idh1 (idh1,LOC107663883,LOC107698523)


Basic Information

Item Value
gene id idh1
gene name idh1,LOC107663883,LOC107698523
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11089670 ~ 11096681 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249406.1
GATTGAAGAAGTACATGCATGAGCAGATCTGGAGAGAGCCTATGCCATCGGCTCAGCTGATAGGAAACAACGCCTTCCAAGACTAGTCCAAAAGCCTTCAAGCTCCACATCAACCACCCGATATCTTTCCATTTACTCCAGTACAAGCTCAAAAGAAAAGGCTCCAAAATGTCCCAGAAGATCAAAGCGGGTTCTGTGGTGGAGATGCAGGGAGATGAGATGACCAGAGTAATATGGGAGCTCATAAAAGAGAAACTCATTTTTCCATATCTGGAGCTCGACCTACACAGCTATGACCTGGGAATGGAGAACCGCGATGCCACCGATGACAAGGTGACTGTTGAGGCGGCAGAGGCTGTGAGGCGCTTCAACGTCGGCATCAAGTGTGCCACCATCACTCCTGACGAGAAGCGCGTGGAGGAGTTCAAGCTCAAGAAGATGTGGCGCTCTCCCAACGGAACCATCCGGAACATCCTGGGTGGCACTGTGTTCAGAGAGGCTATTATCTGCAAGAACATTCCCCGCTTGGTTCCCGGCTGGATCAAGCCCATAATTATTGGCAGGCACGCACATGGAGACCAGtacAAGGCCACAGATTTCGTTGTTCCCGGTCCTGGTAAAGTGGAAATGACATACACGCCTAAAAATGGAGGAGAGCCGCTCAAGTTTGTTGTCCATGACTTTGAAGgtaCTGGTGGAGTTGCTCTGGGGATGTACAACACAGACAACTCAATCCGGGACTTTGCTCACAGCTCTCTCCAGATGGGGTTGAACAAAGGCTGGCCAGTGTACCTCAGCACCAAAAACACCATCTTGAAGAAATATGACGGCCGCTTCAAAGACATTTTCCAGGAGATCTATGACAAagAGTACAAGGCTCAGTATGATGCTAAAGGTATCTGGTATGAGCACCGGCTGATTGATGACATGGTGGCTCAGGCCATGAAGTCTGAAGGTGGGTTTATCTGGGCCTGCAAGAACTATGATGGAGATGTGCAGTCAGACTCTGTAgctcaggGTTATGGGTCACTGGGTATGATGACCAGCGTGCTCGTGTGTCCTGATGGCCGTACAGTAGAAGCTGAGGCAGCCCATGGCACCGTTACACGACACTATCGCTTTCACCAGCAGGGCAAAGAGACGTCCACCAACCCTATTGCCTCTATCTTTGCATGGACGCGAGGGCTGCTGCACCGGGCCGAGCTGGATAAGAACGCAGAGCTTCGGGTGTTTGCTGAGGCGCTGGAGGCCGTCTGCGTGGAGACCATTGAAGCCGGTTTCATGACCAAGGACCTGGCCATCTGCATCAAGGGCATGTCTAGtgttgcgCGCTCTGATTACCTCAACACTTTTGAGTTCTTGGACAAACTGGCCGAGAATCTGAAGATGAAGTTGTCAAGCCAACCCAAACTGTAAAGCTGCTGGGTGTCCACGGGGcgttcacacacacgcacactctgACACTCAACCCACCTCAAAGCGCAGACTCCGCTTCTTTAGTCTCATTTTCTGTCTTAACTGGGACCAAAGGCAGAGAAATGATTGACTTCACCACTACAGCCAGTAGGGGGAGCAATGCACTTTCAACTGGACGTCGAAAGTGCCCTTTTTAATGGAAGGAGCCGGTGTAACTttcattatgattttaaaaacaaatgacaaacattcatatattagACTGTATCACTGTTTAGGCGGTTTTATCATTGCAACGGTTGTTctcattgaaaaatatattccCTGTAGtgcataaatgtgtattttgtgcTACTGCTATCTCTCAGGTGCACGAACACCTGTTGCCTTATTGTCTGCGTGTCTAGTAGTCTTGTCTTCGGGCAGCTTCTCTGGAAGCCGTCCGAGAAACAGTGAGATTAGGTCTTAACAATGTAAATACCTGCTTTTAACTGAAACACTGGTAGTTTACACCAGTAGACATTCCTGTTCGTTCTACACTTGTATCAGTGTCTGTCaatgcattacaaatgattttccTTATATGGTTCTGTTTATGTCAGTCTGTGTGCTCACGTGATCGGGTCTTGGGTTATTTTGACATCAATAATAAATGAGACTTTTTAAGAAGAA

Function

symbol description
idh1 Predicted to enable isocitrate dehydrogenase (NADP+) activity. Acts upstream of or within hemopoiesis. Predicted to be active in cytosol; mitochondrion; and peroxisome. Is expressed in several structures, including digestive system; ectoderm; mesoderm; nervous system; and pronephric duct. Human ortholog(s) of this gene implicated in autoimmune disease; hematologic cancer (multiple); hepatocellular clear cell carcinoma; and high grade glioma (multiple). Orthologous to human IDH1 (isocitrate dehydrogenase (NADP(+)) 1).

