tbccd1 (tbccd1,LOC107551957,LOC107663868,LOC107733647,LOC107738513,LOC107698532,LOC107598171)


Basic Information

Item Value
gene id tbccd1
gene name tbccd1,LOC107551957,LOC107663868,LOC107733647,LOC107738513,LOC107698532,LOC107598171
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11217132 ~ 11222171 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249310.1
ACGTCACGTTGTGACGCAGACATGGCAACCGCTCATGAACTGTTGTGCGGTTTTATCGTTGTTTGTTTTCTAAGAGCTAATACTTCTTTAGAGATCGTACATGTTTATTAACTTTaactactttattattttaaggtgGTGGTTTGGTGGTTACGTGGGTCTCTAATAATGAAGGAGTTAATGAAAGGATGAAAATAATGAAGTTTTGAGCGGCACGGCAGTGCTCGTTCGCGAAGCGCCTCCTTTTGGTATCTGGTCGCTCGCGCGCGCGCATCAGTGCAACAGCATCGGAAAgcatttcagtttaaatatatacgttGTATATGTTTGTTATGTATTAATCCACGAAGCAATGGTGACCACCTTTTGAAACTCCAAAACTTCCAATGATTAGAAATGGACAAATACACAGCTTGTGTATGGCCACGTCTGGAACCCTTTCTAATGGGGGTGCTTCCTGCCACACCTCCAAGCAAATTCAGCATGCATTATCTGCGCAAGATGGCTTGTTACGTCCGGTCCCGGGACGGCTGCTTCCCCAGGCTCGGCTGGCACATGTGGCGACACATTGCTTGTGGCAAACTGCAGCTGGCGGAGGAGCTTGCCTGGTTGTATTTCGAAACTTTTGACCTGTTGATGCCTCGTTCTGCAGAGCAGAGATTAGAGTGGGCAGAAGCTCTGTCGCAAAGCCATACTCCTAAGGAACTGGACAGGCAGCGTTGTAAGCTGTCAGTGGACACTCTGCAGTTTCTGCTCTTCCTGTATCTACAGCAACTAAACCGAATCTCTCTCCGCACGTCACTGATTGGGGAAGAGTGGCCGAGTCCCAGATCACGAtctccctcttcctcctctgaGAGAGACGCCAAAATAAGCTCACAAAATAAGAACTGGGATGACCAGGCTCATCTTACGTTCATCCAGACACACCTGTCTGAGCTTTTGGAGTTACTAGTAGAGCCAGGCCAGCTGAGCACTTCTGGACAGGTTCTGCGTGACAGCCAGCTCACTTCAGAGGCCCTGGAAAGCCTCAGTTTGTTGTTGGAAGGATCTGTGAGCCATAGCCGTACCGTGCACCCAATCCACAAGCTCCTCAGCCGCTCAACACTGCAGTCCCAGGCAGGATACTCCAAACTCAGCCGCTCCTACTCTCTGCAGCAGTTCCAGGGGTTTCTGCATCAAGCCCTTTGTCTCAATCCCTTCGGCATTTCCACCTGTTTAGAGTCGGGAAAGAAACTGACATGGGCACAGCAAGtaGAGGGCACCctaaaaaaagccaaaatattcagaaatacaCACATGGCTCCTCCAGGAAGTCGATTGTTGCTCATGTCACAGGTCTGCAAACAGACGCTGGCCAAAGATTCTGAAAAGCTGAATAATTCCAACATCAAACTCCACCGCTGCAGTGAGGCTTTCATCTACCTTCTCTCTCCTTTGAGGTCTGTGACCTTGGATAAGTGCAGAAACAGTACAGTGGTATTCGGCCCGGTGGGAACCAGCGTCCACATTCAGAGCTGTGAGAATGTTCGTGTGGTGTGTGTGGCCGGCCGGCTGACGATAGGCGGCTCTTCTCATTGTACAATCCATGCCCTCACCCCTACTCGACCCCTTCTCCTTCCTGGGAATGTGTCTCTCACACTGGGCCCCTTCCACACACATTATCCCACTCTAGAGGATCACATGGCTAGTGTGGGCCTAGCTGTGGTTCCAAATTTATGGGACCAGCCTCTGCTGTTTGGAGCCGAGGGTTCTGCTACAGACACTGGCTTCTACCGCATCCAGCCCCCCTCTGAGTTTTACCCGCTGGTGATACCCTTTCAAATGGAGGGGGATAACTGCGAAATCCCTTGGGGCCTGCCAGCAGATTACCAGAAGGCCTTGGAGAGCCGAGAGAAGATGATAGAGGAATGGCAGAAGACTGTGAAGGAAGCACACCTAAACAAggTCCAGAGGCGGCAGTTTCAGGCCGTAGTGGAGCAGAAGTTTCATGAGTGGTTGCTTGCGACAGGACAAAGACAAGAGCTGGACAGCCTCCTCCCTCCTGTCCTCACCCCCTCCACATCTGTGGACCACCGGCCTTCCAGCCACAACTCCAACCCTGGACCAACGGTACTCAAAGAACAAGCACCCGAACAAGCAATGGGACGAGCACCAACCGTTTGCTAAGGGAACAGCGAAACAACCAAAAGCTGATTTTTGCCGTCTCTGATCCTCAAACATTAGTGTTCTTTTTGTATGAAGACTGTCAATGCTGTATCTAGTTTTGATAGGGACTTTGTCCTGTCACATTATTGACATCTAGAAAAATCTATGCTGGATTAGTGATTAGAGTTGCTATAttattactgcagttttcagATTATGCATTATGCTAATTTTTGTTACGAAACACCAGTGATTCCAGAgaagcattatttaaataaaacagaaaagggACAGATTGCTGCCTTTATTGGAATTTAGAGGATACAGGGATGAGATATGTACTGTAATTATTGACACATGTCGATCTCAATTGGTACGTGGCATAACACATACACTCACTGAAGAGTTGAATGCCTTCACATGGCCAGtatgaaatgttaatatttctcCTTTGCTGTATGTTCACAATGCCTTGCACTGTAATTGCACTATTACTGTATCTTCACCATACAGATTCCAACAACGCTGTCACTTAAAATGTCTCTCGACTGTATTAATGTCTTAagttaacatttgaaatatgtttgaATCAGCATTTTATAGTTTAGTGTACATATTCTATAGACATCTGTGTAACACAAATCAACTTTGGTTTCTTAAAGGTGAAATGGTTTGGTTGTTTAATAAACCATAGCTATTATCATATTCTCTTTTGAAGACAATTTTTAGCTATTTGGACTTCAGACTCCTTGTATCTTACCTTTGAGCTTTAATGGCCGTATTGAATCAGTAGCACTTACCTTTAGCTTGCTGAATGACTATATGTGTGTAATGCATCTTTAAATCATCAAGCAGCAATTCTTTTTCATCTTA

