atf2 (atf2,LOC107671311,LOC107739459,LOC107657392,LOC107742976,LOC107600703)


Basic Information

Item Value
gene id atf2
gene name atf2,LOC107671311,LOC107739459,LOC107657392,LOC107742976,LOC107600703
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4197917 ~ 4218494 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249304.1
GGAGTTTCTAACTCTCGCGAGAGGTGCTATAAGTGGGCTTTGGCTCTTCAGGGTTCAGCCTGCGGGTGGCAGACTGAAGCTGTGAATATGAGTGATGATAAACCGTTTCTTTGCACTGCTCCTGGCTGCGGACAGCGATTCACAAATGAAGACCACCTGGCAGTGCATAAACACAAGCATGAGATGACCCTGAGATTTGGTCCAGCACGCAATGACAGTGTCATCATCGCTGACCAGACACCGACACCGACCCGCTTCCTGAAGAACTGCGAAGAGGTCGGGCTGTTTAACGAGCTCACCAGCCCGTTCGAGCATGACTTTAAAAAGGCCACGGAAGATGATGTTAAAAAGTTGCCTCTGGACTTGTCTCCTCTTGCGACTCCTGTTGTTCGAAACAAAATAGAGGAGCACACACCCATTGCGTCCCACCGAGACAGTCCCCTTCCTCACCCCGAGTCAACAACCGCTGACGACAAGGAGGTTTCTTTGCAGCCGGCCTCTCTGCCTCCATCCACTATAGTCCGTCCTGCCTCCCTCCAAGTCCCCAGTGTACTACTGGCCAGCAATGAGGCTGGTGTTGTTATTCAGCAAGCTCTCCCATCTCCGACATCTAGCTCTGTTATAACCCAGGTCCCATCCTCTAGTAGACCGATAGTTCCGGTGTCCGGCACGTTTCCGGTTCTGCTCCAGCTGCCTAACGGTCAGACGATGCCAGTCGCCATTCCAGCCACCATCGCCAGCTCTAGCGTACACATACCCACTGCCATCCCTctgGTCAGACCAGTCACCGTAGTGCCTAGTGTCCCTGGAATCCCCGGCCCCTCCTCTCCACAGCCTGTCCAATCAGAAGCCAAGATGAAGCTGAAGGCTGCACTCAGTCAGCAGAGCCCTCAGGTAACCAACGGCGATGCAGGTGACATCCAGAGCAGCTCGGCCAGCGAGACTCCGCCCCCGGCCCCGCCTCCAGTCGAGGAGCCCCGCCCACAGTCACTACAGCAGCCGGCCACATCCACGACAGAAACTCCTGTGTCTCCGGCCCCTCCGGCCCAGCACACCACCAGCACAGGCGGGCGGCGGCGGAGAACCACCAGCGAGGACCCCGACGAGAAGAGGCGGAAGTTTCTGGAGAGGAACCGAGCGGCCGCGTCTCGCTGCAGGCAGAAGAGGAAAGTCTGGGTGCAGAATCTGGAGAAGAAAGCGGAGGACTTGAGCAGCGTGAACGGACAGCTACagAGCGAGGTGACTCTTCTGCGAAGCGAGGTGGCCCAGCTGAAGCAGCTTTTACTGGCTCACAAAGACTGTCCCGTGACGCTCCTGCAGAAGAAATCGGGATACCATCAGCTGGATAAGGAGGACAGCTGCGGGGAGATGTCTGTTCCCAGCAGCCCCCAGAACGAGGCCATCCAGCACAGCTCCATCAGCACATCCAACGGCGTCAGCTCCTCCACAGCAGCCACGGCGGCCCTCGCGTCCGGCCCCGCTCTGGGGCCCGCCGCAGACCACAGCACAGAGGAGGAAGACGCCTCTTCCTCTCATGCCCAGTCTTCAGGAAGCTGATCAGGCCTCTGATTGGTCGCTTCGATTCCCGGCAGCCATGTTTGAAAGGAGGAGGGCGAGAGATGAGACGCTTCAGTCTCGTCTCACCTCTGTTTTCATTTCGAGCTCTTTTCGATCCAGCGCATTTTTACAAAGAGCTGTGGGGGGGGCACTTGAGAGGTTATGCAGAAATCGTATGATTGTTTCATGGTTTTTCCATTTGTGGTGTGTTTATTGAGGATCGAGACGGAGCGGTTCACAACAGTCCTGTGTCCGGATTCATAGACTTACTGGAGCGCTATCCAAGGAAGAATCGGCcactttataatttatttgccttttatattttgcacatgAAAGGAGTGAACGGTGTCTGTTTTAGTTTTCCAGCTGATTTTTAGCAGtagctttaaaacaaaatctgatCGTCGGTCTTCTAGAAATAGTGAGGTGTCGTTGCGTGAATGCTTCATACGGATCCTGGCATGTTAATGAAGATTTTCTGACATGAGTGATTGTTCATTGGGCAGTGATTGTACGAGTGCATTATTCTTTTCAAATGCTTACTTCGATATGTGCAGGTTATTGAAATTACAACAACAAATTTCTTTTACAGTCTAATTACAAAGACGTTTTAGGTAAATTAGTGAAATAGACTTGCCTGAGAGCTTATTTTGATAAGAacttaatgctttttttataagcaattttgtttttttttcttgcttaacTTACAAAGTAGCTGACTTTGTATTTGTTGTGTCATTGAGAAGATCATTAGTTCATTCACTCTGATTGTCTTTCTGATTACAGTGTAATTAAGGAAGCATTGTATATGCCATTATGATGAAATCATTGTATGTGATCTCTACTGGTACTATGTTTGTCTTAGgatcatgacaaaaaaaaaaaacaaaaaaaacgaaacgaaCCTTTAAACAAGGCTTTTTCTGGCCAAGCTGTGGAACTGTTTTCAGCAATTGCGTCTTTAGCATTAAACTCGACAAAACTCAACCGGAGCTGCTCTTCAAAACAACGACGGATGTAAAACTCTACTGTCTTTTTAAGTTACGCTTAGTGACGGTTGCTAAGTAAGAAAAACAGATGAAGTCTTTGATCATCATCCTCTTCTCTCTTTAAATTCTATTGGCTTACTACTGTGTAGTTCTACAAGACTTTGCTGCATTTCGTTCTGCTTTTAAGTCTACTTGATTTTGGTTTCAAAGGTAAATTTGTACGACGGTTGTTCTGTGCTTTACCTGCATGACTGAATTCTCTAAGAGAATTAGACCAGTGTTTCAACCGTGTCTCCGTTGCTGTCGAACGTCTCGTTACTCTTAGATTTTCAGCCAGGAATTGGCAGCTTTACAATGGGGGTTTTGTTCTTTATATTTACTAGGTCCactttggaggaaaaaaaaaaaaaaaaaaaggatgtgatGATTATTGTGCTGGCGGTCAACTTGTAACTTGTGAAAgttatgtataaattataataaattaataaaacgttgtaataaatcttttaaatagcTACTTAAA
>XM_043249305.1
