LOC122351939 (LOC107720137)


Basic Information

Item Value
gene id LOC122351939
gene name LOC107720137
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10446980 ~ 10462522 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249371.1
AAAGGAAACTCAAAGAAAGGTGCGATGAAAACTTCAGTCGTTGTTGAAAGTCATCAAGCAGAGCTCAACATGCCATCGAATCAAATTATTTGTGCACTTTGCAAAAAATCAGACGAAACTGAAGTCACCGGGCCCCTCTCCTCCAAACACAACATCTCCGCACATCAAAACTGTTTGTTGTACGCATCAGCGATCTTCTGCACGAATTCACCCACCTACGACGACCTGTTTGGATTTGATGTAGAAGATGTGAAGAAAGAGCTGAAGAGAGGGAAAAGACTATTTTGCCACTACTGTAAGAGAGCCGGTGCTACAGCCGGCTGTGACGTGAAGCGCTGTAAACGCTCGTACCATTACCCCTGCGCCATAAAGGACCGAGCCAGAGCCGCTGAAAACAGTAACGAAGGCAGTTATAAATTGTTCTGTGCATTACATGTTTcagaatccaaaaaaataagtCCTTTAAAAGTGTCGTCTCCTCAGAAAGCTTCTGGATCATCAGACCATCCAGAAGATTTGAAGGACAagAGTCCACATACATTCCCATATATGTACAGACGACGTTTGCGTGTgCCCAGGGGAACATATAACAGCACTCCAGACTCAAAATCAgATGATGAAAGCCCAACAAGCGCTGACTGTGTAATAGTTTCAGGGGTGTCTGATCCGGAGAACTCTGTGCTACAAAAACAGCCCAATCAGTCCAGTCCTGTGCCTAAAAGAAAGAGGCTGTGTGAAAAACTCAAACCATCACCCACAGaagCTGACGACGACACAGACGTTGATTCGtctcaggAAGAGTCTCAGAGTTTGTTATTCTCAAAACGGTACCGTATCACAATGCCCTGTCAAGTTATTTTGGACTCTGGACCCTCTGTAGAATCAGAGCACAGTCTAGAGCCTTCTTCACCTGCCAGTGCAGCTGTGTCTACCTCCCCTGAACAGAAGGAAACGGCGTCCACAAGCAGATCTTCTCCAGCGCCCAGAGCTCCGACCACTGAGCCTGTCTCACCAACTATTTATTCTGTGCCTGCTGTGGAGCGTTTCAGCTGTGATTCAGGTCGTCCCGCTGCAGCGAAGGCCTCTAAAGTGGGCACCACAGAGAAACCCAAGTCCAGTGCCAGCGTGTTTTGGACCCGATGTAACGAGGCTGGGTGGACCAAAGAGATCTTCTCAGAGCTCGAGTCTCAGCTGAGCAGTCTTGGAGAAAGAGTGCAGTCACAGAAAGCCAGTGACCAAGATTATGATGCTGCTCTCAAAGTGTTGGAGGCATCTGGACGTCTACCTTGCATTATTTCTCAGCTGGAACAAGACATAGAGAAACAGGAACAGGacttaaagaggaaaaaagcagCACTGAGGGATGCCAAAGCTGTACTAGATGTTTAATGTATAAAACATGAACGTGATGTTCTAGTTGCAACTGAAACTGACAAAACAGCCCCTGATGAGGCTTTAGATCAACCAACTTGCCTGAAGGGCTAGTCGAAGCTGTTACTCGTGTGCTTTCataagagagaaaagaaaagtctGTTCCCAAGTATGGCCACTAGGTGGCAGCAGACACATAACTGCTTTCAGAGACTCAAAACATTCCGTCGTCTTTCGACTCTTTGTCCTTTCAACTGCGCTGTTTAGTCCAAACTTTTCCTgaacagtttttacatttatttacattccataaatattacaatacttttaaaaaagtattttaaaaacatgattcatataattaataatcagtCCATGtacattcagaaataaacataccaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC107720137

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249371.1 True 1773 mRNA 0.45 17 10446980 10462522

Neighbor

gene id symbol gene type direction distance location
rnaseh2b rnaseh2b,LOC107663845,LOC107555203,LOC107720151,LOC107655484,LOC107706085,LOC107600411 coding downstream 27594 10416256 ~ 10419386 (-)
LOC122351326 LOC107706086,LOC107555206,LOC107663846,LOC107720148,LOC107655485,LOC107600435 coding downstream 35466 10408759 ~ 10411514 (-)
cmss1 cmss1 coding downstream 157465 10285026 ~ 10289515 (-)
tmem30c tmem30c,LOC107655489,LOC107706099,LOC107720155,LOC107555223,LOC107600433,LOC107663858 coding downstream 162358 10278858 ~ 10284622 (-)
col8a1a col8a1a,col8a1,LOC107720134,LOC108432575,LOC107748221 coding downstream 199488 10239297 ~ 10247492 (-)
mcf2lb LOC107663886,LOC107555216,LOC107720127,LOC107655510,LOC569231 coding upstream 473 10462995 ~ 10479085 (-)
rnf17 rnf17 coding upstream 25175 10487697 ~ 10504466 (-)
uggt2 uggt2,LOC107600415,LOC107720140,LOC107663813,LOC107655477,LOC108430493,LOC108266228 coding upstream 69131 10531653 ~ 10558579 (-)
LOC122351611 LOC107733620,LOC107663814,LOC107555196,LOC107720141,LOC107600416,LOC107655476 coding upstream 143672 10606194 ~ 10609391 (-)
zgc:162780 zgc:162780,LOC107551941,LOC107566157,LOC107738501,LOC107733635 coding upstream 367392 10829914 ~ 10833116 (-)
G69231 NA non-coding downstream 213 10445277 ~ 10446767 (-)
G69228 NA non-coding downstream 2339 10444293 ~ 10444641 (-)
G69223 NA non-coding downstream 20515 10426227 ~ 10426465 (-)
LOC122351639 NA non-coding downstream 183533 10253933 ~ 10263447 (-)
G69157 NA non-coding downstream 204768 10117793 ~ 10242212 (-)
G69346 NA non-coding upstream 374990 10837512 ~ 10844040 (-)
LOC122352018 NA non-coding upstream 387301 10849823 ~ 10908594 (-)
LOC122351427 NA non-coding upstream 467958 10930480 ~ 10946744 (-)
G69361 NA non-coding upstream 481917 10944439 ~ 10945055 (-)
G69362 NA non-coding upstream 484522 10947044 ~ 10953985 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other downstream 3361 10433507 ~ 10443619 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other downstream 536802 9908188 ~ 9910178 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other downstream 2352133 8076468 ~ 8094847 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other downstream 2422308 8014449 ~ 8024672 (-)
LOC122351350 cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538 other downstream 3293026 7070985 ~ 7153954 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other upstream 52750 10515272 ~ 10519457 (-)
mrasa LOC107551943,LOC107663912,LOC107733654,LOC107600440,LOC107738526 other upstream 217636 10680158 ~ 10686627 (-)
LOC122351858 slc10a2,LOC107663831,LOC107567642,LOC107675341,LOC107738529 other upstream 934144 11396666 ~ 11493120 (-)
LOC122351308 si:rp71-84d19.3,gtpbp8,LOC107663822,LOC107567641,LOC107738531,LOC107733632,LOC107598183 other upstream 1034425 11496947 ~ 11500495 (-)
gtdc1 gtdc1,LOC107709416,LOC107555857,LOC107563182,LOC107675364,LOC107673117 other upstream 1628609 12091131 ~ 12194961 (-)

Expression


Co-expression Network