mnx2a (mnx2a,LOC107551068,LOC107688780,LOC107602884,LOC107716783,LOC107668369,LOC107721589)


Basic Information

Item Value
gene id mnx2a
gene name mnx2a,LOC107551068,LOC107688780,LOC107602884,LOC107716783,LOC107668369,LOC107721589
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7363964 ~ 7366993 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249397.1
TAGAGATGAAAACACGCAGTTATAGAGTAACAAAGTTTCCTCGATTGCCTTAAAGAATTAGATAATATTACGCACGGTCAGGCGAACAGCTTGGTACATCTTAAGTAAAAGTTTTGACTGGCACGCGCTTAAACGTacactatttaataatatattcagCTCGTAAGATTCTCGAGAGCTGAAGTTTTTCTCAATGGATAAGTCGAGGAACTTCCGAATAGACGCTCTGttgtcagagagctctcagcgGATGGCGCGCGAGGCTTCGCCGGGACTGTGCACCGACGGCACCGACATCGAGCCTGCGACCTGCAAACGGACAGAGAGCTCTCCTCCCCGCGCTTTCCAGCTCCAGACGGGGGTCATACCCAAACCGGGCATGCTGAACATCTCTCACCCAGGATTAACGTCGCTTTCCCAAGGGTCTATTCCGGGAATGTATCCCTCGCCTATGTACTCCATCACGGCTCTTGGAGCGCAGCATCCCACCTTCGCGTATTCAGGCTTCGCGCAGCCGTACCCCGAGCACCTAAAAGCGGCGGCCGTGGCCGGTTCGTTTCCGCTAGAGCACTGGCTCCGCGCTGGACTCATAATGCCTCGCCTCGCAGACTACAGCGGGGCACCTCAGTCTGGTTTAATAGGAAAGTGCCGGAGACCACGCACGGCCTTCACCAGCCAGCAACTGTTGGAGCTGGAGAATCAGTTCAAACTCAACAAGTACCTGTCACGGCCCAAACGCTTCCAAGTGGCCACCTCTCTCATGCTGACTGAGACTCAGGTGAAGATTTGGTTCCAGAACCGACGGATGAAGTGGAAGCGCAGCCGTAAGGCTAAAGAGCAGGCTACGCAGCTGGAAACAGACGGCTCCAAGTCAGGCAAGAGAGAAACCAAGCCCAAAGACCTCAGTCGCTGCAGTGCACATGATGACGATGAGGATCTGGACGCCGAGGAGGAAGacgaagaagaggaggaagagttcAGAAAATCGATCAACGCAGGCGTGGGTCTTCCTCACCCCTCGGACTTCCTGAGCTACAGCTCTCACGGCTCTTACTCTGACGACGACCTAGAAGAGATCGGAGGAGACCGAAAGATCAGGCTCGGGTTATGAAGAACTGATGGCACCCGCACGTCCACGAACTGGACGGGTTTAAAGACTGAAAGCTGTTGATGTCAAAACTATCCCTTAGACCCAACGAGTTCCTTGTCCATGACGTTTGTAgtcaaaaaatgtcttaattcaTGAAAATGGTCTTCCAGTTTATTTgcacttaatatttttcttggAACGCTGCTTGTAAACTGCAAATGTATGCTATTTCAGactaacgtttttttttttcttatgtgatCAGAATATTTACTTTATGTGCTAACACGGACATTTCggttgaaaaaaaaggaaagctgTTGAACCAAAACGAGGAAGCCTCGCACTGAAACGTCACAGGCTGACACTTGTGCTCACTGGTCTCTTGAACACGTTTAATTTAATAGTGCGTAGTCAAGAGTGGGTGCTGAAGAACAGATGATTGTCCAGAGGTCATCAATGTCAGCTTTCTTTCAGTAACCATTGACTGGAACACGGAGGAACTGCTAAATCCTCTGTAAATATTGAACAAGGGCAAACTGTGAACGGTGCATTAGTTAGTCCATTAGTTTATGTcatgttgttgatgttggtgtctttaatgttatttaactGTTATAGATTATATCTAATTTATTCAACCGATATCAGGACTCAGTCTGAAGGATGTGTGACCTTTAAGATTGCCGGTAAAACATGTACTTGGAGACAAAAGGGAAATAAACAAAA

Function

symbol description
mnx2a Predicted to enable DNA-binding transcription factor activity. Acts upstream of or within spinal cord motor neuron cell fate specification. Predicted to be located in nucleus. Is expressed in several structures, including pancreatic system; primary motor neurons; rhombomere; spinal cord neural keel; and spinal cord neural plate.

