slc40a1 (slc40a1,LOC107660595,LOC107602151)


Basic Information

Item Value
gene id slc40a1
gene name slc40a1,LOC107660595,LOC107602151
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 19741640 ~ 19748311 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249396.1
GCGGTCCGAGAGGAGGGCTGCGTGGTAAACACGGAGGTCGGCTGCGTCCGTCAGCGCGGGTCTGGCCCTTTCGGGAATTATATGTTTTCACACATTTAGCCGTTCTAGAAGAGGTTATTTCTCTCCAACTTCAGCTACAGTGATAGCTAAGTTTGGAGAGGAGAGAAGGGAAATATTCGCGTTTTTGTGTGAGGAGATATTTGCGGCGGAGGATTTACTTGTTCGACCTGAACAATACAAAGGAATTTAAATCTTGACAAATTAAACCGAGCAAATACAATCGACTTTCAATGCACAATGGACAGCGCTGCATCTAAAAAACCTTGCTGTGGAAGAGTTGGCGATTTCTTGAAGTCTGCGAAATTCCTCATTTACCTCGGACATGCCCTGTCTACATGGGGGGATCGGATGTGGAATTTTGCTGTGGCTGTGTTTTTGGTGGAGCTGTATGGCAATAGTTTACTCCTGACAGCCGTGTATGGACTGGTGGTTGCGGGGTCTGTCCTCTTACTGGGCGCTATTATTGGTGACTGGGTGGACAAAAACCCCAGACTGAAAGTGGCGCAGACGTCTTTAGTTGTCCAGAACAGTGCTGTCATTCTTTGTGGTGTCCTACTGATGGTCGTTTTCCAATATAAAGTACAACTTACAACCTTGTACGATGGATGGTTGCTGACCACATGCTACATTATGGTCATCACCATCGCTAACATCGCTAACCTGGCCAGCACGGCTATGTCCATCACCATCCAGAGGGACTGGGTCGTGGTTGTGGCTGGAGATGATCGGAGCAAACTGGCAGATATGAATGCAACTGTGAGAATAATTGACCAGTTAACCAACATTATGGCTCCAATGCTGGTGGGCCAGATCATGGCATTCGGCTCCAATTTTATCGGCTGTGGTTTTATCTCGGGCTGGAACCTGTTCTCCATGTGCTTGGAGTACTTTTTACTTTGGAAAGTTTATCAGAAGACTCCAGCACTTGCAGTCAAGGCAGGACAGAAGGACTCTGATGACCAAGAGCTGAAGCACCTCAATGTACAAAAAGAGATTGGAAATAATGAAAATCCAGTTGAAGGCTCCCAGCTGATGAATGAAACTGCTGAGGTTAAGAAGAACACCAGTTGCTGCTACCAAATGGCAGAACCCATCCGCACCTTTAAGGATGGCTGGGTGGCCTACTACAACCAGTCCATTTTCTTTGCTGGCATGTCTCTGGCTTTCCTCTACATGACCGTTCTGGGTTTCGACTGCATCACCACGGGCTACGCTTACACTCAGGGCCTGAACGGCTCCGTGCTCAGTCTCCTCATGGGAGCTTCGGCTATATCTGGCATCTGTGGAACTGTGGCTTTCACTTGGGTCAGAAAGAAGTGTGGCCTGATCAGAACCGGCTTCATCGCTGGAGTCACCCAACTATCTTGCCTCATGCTCTGCGTAGCATCCGTCTTTGCTCCTGGCAGCTCTTTCGATCTCAGCGTCTCGCCCTTCAACGAGGTCTTAAGGCATCTGTTTGGAGACAGCGGCTCACTGCGTGAGAGTCCTACTCTTGTTCCTACGATTGAACCGCAGATCCAGATCAACGCCACTGTTTTTGAGGAAGCCCCACAAATAGAGTCCTACATGTCCGTCAGTCTTCTTTTCGCCGGTGTTATTGCTGCTAGAATTGGTCTTTGGTCCTTTGATTTGACCGTGACCCAACTGATCCAAGAGAATGTGATTGAATCCGAGAGAGGTGTCATCAACGGTGTCCAGAACTCCATGAACTATCTTCTTGATCTCCTACACTTCATCATGGTCATCCTTGCACCAAATCCAGAGGCTTTTGGCCTTCTCGTGCTCATCTCGGTTTCATTTGTTGCTATGGGACATATGATGTATTTCAGGTTTGCCTATAAAAGCCTTCGGAGTCGACTTTTCCTGTTCTGTTCACCGGAGCAGAAACCTGATCCAAATATTCCCTCACTTCCAAACTCCGTATAACTCTTAAAGAGACCATAGGCCAATTTTTACTAGAGTATCGCATGCTGTGTACTGGAACtggtttcatttgttttactaACATGCATGCTTTTGCAGTGCTTGTGCATCAAGTATATAGTCTTtgccatttgctaaaataaagGCGGGAAGGCTCTTTCCTTAGCATAGCTTAGAACAGAAATATGTATgtcaaaaaaacatgcagtgctTCCCTCTATCATACTTTTTGTTCAAGGTGCTGTAAAATCGCCTGATAACTAATCATAGGGGGAACAAACCAACACAAACTCTGGTTCTTATGAACTATACATGCTTTAATTACTTTTGTAAAAGCTCCAAAGCAAAAACGGGCGTATTTATTctacttttacatattttattagtttttcgATTTTATGGTTGTAGTTAACCTTTAGACTACTTATGTACGTTTTGCAACATGCGCTCCTTAAGATAGTGTAGTTTTGTAACGCTTGGCCCTCTGTGCTTTTTGCAAGCCATGGTTAAAGTCTCTTTAATAGTTATTTGGAGCGTGATAGTCGTTCATTCAGGTATGCTTATAtgatacttatatatttatatacacatgtagTCAGTATTCTGTATCTCAGCTTCAGTGGTGCTACATTGTTATTAGAACTCTTCTGGAAAGCTATGCagacatacagtttgtacatgTAACCAAAGTGGATTGTGGAAGTGAGGGAATCGCATTCTTTCCTTGTGTTAGACATTCCGAATTTTATCGGTGAGAGATTCAGGCCCCGATACACTCGCCCCATTGCAACTCGAGTTTTTCGCACTAGATTTGTTCGTCTCGTCTGATTCGAAAGTGATTTTAGCACATAATTCTTGTTTTTACAATGATTGTTACACAAGCACTTTACATGATTACATTTTGTCCATTACAAAATAAGCGCAACAAGACACTTCAGGTATTCAAATATTTGCACAAAATTGTAGCAGCGTCAAAACTTAGAATATTCTCATATCCGCTTCAAAAATTGGGATTTTAAAACTCACTAATAACTCAAAACACCCTCGTGAGCCGCCGCCACACCTCCGTTTTCCCTTCATTCAAATCACATGCTAATCTAATGTTCCACAGCACAACGTCAACTTCAAAGATCTTCCTTTGAGCCACAAAATTATTCAGGTAACAACATCCTTTTGACAACCACAGCTGGCTcgacatatatatattttgtaatagttGTGTAATATTGATGTTGGAGACCAGCGGGAATCCACCATATGCACAGAACAGAGAAGGGATTAATGAGTCCAGTGTGGACGGCTGGTTTGAAGTGCAGCTGGTCTCAAACGCAGGTGCCAAGATTACTCTGGTTAAATAAGCATTTGTGTGTCAGGATTATATCACAAGGCCTTTATGAAcctactgtacatttttttttaatacttaatcGCTTCGGTGCATACTGTCTGTATTTCTGTGAATGTAAAGccttctgtaaaatattttttatattcttgtgtTGAACAGTTTGATTTGAATTCAGCTTTGTCCTATGTAACACCACTTACCCTTTAcagaattacaaaataaaacacttttgcaaAAGAACAACTTAAAAC

