snx4 (snx4,LOC107660619,LOC107741918,LOC107555933,LOC107714137,LOC107673751)


Basic Information

Item Value
gene id snx4
gene name snx4,LOC107660619,LOC107741918,LOC107555933,LOC107714137,LOC107673751
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18721173 ~ 18733013 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249398.1
ACGCGCACAGACTGCCAGTGAAAGAGCGAAAGTGGCTAACGCGCAAGCGCGAGACTGCTACACCATGGCGGATTCAGGAAGCGAGGACATAGCGGTGATTGGAAACACAGATCTGACTCCTTCAGAGTCGGAAAACAACTTAAAGAACACGATGGTTGAAAAGGGGACAAATCTTTTGAAGAAGATGGAGATCAGTGTGGCTGAAGCAGAGAAGAGGACTGGGAAGAATGCCGTCAACATGCAGGAGACGTATACAGTGTATCTTATAGAGACAAGgCCAGTAGATGCTGCATCTGAAGGGACCAATCCTGTCCCAGATTCACTTTGGAGGCGTTACAGCGAGTTTGAGCTCCTCAGAAACTATTTATTAGTTACCTATCCATTTCTGGTCGTTCCACCATTGCCTGAAAAACGGGCTGAATTTGTTTGGCACAAACTGTCAGCAGACAACATGGATCCTGACTTTGTGGAGAGGCGTAGAGTGGGACTAGAGAACTTCTTGCTTCGAGTTGCCTCACATCCAGTTCTGTCCAGTGACAAGATCTTCTATTCGTTCCTCACTGAGGAAAATGGTTGGAAGGAAACCGTGTTTGACACGGGATTTCAAGCGAAGGCCGATTCAAGATTAAAGGCTTTAAATGCCACTTTCAGAGTGAAGAATCCAGACAAGCGATTTGCAGAAATGAAACATTATGGTGATGAGCTGCAGTCTGTTATTTCGCAGCTGCTGAGAGTTCGGGCGAGAGCAGCTGATCGCCTGTATGGAGTCTACAAAGTGCATGGAAATTATGGAAGAGTCTTTAGCGAGTGGAGTGCCATTGAGAAAGAGATGGGAGATGGGCTGCAGAGCGCCGGCCATCACATGGACGCGTATGCTGCTTCTGTAGATGATATTCTAGAGGAAGAGGAGCATTATGCTGATCAACTGAAGGAGTACCTTTTCTATGCAGATGCATTAAGggcAGTGTGTAGGAAGCATGAACTGACACAGTATGAACTAGAGATGGCCGCCCAGGATCTGACCTCTAAGAAACAGCAGCGGGAGGAACTCGCCACAGGGACGATACGGACCTTCTCCCTAAAGGGAATGACCAGTAAACTATTTGGACAAGAGACTCCAGAGCAGAGAGAGGCCAAGCTGAAAATGCTGGAGACACAGATTGAAGAAGGAGAGGAACTGgtcaaagaaagaaacacagaaTGCGAGGAGTTTGTGAAAAGTGCTTGGGTGGACATTGAGAGGTTTAAAGAGCAGAAAGACCATGATCTCAGAGAGGCTCTCATCAGCTATGCCATCATGCAGATCAGCATGTGCAAGAAAGGAATTCAAGTGTGGAACAACGCTAAAGAGTGCTTCAGTAAGATGTGAGGGTTCCATCCACAACAACCAGAACACCAGGAGGCCTTGGACATGTCAATCCAGAAAAGCACACACTCCTAAAGACTGACCTTGGGGACTAAAGTCTTCCTCtcaattcaaaacatttgtcAGCCTCTTGCACCAGATGCTCTGGTGTAAGTGGGTATCAATTACACTAGTTTAAGAATccaaataatgaatgaatggggtgctgttttatttatttccatgcTCATGAGCCAGATTTTAGACCTGGTTACTTTTGTTACTGCACTAATTTGACCTACACAAGAGATTGTGAAGGTAACGTACAATTCTTAACACTTCAGACAGCAACGGACAATGACTtaacacagaaacaaaagaaTGACTTAATTAGTATTGATTAATCTTTAACTATGGAATCAATTCTGTATAATTTCCTAATGTCTTTTCCTTTATGCTTTTTGAtgccaaaatgtttaaaatcattccttttttttttttttttttacttcactttTTACTACTTCAGTTTgccataaaacacaaaagcacagaTTAAAACTGTCAAGGCAAAATAAGAGGGTGGGTTTTCTTAGTCAATACAGCAGTTCCATTTTTATCGTACCCCACACCCCTTCTCATAATGGTGGTCTCGCACATCTGGAACGTGTCCAGTTTCTGTGGAACATGCAAAATGATCTTTATCACCTGGCGCAGAGGACACCAAAATTTTCTATGAAAGTAACTTGTCTTATTCGCATGCAAACTAAATTTGCCCTGACGCCCACACAGCAAACAAAGTGGCATAAATTCATCATAACGTGCTGGTCTGTCACTTTTCTGCACATACAGCCATAAAAACATAAGCTGTTTATGACCACCGATCCCCTCCCTTTATATGGTTCAGTTcatctgaaaaatattaatatgctgtttATGCCTTTTTCAAGACTTAACTCTGCATATTTTCTTTGTTGCTGCAGTTTCCACTATGAATGCCATATTTGTCATCTGTTATGAGTGGGTGGGTCAGTGTTTTGATATAAATTTGGCTGAAGGAACACGAAGGTCACAGGAAAGGCAGGATATAATAATTTCCTCATTTTAGAGCTGCATGTGTAACTCAGCCTGACCCCGGGTCATTCAGataatttcttttttggtttaaaGCGGGGCAGAGATAACACTTTTGTATATATACTGTTAAATCTGTTGTGTAACACTAATggtaatgataataaaaaaaaaataccatta

