lcmt2 (lcmt2,LOC107663870,LOC107698535)


Basic Information

Item Value
gene id lcmt2
gene name lcmt2,LOC107663870,LOC107698535
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11225956 ~ 11231688 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249309.1
TGCTTCCTTGTTGTTTCCACAGGCTGCTTCCACGTGTGTTCAGAGTGATGCCAGTAAACAGCAAGAGAGACCAAGGAAAAGATGCAGCTGTGCAGGGGACTAATGACAGCAGTGTGGTCAGTAAGGTATCAGCAGCTGCACAGGGCTACTTCCACGATGATTTCCTTAAGCATTTTGTGTGCAAGGTGTCAAGAAGAGCTCCACTGATTAATAGaGGTTATTATGTGCGCTGGAAAGCAGTCGATCACTGTGTGAAACAATTCTTCCATGCCACTCAAGCCTGCTCGAGAAGACAGATTCTTTCACTTGGAGCCGGGTTTGACTCCCTGTATTTCCGGTTGCGTGCGGAAGGAGCCCTTGGAGGTGTCACAGTTTTCGAGGTTGACTTTCCAGAAGTTGCCCGACGCAAGACTGCCTTGATCAATAGCAATACTTCTCTGAAGGACACGTTGCCGGATAGAGAGACAGTCTCAAATCAGCAGACTAATGCTGTGTTCATCAGAAGTGGTCATTATAATCTCATTGGTGTGGATGTCAGGAACGAGCAGGAAGTGGAGGCGACTCTGAGCGGAGCTGGACTGCAGTGGGACGCTCCCACACTCGTCTTGTCAGAGGTTGTGCTGACTTATATGGAAACACAATGgtcagatgctgtgattggctgggCTGCCAAGTTGCTCCCACAATCTATGTTTGTGATGTATGAACAAATCCACCCAGATGACCCGTTTGGCAGGGTCATGCAGAACCACTTCCTGAAGCTCAATTCTACCATACACGCTCTGAAACAATATCCAGACACTGTCGCTCAAAAGCAGAGATTCATACAGAAGGGCTGGGAAAAATGTGTCTGTCTGGATATGAACCAGTTCTACTTTGACCTTCTTCTtgaagaagagagacagagagttgAGGGACTAGAGCCTTTTGATGAGTTTGAGGAATGGAACCAGAAATGTTCCCATTACTTTATCCTTACAGCCTCCAAAGGCACTGTGACCAGTCAAGCACTTCTCAAGTTAACGAAGGCGTCCTCCGTTCCTCACATGGCTTCTCACTGGGCCGAGTGTCCTCCCCTGGTCATTCAGCCCATGTGTGGGTCTCCGAGTATAGAGGCTGTCGGTATGGCCTCTGCTCTCCTGGCACCTGGAATCATCTTACTCACCGGAGGCTGTGGGAGAAGCGGAAGAGACACAGCAGCGAGGGTCCTGATCAAAGAGAAGGATGGCTGGAAATGTGCCTGTGTGGAGGCTCTTGGAGATAGAGTGATTAGTCTTTATCAGACGTTGACATCTATCCCTGGAGGTGGAGCTGTGCTCTTCGGTGGAAGAACTTCTCCACTCAATCCAACAGGCAGTGTTGTGTGGGTGACATTTGACCCCGGTAACGATCGATCCCAAGGTGCTGTACAGCTGTCTTTTAAGAACATGGTTTGTACCGGCGCTGGTCCAAAGCCACGCTGGCGACATACATCAACCTTGATAAGTTATAAAGATAAGACCTTTCTGTTAGTGTTTGGGGGACGTACAGAGAAGGATCCAGTTCTAGATGATGCACATTTTCTGAGTTTGGAGGACAAGCGCTGGACTGAGATGACAGTTGTTGGTGCCGTCCCGGAAGCCCGTCATTCCCATTCGGCTTGTCCCTTCGGTGGGGGCCTTGTGATATTTGGAGGCTTGGGGAAAGGTGGTAGACCTCTCGGTGATGCTTCCTATCTGAGACCTACATCATCAGGTTTTTGTTGGGAGACAAAGAATTTGCATCCACCCCCAGTACCCAGATATTCTCATTCAGCCTGTGTAATTAATGAGAAGTTGGTTGTGGTTGGTGGAGTTTGGCTTCAGGCTGATGGAGTACCAGGAGTTGCTGTAATAAATCTAAACACTGGGAGCTGTGTGGAGATCCAGCTGGATACTtcatcTGTGCCTTGGCCTCTGATGCTGCATTCATTCTGCTTGGAGGTGCTGGACTCTGAGGGGTCTGAGATGGTGCTCATTGGTGGAGGAGGAAATTGTTTCTCATTTGGAACTCACCTCAATCTCCACCCCATAACTCTGGATCTACGACCAATACTTTGCAATTCGCGTTAG