Function

symbol description
tbccd1 Predicted to be involved in maintenance of Golgi location and maintenance of centrosome location. Predicted to act upstream of or within cell morphogenesis. Predicted to be located in cytoplasm; microtubule organizing center; and spindle pole. Predicted to be active in spindle pole centrosome. Orthologous to human TBCCD1 (TBCC domain containing 1).

NR:

description
PREDICTED: TBCC domain-containing protein 1

GO:

id name namespace
GO:0000902 cell morphogenesis biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0000922 spindle pole cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16810 TBCCD1; TBCC domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249310.1 True 3021 mRNA 0.46 7 11217132 11222171

Neighbor

gene id symbol gene type direction distance location
dbr1 dbr1,LOC107733644,LOC107738510,LOC107663903,LOC107598170,LOC107698529,LOC107551939 coding upstream 7551 11205837 ~ 11209581 (+)
kcnh3 kcnh3,LOC107663882,LOC107733652,LOC107551953,LOC107598168,LOC107738522,LOC107698521,LOC108430476,LOC108266388,LOC105016302 coding upstream 24205 11099044 ~ 11192927 (+)
ccnyl1 ccnyl1,LOC107733650,LOC107663902,LOC107698526,LOC107738507 coding upstream 176174 11031448 ~ 11040958 (+)
klf7b klf7b,klf7,LOC107738504,LOC107598162,LOC107733646,LOC107700220,LOC107663863,LOC107551946 coding upstream 221076 10954192 ~ 10996056 (+)
LOC122352013 LOC107733623 coding upstream 367331 10842440 ~ 10849801 (+)
crygs2 crygs2,LOC107663869,LOC107551958,LOC107733648,LOC107598173,LOC107698534 coding downstream 2377 11224548 ~ 11225833 (+)
gtf2e1 gtf2e1,LOC107733656,LOC107738514 coding downstream 9836 11232007 ~ 11244430 (+)
stxbp5l stxbp5l,LOC107738516,LOC107663865,LOC107675353 coding downstream 41555 11263726 ~ 11372571 (+)
poglut2 kdelc1,LOC107567637,LOC107733631,LOC107675345 coding downstream 150755 11372926 ~ 11379422 (+)
tex30 tex30,LOC107663828,LOC107567637 coding downstream 157699 11379870 ~ 11381952 (+)
G69417 armc8,LOC107733643,LOC107663904,LOC107551954 non-coding upstream 15967 11200651 ~ 11201165 (+)
G69403 NA non-coding upstream 126698 11063601 ~ 11090434 (+)
G69358 NA non-coding upstream 275608 10941308 ~ 10941524 (+)
G69355 NA non-coding upstream 293655 10923149 ~ 10923477 (+)
G69340 LOC107733630,LOC107551942,LOC107663909 non-coding upstream 382450 10833788 ~ 10834682 (+)
G69459 NA non-coding downstream 22980 11245151 ~ 11245478 (+)
G69483 NA non-coding downstream 198034 11420205 ~ 11423317 (+)
G69518 NA non-coding downstream 757610 11979781 ~ 12009922 (+)
G69539 NA non-coding downstream 977763 12199934 ~ 12200597 (+)
G69578 NA non-coding downstream 1100080 12322251 ~ 12322532 (+)
creb1b creb1b,creb1,LOC107598164,LOC107738506,LOC107698524,LOC107663917 other upstream 186723 11021736 ~ 11030409 (+)
il1rapl1a il1rapl1a,LOC107655515,LOC107600393,LOC107663843,LOC107555221,LOC107706095 other upstream 821902 10328731 ~ 10395230 (+)
si:dkey-100n23.5 LOC107748207,LOC107555230,LOC107720121,LOC107655523 other upstream 1042349 10167336 ~ 10174783 (+)
piga piga,LOC107748211,LOC107555234,LOC107663925,LOC107655498,LOC107600385,LOC107720146 other upstream 1103776 10092350 ~ 10113356 (+)
thsd7ba thsd7b,thsd7ba,LOC107663893,LOC107751610,LOC107720322,LOC107658187,LOC107658188,LOC107558036 other upstream 1650135 9443125 ~ 9566997 (+)
LOC122352020 uggt2,LOC107600415,LOC107720140,LOC107663813,LOC107655477,LOC108430493,LOC107706079,LOC108266228 other downstream 243433 11465604 ~ 11490149 (+)
G69527 arhgap15,LOC107563181,LOC107673132,LOC107709415,LOC107555858,LOC107675340,LOC107711394 other downstream 824328 12046499 ~ 12155804 (+)
epc2 epc2,itm2b,LOC107709422,LOC107724031,LOC107675331,LOC107673124,LOC107709423 other downstream 1212817 12434988 ~ 12452365 (+)
G69670 LOC107673130,LOC107555834,LOC107709428,LOC107724029,LOC107675357 other downstream 1405364 12627535 ~ 12629535 (+)
LOC122351618 clasp1a,clasp2,LOC107741904,LOC107714287,LOC107673735,LOC107596084,LOC107706129,LOC107696541,LOC107669402 other downstream 1510127 12732298 ~ 12803408 (+)

Expression


Co-expression Network