jagn1a (jagn1a,LOC107555208,LOC107748222,LOC107720154,LOC107655493,LOC107600432,LOC107663862,LOC108432576)


Basic Information

Item Value
gene id jagn1a
gene name jagn1a,LOC107555208,LOC107748222,LOC107720154,LOC107655493,LOC107600432,LOC107663862,LOC108432576
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10236298 ~ 10237964 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249349.1
ATTGCGCGGAGGGGCGGAGGGGCGGAGGGATTCTTCACTGCCATGTTTGTGCGCATGAGCAACATATTATTGCCTTCATTGATAAAAATCCTTTGTGTTAACGTTTCCTCGTCTAATCTCACTGTCGCTTTCGGCGCGTTTCATCACTACATAAGttTGTTACAGTCTGGAAATCGGCAATGGCATCACGTGCAGGCCCAAGAGCTGCAGGGACCGATGGGAGTGATtttaaacacagagagaaagtggCTTCTCATTATCAGATGAGTGCTTCATTGAAATCTGAGATAAAGAAGCTCACCGTTGTGCATTTCTTCATATGGATACTGGTGGCGGCACAGGTGGCTGTTAGTCATCTCAATCTGGTGTCACATGATCTGGTGGCCATGCCCTATCAGTGGGAGTATCCGTACCTTTTGAGTCTCGTGCCCTCGTTCATCGGAGCCCTGGCCATGCCAAAAAACAACATCAGCTATCTGGTGATCTCCATGATCAGTGCTGGTCTGTTCTCAGTGGCACCCTTGATTTTTGGCGCAATGGAAATGTTTCCACTGGCCCAGCAGCTGTACCGACATGGAAAAGCTTACCGGTTTATCTTTGGTTTCTCAGCTGTATCTGTGATGTATCTACTCATGGTGATCACCATTCAGGTGCACGCATGGCAAATCTACTACAGCAAGAAGCTTCTGGATGCCTGGTTTAACTCAACacaagagaagaagaagaaataaacatgCTGTTGTATACCTGAATTCATCCACCATATTTTTCTGTCTCGGTTGTTAATGCAtgcaattattataaatgtttagatatttgcaatttaaatacacaattgtAAGCTAACAAAGTTTACttaatatgtgtatttttttattattattatttattcacatgtTAAAATTATGCTTACCTTATTAAATtgtttaccttttttgttttatcgtgtaatttaaaacttgaaattctgttgtattacaaaatgtttagtcCATGTCAAGAATACAGAGCCACTCacctcatttttatttctttataataaaataaaaataaa

Function

symbol description
jagn1a Predicted to be involved in several processes, including granulocyte colony-stimulating factor signaling pathway; neutrophil differentiation; and neutrophil migration. Predicted to act upstream of or within immune system process and protein transport. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in severe congenital neutropenia 6. Orthologous to human JAGN1 (jagunal homolog 1).

NR:

description
protein jagunal homolog 1-A-like

GO:

id name namespace
GO:0007029 endoplasmic reticulum organization biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249349.1 True 1054 mRNA 0.40 3 10236298 10237964

Neighbor

gene id symbol gene type direction distance location
tfg tfg,LOC107655517,LOC107720125,LOC107748203 coding downstream 627 10226387 ~ 10235671 (-)
rpgra LOC107555232,LOC107663889 coding downstream 76292 10149875 ~ 10160006 (-)
srpx srpx,LOC107748210,LOC107663918,LOC107555235 coding downstream 87057 10140293 ~ 10149241 (-)
LOC122351802 NA coding downstream 134570 10098080 ~ 10101728 (-)
LOC122351801 NA coding downstream 140054 10092350 ~ 10096244 (-)
col8a1a col8a1a,col8a1,LOC107720134,LOC108432575,LOC107748221 coding upstream 1333 10239297 ~ 10247492 (-)
tmem30c tmem30c,LOC107655489,LOC107706099,LOC107720155,LOC107555223,LOC107600433,LOC107663858 coding upstream 40894 10278858 ~ 10284622 (-)
cmss1 cmss1 coding upstream 47062 10285026 ~ 10289515 (-)
LOC122351326 LOC107706086,LOC107555206,LOC107663846,LOC107720148,LOC107655485,LOC107600435 coding upstream 170795 10408759 ~ 10411514 (-)
rnaseh2b rnaseh2b,LOC107663845,LOC107555203,LOC107720151,LOC107655484,LOC107706085,LOC107600411 coding upstream 178292 10416256 ~ 10419386 (-)
G69168 NA non-coding downstream 97539 10136649 ~ 10138759 (-)
G69136 LOC107555234,LOC107655498,LOC107748211,LOC107663925,LOC107720146,LOC107600385 non-coding downstream 126055 10108975 ~ 10110243 (-)
G69147 NA non-coding downstream 149276 10085433 ~ 10087022 (-)
G69018 NA non-coding downstream 290496 9913086 ~ 9945802 (-)
G69004 NA non-coding downstream 344702 9890651 ~ 9891596 (-)
LOC122351639 NA non-coding upstream 15969 10253933 ~ 10263447 (-)
G69223 NA non-coding upstream 188263 10426227 ~ 10426465 (-)
G69228 NA non-coding upstream 206329 10444293 ~ 10444641 (-)
G69231 NA non-coding upstream 207313 10445277 ~ 10446767 (-)
G69346 NA non-coding upstream 599548 10837512 ~ 10844040 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other downstream 326120 9908188 ~ 9910178 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other downstream 2141451 8076468 ~ 8094847 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other downstream 2211626 8014449 ~ 8024672 (-)
LOC122351350 cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538 other downstream 3082344 7070985 ~ 7153954 (-)
G68188 irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 other downstream 3975229 6246900 ~ 6261069 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other upstream 195543 10433507 ~ 10443619 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other upstream 277308 10515272 ~ 10519457 (-)
mrasa LOC107551943,LOC107663912,LOC107733654,LOC107600440,LOC107738526 other upstream 442194 10680158 ~ 10686627 (-)
LOC122351858 slc10a2,LOC107663831,LOC107567642,LOC107675341,LOC107738529 other upstream 1158702 11396666 ~ 11493120 (-)
LOC122351308 si:rp71-84d19.3,gtpbp8,LOC107663822,LOC107567641,LOC107738531,LOC107733632,LOC107598183 other upstream 1258983 11496947 ~ 11500495 (-)

Expression


Co-expression Network