AGCGGAGTTTCTAACTCTCGCGAGAGGTGCTATAAGTGGGCTTTGGCTCTTCAGGGTTCAGCCTGCGGGTGGCAGACTGAAGCTGTGAATATGAGTGATGATAAACCGTTTCTTTGCACTGCTCCTGGCTGCGGACAGCGATTCACAAATGAAGACCACCTGGCAGTGCATAAACACAAGCATGAGATGACCCTGAGATTTGGTCCAGCACGCAATGACAGTGTCATCATCGCTGACCAGACACCGACACCGACCCGCTTCCTGAAGAACTGCGAAGAGGTCGGGCTGTTTAACGAGCTCACCAGCCCGTTCGAGCATGACTTTAAAAAGGCCACGGAAGATGATGTTAAAAAGTTGCCTCTGGACTTGTCTCCTCTTGCGACTCCTGTTGTTCGAAACAAAATAGAGGAGCACACACCCATTGCGTCCCACCGAGACAGTCCCCTTCCTCACCCCGAGTCAACAACCGCTGACGACAAGGAGGTTTCTTTGCAGCCGGCCTCTCTGCCTCCATCCACTATAGTCCGTCCTGCCTCCCTCCAAGTCCCCAGTGTACTACTGGCCAGCAATGAGGCTGGTGTTGTTATTCAGCAAGCTCTCCCATCTCCGACATCTAGCTCTGTTATAACCCAGGTCCCATCCTCTAGTAGACCGATAGTTCCGGTGTCCGGCACGTTTCCGGTTCTGCTCCAGCTGCCTAACGGTCAGACGATGCCAGTCGCCATTCCAGCCACCATCGCCAGCTCTAGCGTACACATACCCACTGCCATCCCTAAGCTGAAGGCTGCACTCAGTCAGCAGAGCCCTCAGGTAACCAACGGCGATGCAGGTGACATCCAGAGCAGCTCGGCCAGCGAGACTCCGCCCCCGGCCCCGCCTCCAGTCGAGGAGCCCCGCCCACAGTCACTACAGCAGCCGGCCACATCCACGACAGAAACTCCTGTGTCTCCGGCCCCTCCGGCCCAGCACACCACCAGCACAGGCGGGCGGCGGCGGAGAACCACCAGCGAGGACCCCGACGAGAAGAGGCGGAAGTTTCTGGAGAGGAACCGAGCGGCCGCGTCTCGCTGCAGGCAGAAGAGGAAAGTCTGGGTGCAGAATCTGGAGAAGAAAGCGGAGGACTTGAGCAGCGTGAACGGACAGCTACagAGCGAGGTGACTCTTCTGCGAAGCGAGGTGGCCCAGCTGAAGCAGCTTTTACTGGCTCACAAAGACTGTCCCGTGACGCTCCTGCAGAAGAAATCGGGATACCATCAGCTGGATAAGGAGGACAGCTGCGGGGAGATGTCTGTTCCCAGCAGCCCCCAGAACGAGGCCATCCAGCACAGCTCCATCAGCACATCCAACGGCGTCAGCTCCTCCACAGCAGCCACGGCGGCCCTCGCGTCCGGCCCCGCTCTGGGGCCCGCCGCAGACCACAGCACAGAGGAGGAAGACGCCTCTTCCTCTCATGCCCAGTCTTCAGGAAGCTGATCAGGCCTCTGATTGGTCGCTTCGATTCCCGGCAGCCATGTTTGAAAGGAGGAGGGCGAGAGATGAGACGCTTCAGTCTCGTCTCACCTCTGTTTTCATTTCGAGCTCTTTTCGATCCAGCGCATTTTTACAAAGAGCTGTGGGGGGGGCACTTGAGAGGTTATGCAGAAATCGTATGATTGTTTCATGGTTTTTCCATTTGTGGTGTGTTTATTGAGGATCGAGACGGAGCGGTTCACAACAGTCCTGTGTCCGGATTCATAGACTTACTGGAGCGCTATCCAAGGAAGAATCGGCcactttataatttatttgccttttatattttgcacatgAAAGGAGTGAACGGTGTCTGTTTTAGTTTTCCAGCTGATTTTTAGCAGtagctttaaaacaaaatctgatCGTCGGTCTTCTAGAAATAGTGAGGTGTCGTTGCGTGAATGCTTCATACGGATCCTGGCATGTTAATGAAGATTTTCTGACATGAGTGATTGTTCATTGGGCAGTGATTGTACGAGTGCATTATTCTTTTCAAATGCTTACTTCGATATGTGCAGGTTATTGAAATTACAACAACAAATTTCTTTTACAGTCTAATTACAAAGACGTTTTAGGTAAATTAGTGAAATAGACTTGCCTGAGAGCTTATTTTGATAAGAacttaatgctttttttataagcaattttgtttttttttcttgcttaacTTACAAAGTAGCTGACTTTGTATTTGTTGTGTCATTGAGAAGATCATTAGTTCATTCACTCTGATTGTCTTTCTGATTACAGTGTAATTAAGGAAGCATTGTATATGCCATTATGATGAAATCATTGTATGTGATCTCTACTGGTACTATGTTTGTCTTAGgatcatgacaaaaaaaaaaaacaaaaaaaacgaaacgaaCCTTTAAACAAGGCTTTTTCTGGCCAAGCTGTGGAACTGTTTTCAGCAATTGCGTCTTTAGCATTAAACTCGACAAAACTCAACCGGAGCTGCTCTTCAAAACAACGACGGATGTAAAACTCTACTGTCTTTTTAAGTTACGCTTAGTGACGGTTGCTAAGTAAGAAAAACAGATGAAGTCTTTGATCATCATCCTCTTCTCTCTTTAAATTCTATTGGCTTACTACTGTGTAGTTCTACAAGACTTTGCTGCATTTCGTTCTGCTTTTAAGTCTACTTGATTTTGGTTTCAAAGGTAAATTTGTACGACGGTTGTTCTGTGCTTTACCTGCATGACTGAATTCTCTAAGAGAATTAGACCAGTGTTTCAACCGTGTCTCCGTTGCTGTCGAACGTCTCGTTACTCTTAGATTTTCAGCCAGGAATTGGCAGCTTTACAATGGGGGTTTTGTTCTTTATATTTACTAGGTCCactttggaggaaaaaaaaaaaaaaaaaaaggatgtgatGATTATTGTGCTGGCGGTCAACTTGTAACTTGTGAAAgttatgtataaattataataaattaataaaacgttgtaataaatcttttaaatagcTACTTAAA
>XM_043249307.1
TAGCGGAGTTTCTAACTCTCGCGAGAGGTGCTATAAGTGGGCTTTGGCTCTTCAGGGTTCAGCCTGCGGGTGGCAGACTGAAGCTGTGAATATGAGTGATGATAAACCGTTTCTTTGCACTGCTCCTGGCTGCGGACAGCGATTCACAAATGAAGACCACCTGGCAGTGCATAAACACAAGCATGAGATGACCCTGAGATTTGGTCCAGCACGCAATGACAGTGTCATCATCGCTGACCAGACACCGACACCGACCCGCTTCCTGAAGAACTGCGAAGAGGTCGGGCTGTTTAACGAGCTCACCAGCCCGTTCGAGCATGACTTTAAAAAGGCCACGGAAGATGATGTTAAAAAGTTGCCTCTGGACTTGTCTCCTCTTGCGACTCCTGTTGTTCGAAACAAAATAGAGGAGCACACACCCATTGCGTCCCACCGAGACAGTCCCCTTCCTCACCCCGAGTCAACAACCGCTGACGACAAGGAGGTTTCTTTGCAGCCGGCCTCTCTGCCTCCATCCACTATAGTCCGTCCTGCCTCCCTCCAAGTCCCCAGTGTACTACTGGCCAGCAATGAGGCTGGTGTTGTTATTCAGCAAGCTCTCCCATCTCCGACATCTAGCTCTGTTATAACCCAGGTCCCATCCTCTAGTAGACCGATAGTTCCGGTGTCCGGCACGTTTCCGGTTCTGCTCCAGCTGCCTAACGGTCAGACGATGCCAGTCGCCATTCCAGCCACCATCGCCAGCTCTAGCGTACACATACCCACTGCCATCCCTctgGTCAGACCAGTCACCGTAGTGCCTAGTGTCCCTGGAATCCCCGGCCCCTCCTCTCCACAGCCTGTCCAATCAGAAGCCAAGATGAAGCTGAAGGCTGCACTCAGTCAGCAGAGCCCTCAGGTAACCAACGGCGATGCAGGTGACATCCAGAGCAGCTCGGCCAGCGAGACTCCGCCCCCGGCCCCGCCTCCAGTCGAGGAGCCCCGCCCACAGTCACTACAGCAGCCGGCCACATCCACGACAGAAACTCCTGTGTCTCCGGCCCCTCCGGCCCAGCACACCACCAGCACAGGCGGGCGGCGGCGGAGAACCACCAGCGAGGACCCCGACGAGAAGAGGCGGAAGTTTCTGGAGAGGAACCGAGCGGCCGCGTCTCGCTGCAGGCAGAAGAGGAAAGTCTGGGTGCAGAATCTGGAGAAGAAAGCGGAGGACTTGAGCAGCGTGAACGGACAGCTACagCCACGGCGTGATTGTCGGAGTCTCCTGCATCGATATGGCCCTGTCAATAAAGACGTTTCCTCCAGATGTCATCGGCACACAAGCGTGTCGTCTGTTCTGTCGGCGCTGCCCTGGAACTCTCTCAGGGAAAGCCGTCTCTTTCTCAACCCCCGTTTTGTAGCAGGCAATTAGGATCTGCCACTGACAAGTTCGCAACAGTTCACGTAACCGTTGTCTCTGCTGATAACGGCGAGTGCGGCTCGGCGCCGGCACGTTCCAGACAATTTAATGAGATGTGCCACTGTTTATTTGCGCGCTGTCTTCTTTATTTGTCCGTTTAATCAAAGcgcgggtttttttttttttggcgacGGGGTTGGGGAAGGGCGATTAATTTGTGGGTTATATGAAGGAATAAACTAACACGAAGCAGATGGAGAAGCGAAGAAGGGTGTTGGGTGTAGAACAGAATGCTCGGGACTCTGGAAACGAGCGTGACGGTATGTTTCTTCGGAGGGACGGCGTTTAATACGAGCGCATTTATCAGCGCTGATGGGCTGCTGTAATTGTCCCTCTCTGCCCCGTTGGCCCAGCTGATCGGAGCGTAGAGCTCTAATGATGCTCAATTACGTTAACATCATCCTTAACTGGCTTTTTAACGAGGTGTCAGGGTTTGCCGACCAGCGCACGGCAGCACTCGAGCCAAACATCCCCTGCGCTGCCTTTATGGATGCAGCCGGTCTGGGAAGACATTAAACACTTTAATGGCCTGATCTTACCGTATCTCTGAAAGCAGCGCAGGGGACAGTTGAGATGCAGCAGATTTTAGACATTTagtttgatgattttttttgtttgttgttgttgttgctgagAGGCCATACCTGAAGCCATATGTCAGTTTAGATCTTCATGTCAGTGAAAGTTCACCGGTCGTAATAACATGATTGTACACATTTGAATTATTCATACCTTGTAGATAAATTCCAGCATGTTAAGTatctaataaatatatgatatctGGACATGTAATAGAAAATTTGGCCTAGTACAGGTTAATCAATGGaatttttttggacatttaagAGTACTTTTTTGTCAGATATTTTAGAGGAAACGCTTGTTTCAGGTAAGACTGCTCTtcaggagatttttttttttcatgatttta