Function

symbol description
snx4 Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within protein transport. Is expressed in notochord. Orthologous to human SNX4 (sorting nexin 4).

NR:

description
PREDICTED: sorting nexin-4 isoform X2

GO:

id name namespace
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17919 SNX4; sorting nexin-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249398.1 True 2602 mRNA 0.42 14 18721173 18733013

Neighbor

gene id symbol gene type direction distance location
osbpl11 LOC107741915,LOC107555931,LOC107660623,LOC107596076,LOC107714164 coding upstream 12980 18692575 ~ 18708193 (+)
lss lss,LOC107714200,LOC107673746,LOC107660663 coding upstream 38971 18675151 ~ 18682202 (+)
LOC122351791 LOC107555929,LOC107660624,LOC107741913,LOC107714185,LOC107673745,LOC107596074 coding upstream 46435 18663351 ~ 18674738 (+)
LOC122351850 LOC107555927,LOC107660626,LOC107741910,LOC107714212,LOC107660625,LOC107596087 coding upstream 58303 18659765 ~ 18662870 (+)
LOC122351848 cyp27a7,LOC107741910,LOC107660625,LOC107714212,LOC107660626,LOC107555927 coding upstream 63463 18653071 ~ 18657710 (+)
znf148 znf148,LOC107673743,LOC107660621 coding downstream 1406 18734419 ~ 18740056 (+)
slc12a8 slc12a8,LOC107741923,LOC107660618,LOC107673744,LOC107714115,LOC107555904 coding downstream 9797 18742810 ~ 18760266 (+)
heg1 LOC107555935,LOC107741920,LOC107660617,LOC107673741 coding downstream 27447 18760460 ~ 18771739 (+)
kansl1l LOC107741922,LOC107660662,LOC107555936,LOC107596092 coding downstream 40747 18773760 ~ 18791366 (+)
map2 map2,LOC107673740,LOC107555937,LOC107741924,LOC107660616,LOC107596094 coding downstream 60068 18793081 ~ 18884325 (+)
G71334 NA non-coding upstream 177175 18543774 ~ 18543998 (+)
G71333 NA non-coding upstream 179837 18540883 ~ 18541336 (+)
G71331 NA non-coding upstream 182473 18538480 ~ 18538700 (+)
G71221 NA non-coding upstream 690625 18028361 ~ 18030548 (+)
G71167 NA non-coding upstream 1078735 17641910 ~ 17642438 (+)
G71442 LOC103022703,LOC103363874,LOC107673729,LOC107721018,LOC107596080,LOC107660614,LOC107555938 non-coding downstream 14898 18747911 ~ 18892052 (+)
LOC122351431 NA non-coding downstream 156910 18889923 ~ 18893969 (+)
G71457 LOC107662043,LOC107555909,LOC107741926,LOC107556197,LOC107660610,LOC107721020 non-coding downstream 247300 18980313 ~ 18985811 (+)
G71509 NA non-coding downstream 517826 19250839 ~ 19251157 (+)
G71517 NA non-coding downstream 523017 19256030 ~ 19256233 (+)
lmln lmln,LOC107741941,LOC107555912,LOC107673747,LOC107596075,LOC107714369,LOC107660656 other upstream 31631 18682672 ~ 18689542 (+)
plcd4b plcd4b,LOC107741909,LOC107673750,LOC107714237,LOC107660629,LOC107596071 other upstream 78687 18635106 ~ 18642486 (+)
tfcp2l1 tfcp2l1,LOC107673739,LOC107714264,LOC107596086 other upstream 101786 18611995 ~ 18619387 (+)
clasp1a clasp1a,LOC107741904,LOC107555920,LOC107660633,LOC107673735,LOC107714287 other upstream 110245 18549936 ~ 18610928 (+)
lrp1bb lrp1b,LOC107661145,LOC107660661,LOC107746259,LOC107714450 other upstream 756929 17736006 ~ 17964244 (+)
cps1 cps1,LOC107660611,LOC107741925 other downstream 163589 18896602 ~ 18931462 (+)
vwc2l vwc2l,LOC107660607,LOC107657506,LOC107714362,LOC106586444 other downstream 779841 19512854 ~ 19543677 (+)
G71585 NA other downstream 888271 19621284 ~ 19621493 (+)
ormdl1 ormdl1,LOC107602148 other downstream 976351 19709364 ~ 19714404 (+)
si:dkey-10c21.1 NA other downstream 1480382 20213395 ~ 20218120 (+)

Expression


Co-expression Network