTGGAGGcgGGCTATCGAAACATCTCCAACGAGTACTCCATCACTACTAAGATCGATAGGGAGCACCCGGAGTTGAGGACGTATGCGGAGAAGCAGCGCTGGTGGAACGGAAAGACTGAGTTCAACTTTGCTAAGGTTTACTCCTACTCCAACACAGCCCGGATCGAGGCCGCAGAGGGACGCTACTGTGAGGGACGCAAGCTCCTGCAGAAGAGCTCAGGCCACATCACAGCGGAGAAGATGATGGAGATTTTGAGGGATAAGGAAAGCGGTATCAACATGGAGGGGATGTTCATGACCACAGGAAGTATGGTGTCTGTAGTCCCGAAAGACCAGAATTTACCCGGCGTCCACTTCTTCACGGCTACTCCAGACCCCGAGCGGTCCGTCTTCAAGCCGTTTGTTTTCGTAGTGGATATAAAGCAGCTGAAGCACACGTGTTCTCCGTGTTTTGGAGACGAGGATCCGGTGAAGAAGAAACCTCGTTTCCAGAGCAAACCCAACCGCAAACACCCCCTGTTTCTGAAGCACGAGGTGGCCGCCGCCGTCATCGACAGCAACGGGGTCAGCCAACGTCTTTTAATACCGCCAGCATTTGTTAAGTAAGCTCGCGCGCAGAGAGGTCAGTCAAGGTCACTAGCGTGGAAATCTTTAAAGGAGAGAGGACAGAAGATCTTGGAGGAATTGAGAGCGCTGGAGACGCAGAAGTTGGCAGAGATGGAGAAATATCTAACGGCGGGGATTGAAGATGCTACGCTGCTGGTTCATCTCTTCACAGACACCGCTGAAGAGGAGTTC

Function

symbol description
scrn3 Predicted to enable cysteine-type exopeptidase activity and dipeptidase activity. Predicted to act upstream of or within proteolysis. Orthologous to human SCRN3 (secernin 3).

NR:

description
PREDICTED: secernin-3

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016805 dipeptidase activity molecular_function

KEGG:

id description
K14358 SCRN; secernin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249288.1 False 2959 mRNA 0.45 8 4120527 4127013
XM_043249289.1 True 2964 mRNA 0.45 8 4120530 4127013
XM_043249290.1 False 1451 mRNA 0.54 8 4120527 4125447
XR_006251811.1 False 1489 transcript 0.54 8 4120527 4125450

Neighbor

gene id symbol gene type direction distance location
sp9 sp9,LOC107657367,LOC107742954,LOC107600696,LOC107588267,LOC107739462 coding upstream 8302 4109650 ~ 4112225 (+)
zak zak,LOC107742952,LOC107671274,LOC107718456,LOC107657350,LOC107600726,LOC107588248,LOC105908008,LOC107602297 coding upstream 139316 3948018 ~ 3981211 (+)
LOC122351193 rapgef4,LOC107742951,LOC107671325 coding upstream 174919 3925891 ~ 3945608 (+)
LOC122351330 LOC107571834,LOC107657380,LOC107716910 coding upstream 209707 3906741 ~ 3910820 (+)
stx19 stx19,LOC107664001,LOC107749033,LOC107728237 coding upstream 352990 3760833 ~ 3767537 (+)
hoxd13a NA coding downstream 254511 4381524 ~ 4382885 (+)
hoxd12a hoxd12a,LOC107600749,LOC107716915,LOC107657365,LOC107725821 coding downstream 258426 4385439 ~ 4387003 (+)
hoxd11a hoxd11a,LOC107657363,LOC107716914,LOC107725820,LOC107671289,LOC107588263,LOC107600752 coding downstream 262635 4389648 ~ 4392011 (+)
hoxd10a hoxd10,hoxd10a,LOC107657362,LOC107671319,LOC107588261,LOC107579206 coding downstream 267703 4394716 ~ 4397578 (+)
hoxd9a hoxd9a,LOC107657361,LOC107588260,LOC107600753,LOC107725811 coding downstream 271710 4398723 ~ 4401072 (+)
G67606 NA non-coding upstream 55566 4064637 ~ 4064961 (+)
G67604 NA non-coding upstream 81705 4038596 ~ 4038822 (+)
G67562 LOC107588232,LOC107742953,LOC107671312,LOC107657349 non-coding upstream 88707 3946534 ~ 4031820 (+)
G67448 NA non-coding upstream 290755 3828823 ~ 3829772 (+)
LOC122351161 NA non-coding upstream 473913 3642961 ~ 3646614 (+)
G67637 NA non-coding downstream 29643 4156656 ~ 4157963 (+)
G67641 NA non-coding downstream 35343 4162356 ~ 4165072 (+)
G67657 NA non-coding downstream 80677 4207690 ~ 4208541 (+)
G67680 NA non-coding downstream 224688 4351701 ~ 4404210 (+)
G67684 NA non-coding downstream 227992 4355005 ~ 4356813 (+)
cdca7a LOC107718452,LOC107671286,LOC107588247,LOC107742973,LOC107657370,LOC107600694 other upstream 134565 3981346 ~ 3985962 (+)
G67566 LOC107742952,LOC107718452,LOC107671286,LOC107715667 other upstream 136945 3948036 ~ 3983582 (+)
LOC122352174 rbm45,LOC107716918,LOC107752596 other upstream 197649 3913638 ~ 3922878 (+)
LOC122351398 dnajc15,LOC107549910 other upstream 840475 3262607 ~ 3280052 (+)
LOC122351419 polr2e,polr2eb,LOC107592678,LOC107669821,LOC107599482 other upstream 923909 3194773 ~ 3196618 (+)
G67630 NA other downstream 14041 4141054 ~ 4222171 (+)
hoxd4a hoxd4a,hoxd4,LOC107600706,LOC107671320 other downstream 282882 4409895 ~ 4413160 (+)
G67717 LOC107716922,LOC107657385,LOC107725823,LOC107671308 other downstream 396273 4523286 ~ 4562602 (+)
rbm45 rbm45,LOC107716918,LOC107752596 other downstream 582040 4709053 ~ 4717233 (+)
c9h2orf76 zgc:101851,cunh2orf76,LOC107670315,LOC107747242,LOC107560816,LOC107752580,LOC107549781,LOC107689495 other downstream 888457 5015470 ~ 5018338 (+)

Expression


Co-expression Network