Function

symbol description
atf2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and cAMP response element binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human ATF2 (activating transcription factor 2).

NR:

description
cyclic AMP-dependent transcription factor ATF-2 isoform X1

GO: NA

KEGG:

id description
K04450 ATF2, CREBP1; cyclic AMP-dependent transcription factor ATF-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249304.1 True 3078 mRNA 0.48 12 4197917 4218490
XM_043249305.1 False 2994 mRNA 0.47 11 4197917 4218493
XM_043249307.1 False 2387 mRNA 0.52 11 4206435 4218494

Neighbor

gene id symbol gene type direction distance location
chn1 chn1,LOC107742958,LOC107739458,LOC105007244 coding downstream 1650 4158860 ~ 4196267 (-)
gpr155a gpr155,LOC107657393,LOC107600701,LOC107671327 coding downstream 57797 4127366 ~ 4140120 (-)
cir1 cir1,LOC102235890 coding downstream 77874 4074035 ~ 4120043 (-)
sp3a LOC107742953,LOC107718453,LOC107671312 coding downstream 159460 4029462 ~ 4038457 (-)
cln5 LOC107749021,LOC107664004,LOC107549926,LOC107670900,LOC107728242,LOC107549738 coding downstream 443253 3750722 ~ 3754664 (-)
atp5mc3a atp5g3a,atp5g3,LOC108424356,LOC107739460,LOC108266717 coding upstream 402 4218896 ~ 4222267 (-)
lnpa lnpk,lnpa,LOC107742983,LOC107657390,LOC107725829,LOC107600748,LOC107671324,LOC107588227 coding upstream 133208 4351702 ~ 4361969 (-)
evx2 evx2,evx2a,LOC107657379,LOC107671304 coding upstream 148666 4367160 ~ 4371591 (-)
nfe2l2a nfe2l2a,LOC107716922,LOC107725823,LOC107671308,LOC107657385 coding upstream 338632 4557126 ~ 4571116 (-)
prkra LOC107747227,LOC107670311,LOC107560808,LOC107561731,LOC107689486 coding upstream 556501 4774995 ~ 4780677 (-)
G67605 NA non-coding downstream 151204 4046486 ~ 4046713 (-)
LOC122351402 NA non-coding downstream 174523 3989592 ~ 4023394 (-)
G67597 zak,LOC107657350,LOC107718456,LOC107600726,LOC107671274,LOC107742952,LOC107588248 non-coding downstream 216727 3979275 ~ 3981190 (-)
G67581 NA non-coding downstream 251012 3945319 ~ 3946905 (-)
G67537 NA non-coding downstream 368274 3829018 ~ 3829643 (-)
G67710 NA non-coding upstream 205483 4423977 ~ 4424298 (-)
G67712 NA non-coding upstream 208794 4427288 ~ 4427646 (-)
G67733 NA non-coding upstream 332743 4551237 ~ 4551875 (-)
G67730 NA non-coding upstream 333930 4552424 ~ 4555750 (-)
G67747 NA non-coding upstream 417516 4636010 ~ 4636342 (-)
wipf1a LOC107657348,LOC107600727 other downstream 47678 4142290 ~ 4150239 (-)
G67668 NA other downstream 75814 4120463 ~ 4122103 (-)
dgkh dgkh,LOC107713732,LOC107549907 other downstream 690625 3437756 ~ 3507292 (-)
G67358 gpx4a other downstream 1003425 3189847 ~ 3194492 (-)
serp2 NA other downstream 1152610 3017043 ~ 3045307 (-)
pde11a pde11a,LOC107657382,LOC107671328 other upstream 397348 4615842 ~ 4666654 (-)
LOC122351499 LOC107670334,LOC107747232 other upstream 573930 4792424 ~ 4822965 (-)
LOC122351456 LOC107747234,LOC107560802,LOC107670305,LOC107752600,LOC107689492,LOC107549748,LOC101883674 other upstream 638156 4856650 ~ 4973955 (-)
G67863 farp1,LOC107747234,LOC107670305,LOC107689492,LOC107752600,LOC107549748,LOC101883674 other upstream 741223 4959717 ~ 4983747 (-)
dbi dbi,LOC107560815,LOC107747240,LOC107752581 other upstream 792019 5010513 ~ 5014813 (-)

Expression


Co-expression Network