olig1 (olig1,LOC107731749,LOC107569756,LOC107683299,LOC107719828,LOC107659903,LOC107595892)


Basic Information

Item Value
gene id olig1
gene name olig1,LOC107731749,LOC107569756,LOC107683299,LOC107719828,LOC107659903,LOC107595892
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 15930621 ~ 15932536 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249362.1
agtgaaagagtaAGACATTAGCTCATTACAGCAGTACTTCTCTCATATTCTTCGAATGGTTAAGGAGAGCATTTCAAAAATTTCTATGAAGGACAACTACGTGGATAAAAGGGCAAAGATTCTCATtgagcattttacatttaaccgTTACTGTTCTTAGGAAAACTGACTCACGACTAGACAAATATGGACTTGAAGAAGTGAACTGCTTTATTATTACTCAATCCCTGGAAGAAGATCTGGAGTGTGTGGACCAAAAGCTTGAAGAATGCAGGCTGTGCCTGGTTTTAGATGCAGAGAGCAGGGTGAGGGCTCTTTGCAGCAACTCATGCCAAGAATGGTACGGGTAACAGGAGTAGGAGGACAAGGATCCAGTGCTGGGGGTGTCCAGGGGCCTCACAGATCCTCAAAACCCCCTCGTGAGCTTAGTGTGGAAGAGCAACAGGAGCTACGGAGAAAGATCAACAGtcgtgagagaaagagaatgcaGGACCTCAACGTGGCCATGGATGCTTTACGGGAGGTCATGGTGCCCTACTCTTCGCCTACTGGTGTAGGTGGAACACTGCAGCACCCTTATCTCCCTCCTGGAGCCCCTCCGACCGGACGCCGCCTGTCTAAGATCTCCACTCTGGTGCTGGCCCGTAACTACATCCTTCTCCTAGGCTCCTCCTTGCAGGAGATGAGGCGTCTGCTGGGCGAGGTCAGCATTGGGATGGGCGTCAGTGGGACTGTACCACGTCTGCTGCTGACAGGGGGTTGGCCATTTCTTACCGGGCCAGGACAACTTCTGCTTTCCCCTCCTGAGCAGCAAATGGGTGCAGCAAAGTGCCCTCTTCTGCCACACGGTACCCAGGAGGAGCCCTTGGCATGGGGGTCAGGCAGCATGTCAGAGAGCCCGGTGTGCCAGTGTGGGGTGTGCCGGACCCCACGGGTGGTGCATGTTAATCCCTCTACACGTTTCTCAAAATGATTCCAACATGCCTTGGAGAAAGGCTTGAAAAAAGAACAATACAACAATGCGGTTTTTGATGTATGTGAAGGGTGGGGTGTCTGGTtcattttttggtaacactttaaataaaggttcaatttgttaattttaaggAATAGGTGAACCTGTTCACCCACAAGTTATTTCGTAATTTCTTTACCATCTTGACATTTCTAAACCTGCtcgactttcttctgtggaagacaaatgaagaaaaatttatttgtaccacagaagaaagaatgtCACATGGTCTTGAAATGCTGGTAGATGATGGTAGATGGCAACATTTTTGTTGTCCCTAAGTATCTAAAAAACACTGAGCGTGCATTTTGGTTCACGTTAGTTTCCACATATCCTAACACATTTCAACTTGAACGTGCAAATTTGTATTTGGCTAAGTAAACCCTtttaagtgttaccaatattttcttttgcaaaACTCTCCAATATATGTTTCCCATACAGTTGCTCTCTACTTTGTATTTGCTAACAATTAAACT

Function

symbol description
olig1 Enables DNA-binding transcription factor activity. Acts upstream of or within oligodendrocyte development. Predicted to be active in nucleus. Is expressed in central nervous system; oligodendrocyte; and trunk. Orthologous to human OLIG1 (oligodendrocyte transcription factor 1).

NR:

description
oligodendrocyte transcription factor 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0014003 oligodendrocyte development biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09085 BHLHB1_6_7; class B basic helix-loop-helix protein 1/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249362.1 True 1497 mRNA 0.46 2 15930621 15932536

Neighbor

gene id symbol gene type direction distance location
ercc1 ercc1,LOC107570013 coding downstream 17051 15909284 ~ 15913570 (-)
LOC122351156 LOC107731741,LOC107569997 coding downstream 23054 15906028 ~ 15907567 (-)
LOC122351158 LOC107690624,LOC107595883 coding downstream 26438 15902347 ~ 15904183 (-)
dnajb11 dnajb11,LOC107595843,LOC107690604,LOC107719809,LOC107659888,LOC107731764,LOC107569729 coding downstream 31469 15894122 ~ 15899152 (-)
satb2 satb2,LOC107731767,LOC107690605,LOC107569722,LOC107595845,LOC107659884,LOC107719815 coding downstream 54524 15834539 ~ 15876097 (-)
olig2 olig2,LOC107659900,LOC107719825,LOC107595891,LOC107731746,LOC107569749,LOC107690629 coding upstream 8354 15940890 ~ 15943090 (-)
gatd3 zgc:112056,LOC107731744,LOC107570103,LOC107595889,LOC107659887,LOC107690602,LOC103039907,LOC105908687,LOC108412974,LOC106582488 coding upstream 31258 15963794 ~ 15966467 (-)
LOC122351640 LOC107719827 coding upstream 34227 15966763 ~ 15973561 (-)
hpxa LOC107690487,LOC107719811,LOC107595840 coding upstream 42029 15974565 ~ 15978301 (-)
LOC122351503 LOC107731735,LOC107690619,LOC107690492,LOC107595881,LOC107570033,LOC107719821 coding upstream 65605 15998141 ~ 16006044 (-)
G70660 NA non-coding downstream 167952 15762383 ~ 15762669 (-)
G70633 pikfyve,LOC107719798,LOC107681306,LOC107731754 non-coding downstream 286345 15642259 ~ 15644276 (-)
LOC122351574 NA non-coding downstream 292185 15628883 ~ 15638436 (-)
G70581 NA non-coding downstream 509044 15418999 ~ 15421577 (-)
LOC122351294 NA non-coding downstream 667945 15256988 ~ 15262676 (-)
LOC122352066 NA non-coding upstream 15577 15948113 ~ 15953976 (-)
G70894 NA non-coding upstream 185746 16118282 ~ 16120319 (-)
LOC122351188 NA non-coding upstream 672831 16605367 ~ 16631420 (-)
G70955 NA non-coding upstream 677734 16610270 ~ 16610561 (-)
G70956 NA non-coding upstream 680581 16613117 ~ 16613424 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other downstream 158757 15771421 ~ 15771864 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other downstream 531184 15389218 ~ 15399437 (-)
G70549 NA other downstream 624646 15303103 ~ 15305975 (-)
LOC122351495 NA other downstream 1557947 14359646 ~ 14372674 (-)
G70317 NA other downstream 1676845 14196479 ~ 14253776 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other upstream 788268 16720804 ~ 16746222 (-)
G70986 pou2f1b,LOC107748141 other upstream 884604 16817140 ~ 16823775 (-)
cd247l cd247l,LOC107595825,LOC107673686,LOC107756738,LOC107597501,LOC107748195,LOC107695491 other upstream 954217 16886753 ~ 16889547 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other upstream 1303336 17235872 ~ 17255491 (-)
ncam2 ncam2,LOC107756756,LOC108426076,LOC107595857,LOC107673712,LOC107748174 other upstream 1431651 17364187 ~ 17521560 (-)

Expression


Co-expression Network