NR:

description
PREDICTED: motor neuron and pancreas homeobox protein 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021520 spinal cord motor neuron cell fate specification biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249397.1 True 1819 mRNA 0.48 3 7363964 7366993

Neighbor

gene id symbol gene type direction distance location
ptprna ptprna,LOC107551086,LOC107688743,LOC107716786,LOC107602900,LOC107668387,LOC107721560 coding upstream 35372 7304840 ~ 7328592 (+)
tmem198a tmem198a,LOC107688741,LOC107716788,LOC107602903,LOC107551083,LOC107721592,LOC108423970,LOC107668403 coding upstream 72422 7271362 ~ 7291542 (+)
ihha ihha,LOC107716791,LOC107688738,LOC107721594,LOC107668405,LOC107551082,LOC107602904 coding upstream 116366 7241336 ~ 7247598 (+)
LOC122351345 si:dkey-4e7.3,LOC107688734,LOC107602908,LOC107716768 coding upstream 209998 7143119 ~ 7153966 (+)
LOC122351346 si:dkey-4e7.3,LOC107688734,LOC107602908,LOC107716768 coding upstream 210200 7149931 ~ 7153764 (+)
cfap65 cfap65,LOC107688747,LOC107668360,LOC107716758,LOC107735777 coding downstream 671 7367664 ~ 7380524 (+)
LOC122351251 LOC107716765,LOC107721581,LOC107551069,LOC107668359 coding downstream 13825 7380818 ~ 7383202 (+)
fn1a fn1a,LOC107716781,LOC107688749,LOC107668382,LOC107721590 coding downstream 37359 7404352 ~ 7430484 (+)
pard3bb pard3bb,LOC107688750,LOC107716778,LOC107721601,LOC107668384,LOC107593023 coding downstream 107005 7473998 ~ 7728791 (+)
nrp2b nrp2b,LOC107688766,LOC107752901,LOC107668386,LOC107716756,LOC107596550 coding downstream 389781 7756774 ~ 7821894 (+)
G68435 NA non-coding upstream 27605 7335491 ~ 7336359 (+)
G68397 desma,LOC107688742,LOC107602901,LOC107716787 non-coding upstream 62469 7280767 ~ 7301495 (+)
G68424 NA non-coding upstream 100251 7262541 ~ 7263713 (+)
G68401 NA non-coding upstream 104570 7256680 ~ 7259394 (+)
G68405 NA non-coding upstream 164147 7199269 ~ 7199817 (+)
G68446 NA non-coding downstream 486488 7853481 ~ 7854278 (+)
G68668 NA non-coding downstream 836860 8203853 ~ 8205963 (+)
G68678 NA non-coding downstream 855594 8222587 ~ 8222817 (+)
LOC122351403 NA non-coding downstream 1233731 8600724 ~ 8614984 (+)
G68808 NA non-coding downstream 1459219 8826212 ~ 8827046 (+)
LOC122351907 LOC107670338,LOC107721263 other upstream 1390841 5962884 ~ 5973123 (+)
G68097 LOC107730457,LOC107670341,LOC107549918,LOC100537317,LOC107752618 other upstream 1478211 5883927 ~ 5885753 (+)
trnam-cau_112 NA other upstream 1906435 5457458 ~ 5457529 (+)
trnar-ccu_65 NA other upstream 1906701 5457191 ~ 5457263 (+)
trnam-cau_111 NA other upstream 1907121 5456772 ~ 5456843 (+)
si:ch211-167j6.3 NA other downstream 974302 8341295 ~ 8342751 (+)
sumo3b sumo3b,LOC107668404,LOC107596521,LOC107749883,LOC103392195 other downstream 1064118 8431111 ~ 8433483 (+)
igf2bp2a igf2bp2a,LOC107749880,LOC107668393 other downstream 1093751 8460744 ~ 8506143 (+)
cryba2b cryba2b,LOC107749902,LOC107562110,LOC107663929,LOC107566327,LOC107560461,LOC107672280 other downstream 1496394 8863387 ~ 8866305 (+)
fev fev,LOC107749901,LOC107562104,LOC107663906,LOC107672289,LOC106581833 other downstream 1500104 8867097 ~ 8871633 (+)

Expression


Co-expression Network