Function

symbol description
slc40a1 Enables iron ion transmembrane transporter activity. Acts upstream of or within several processes, including bone mineralization; hemoglobin biosynthetic process; and hemopoiesis. Predicted to be integral component of membrane. Predicted to be active in basolateral plasma membrane. Is expressed in digestive system; gill; nervous system; solid lens vesicle; and yolk syncytial layer. Used to study iron deficiency anemia. Human ortholog(s) of this gene implicated in hemochromatosis type 4. Orthologous to human SLC40A1 (solute carrier family 40 member 1).

NR:

description
solute carrier family 40 member 1-like

GO:

id name namespace
GO:0034755 iron ion transmembrane transport biological_process
GO:0043362 nucleate erythrocyte maturation biological_process
GO:0042541 hemoglobin biosynthetic process biological_process
GO:0055072 iron ion homeostasis biological_process
GO:0046688 response to copper ion biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0010039 response to iron ion biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005381 iron ion transmembrane transporter activity molecular_function

KEGG:

id description
K14685 SLC40A1, FPN1; solute carrier family 40 (iron-regulated transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249396.1 True 3582 mRNA 0.43 8 19741640 19748311

Neighbor

gene id symbol gene type direction distance location
zgc:136439 zgc:136439,LOC107660597,LOC107602150,LOC107728935 coding upstream 7669 19732355 ~ 19733971 (+)
osgepl1 osgepl1,LOC107660598 coding upstream 21205 19717262 ~ 19720435 (+)
mstnb LOC107728928,LOC107602146,LOC107660602,LOC107657539 coding upstream 64804 19673260 ~ 19676836 (+)
hibch hibch,LOC107660603,LOC107714371,LOC107741945 coding upstream 75027 19643049 ~ 19666613 (+)
map2 map2,LOC107673740,LOC107555937,LOC107741924,LOC107660616,LOC107596094 coding upstream 857315 18793081 ~ 18884325 (+)
stat4 stat4,LOC107660593,LOC107728930,LOC107714380,LOC107657497 coding downstream 18352 19766663 ~ 19778896 (+)
stat1b stat1,LOC107728932,LOC107660594,LOC107602152,LOC107714382,LOC107565020 coding downstream 33352 19781663 ~ 19790963 (+)
LOC122351701 NA coding downstream 43900 19792211 ~ 19793933 (+)
nemp2 LOC107660589,LOC107728924,LOC107714385,LOC107602139,LOC107565024,LOC107657526 coding downstream 124110 19872421 ~ 19881143 (+)
spegb speg,LOC107602155,LOC107714387,LOC107728905,LOC107657495 coding downstream 150513 19898824 ~ 19972821 (+)
G71586 NA non-coding upstream 106793 19634452 ~ 19634847 (+)
G71583 LOC107741931,LOC107660608,LOC107602131 non-coding upstream 121164 19615694 ~ 19620476 (+)
G71581 LOC107741931,LOC107602131,LOC107660608,LOC107714367,LOC107657499,LOC107565025 non-coding upstream 134439 19606985 ~ 19607201 (+)
G71517 NA non-coding upstream 485407 19256030 ~ 19256233 (+)
G71509 NA non-coding upstream 490483 19250839 ~ 19251157 (+)
G71627 NA non-coding downstream 3271 19751582 ~ 19752090 (+)
G71628 NA non-coding downstream 3997 19752308 ~ 19752693 (+)
G71630 NA non-coding downstream 4919 19753230 ~ 19753756 (+)
G71629 NA non-coding downstream 6213 19754524 ~ 19755093 (+)
G71631 LOC107660592,LOC107728907 non-coding downstream 7555 19755866 ~ 19756178 (+)
ormdl1 ormdl1,LOC107602148 other upstream 27236 19709364 ~ 19714404 (+)
G71585 NA other upstream 120147 19621284 ~ 19621493 (+)
vwc2l vwc2l,LOC107660607,LOC107657506,LOC107714362,LOC106586444 other upstream 197963 19512854 ~ 19543677 (+)
cps1 cps1,LOC107660611,LOC107741925 other upstream 810178 18896602 ~ 18931462 (+)
lmln lmln,LOC107741941,LOC107555912,LOC107673747,LOC107596075,LOC107714369,LOC107660656 other upstream 1052098 18682672 ~ 18689542 (+)
si:dkey-10c21.1 NA other downstream 465084 20213395 ~ 20218120 (+)
gulp1a gulp1,gulp1a,LOC106581930,LOC107584160,LOC107717010,LOC107657514,LOC107562715,LOC107699007,LOC107714392 other downstream 600516 20348827 ~ 20362462 (+)
G71825 ttnb,LOC107657493,LOC107714355,LOC107601612,LOC107716993,LOC107698997 other downstream 676690 20425001 ~ 20750851 (+)
G71835 ttnb,LOC107716993,LOC107698997,LOC107601612,LOC107714355,LOC107657493 other downstream 688847 20437158 ~ 20764175 (+)
G71842 LOC107728921,LOC107660591,LOC107602138 other downstream 811331 20559642 ~ 20569276 (+)

Expression


Co-expression Network