Function

symbol description
lcmt2 Predicted to enable tRNA methyltransferase activity. Predicted to be involved in tRNA methylation and wybutosine biosynthetic process. Predicted to act upstream of or within methylation and tRNA processing. Orthologous to human LCMT2 (leucine carboxyl methyltransferase 2).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: tRNA wybutosine-synthesizing protein 4

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K15451 PPM2, LCMT2, TYW4; tRNA wybutosine-synthesizing protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249309.1 True 2090 mRNA 0.49 14 11225956 11231688

Neighbor

gene id symbol gene type direction distance location
rab5b rab5b,LOC107551955,LOC107738511,LOC107598172,LOC107698530,LOC108430508,LOC108266395 coding downstream 9302 11210200 ~ 11216654 (-)
armc8 armc8,LOC107598169,LOC107551954,LOC107733643,LOC107663904,LOC107738509 coding downstream 20988 11193693 ~ 11204968 (-)
idh1 idh1,LOC107663883,LOC107698523 coding downstream 129275 11089670 ~ 11096681 (-)
plekhm3 plekhm3,LOC107733641,LOC107551948,LOC107663884,LOC107598165,LOC107698528,LOC107738519 coding downstream 140046 11051094 ~ 11085910 (-)
fzd5 fzd5,LOC107551950,LOC107733649,LOC107698527,LOC107598163,LOC107738508 coding downstream 180494 11041292 ~ 11045462 (-)
tlr20.4 tlr20.2,tlr20f,LOC107598181 coding upstream 154689 11386377 ~ 11389378 (-)
LOC122351856 tlr20f,tlr20.2,LOC107598181 coding upstream 160552 11392240 ~ 11396663 (-)
gtpbp8 si:rp71-84d19.3,LOC107663822,LOC107567641,LOC107738531,LOC107733632,LOC107598183 coding upstream 168863 11400551 ~ 11404296 (-)
LOC122352021 hs6st3b,LOC107555209,LOC107733651,LOC107663930,LOC107600438,LOC107720131,LOC107655503 coding upstream 222381 11454069 ~ 11464414 (-)
efnb2a efnb2a,efnb2,LOC107555860,LOC107563180,LOC107675360,LOC105018709 coding upstream 751280 11982968 ~ 12000692 (-)
G69396 NA non-coding downstream 195463 11029377 ~ 11030493 (-)
G69362 NA non-coding downstream 271971 10947044 ~ 10953985 (-)
LOC122351427 NA non-coding downstream 279212 10930480 ~ 10946744 (-)
G69361 NA non-coding downstream 280901 10944439 ~ 10945055 (-)
LOC122352018 NA non-coding downstream 317362 10849823 ~ 10908594 (-)
G69467 NA non-coding upstream 127262 11358950 ~ 11365819 (-)
LOC122351998 NA non-coding upstream 559093 11790781 ~ 11954234 (-)
G69596 NA non-coding upstream 854026 12085714 ~ 12156439 (-)
LOC122351183 NA non-coding upstream 1036424 12268112 ~ 12270147 (-)
G69607 NA non-coding upstream 1048105 12279793 ~ 12280197 (-)
mrasa LOC107551943,LOC107663912,LOC107733654,LOC107600440,LOC107738526 other downstream 539329 10680158 ~ 10686627 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other downstream 706499 10515272 ~ 10519457 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other downstream 782337 10433507 ~ 10443619 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other downstream 1315778 9908188 ~ 9910178 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other downstream 3131109 8076468 ~ 8094847 (-)
LOC122351858 slc10a2,LOC107663831,LOC107567642,LOC107675341,LOC107738529 other upstream 164978 11396666 ~ 11493120 (-)
LOC122351308 si:rp71-84d19.3,gtpbp8,LOC107663822,LOC107567641,LOC107738531,LOC107733632,LOC107598183 other upstream 265259 11496947 ~ 11500495 (-)
gtdc1 gtdc1,LOC107709416,LOC107555857,LOC107563182,LOC107675364,LOC107673117 other upstream 859443 12091131 ~ 12194961 (-)
G69650 NA other upstream 1190741 12422429 ~ 12423446 (-)
lrch1 lrch1,LOC107709425,LOC107601076,LOC107673127,LOC107724026 other upstream 1286596 12518284 ~ 12582425 (-)

Expression


Co-expression Network