NR:

description
isocitrate dehydrogenase [NADP] cytoplasmic-like

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006102 isocitrate metabolic process biological_process
GO:0051287 NAD binding molecular_function
GO:0004450 isocitrate dehydrogenase (NADP+) activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K00031 IDH1, IDH2, icd; isocitrate dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249406.1 True 2088 mRNA 0.48 9 11089670 11096681

Neighbor

gene id symbol gene type direction distance location
plekhm3 plekhm3,LOC107733641,LOC107551948,LOC107663884,LOC107598165,LOC107698528,LOC107738519 coding downstream 3760 11051094 ~ 11085910 (-)
fzd5 fzd5,LOC107551950,LOC107733649,LOC107698527,LOC107598163,LOC107738508 coding downstream 44208 11041292 ~ 11045462 (-)
zgc:162396 zgc:162396,LOC107551942,LOC107733630,LOC107663909,LOC107568094 coding downstream 253700 10833262 ~ 10835970 (-)
zgc:162780 zgc:162780,LOC107551941,LOC107566157,LOC107738501,LOC107733635 coding downstream 256554 10829914 ~ 10833116 (-)
LOC122351611 LOC107733620,LOC107663814,LOC107555196,LOC107720141,LOC107600416,LOC107655476 coding downstream 480279 10606194 ~ 10609391 (-)
armc8 armc8,LOC107598169,LOC107551954,LOC107733643,LOC107663904,LOC107738509 coding upstream 97012 11193693 ~ 11204968 (-)
rab5b rab5b,LOC107551955,LOC107738511,LOC107598172,LOC107698530,LOC108430508,LOC108266395 coding upstream 113519 11210200 ~ 11216654 (-)
lcmt2 lcmt2,LOC107663870,LOC107698535 coding upstream 129275 11225956 ~ 11231688 (-)
tlr20.4 tlr20.2,tlr20f,LOC107598181 coding upstream 289696 11386377 ~ 11389378 (-)
LOC122351856 tlr20f,tlr20.2,LOC107598181 coding upstream 295559 11392240 ~ 11396663 (-)
G69396 NA non-coding downstream 59177 11029377 ~ 11030493 (-)
G69362 NA non-coding downstream 135685 10947044 ~ 10953985 (-)
LOC122351427 NA non-coding downstream 142926 10930480 ~ 10946744 (-)
G69361 NA non-coding downstream 144615 10944439 ~ 10945055 (-)
LOC122352018 NA non-coding downstream 181076 10849823 ~ 10908594 (-)
G69467 NA non-coding upstream 262269 11358950 ~ 11365819 (-)
LOC122351998 NA non-coding upstream 694100 11790781 ~ 11954234 (-)
G69596 NA non-coding upstream 989033 12085714 ~ 12156439 (-)
LOC122351183 NA non-coding upstream 1171431 12268112 ~ 12270147 (-)
G69607 NA non-coding upstream 1183112 12279793 ~ 12280197 (-)
mrasa LOC107551943,LOC107663912,LOC107733654,LOC107600440,LOC107738526 other downstream 403043 10680158 ~ 10686627 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other downstream 570213 10515272 ~ 10519457 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other downstream 646051 10433507 ~ 10443619 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other downstream 1179492 9908188 ~ 9910178 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other downstream 2994823 8076468 ~ 8094847 (-)
LOC122351858 slc10a2,LOC107663831,LOC107567642,LOC107675341,LOC107738529 other upstream 299985 11396666 ~ 11493120 (-)
LOC122351308 si:rp71-84d19.3,gtpbp8,LOC107663822,LOC107567641,LOC107738531,LOC107733632,LOC107598183 other upstream 400266 11496947 ~ 11500495 (-)
gtdc1 gtdc1,LOC107709416,LOC107555857,LOC107563182,LOC107675364,LOC107673117 other upstream 994450 12091131 ~ 12194961 (-)
G69650 NA other upstream 1325748 12422429 ~ 12423446 (-)
lrch1 lrch1,LOC107709425,LOC107601076,LOC107673127,LOC107724026 other upstream 1421603 12518284 ~ 12582425 (-)

Expression


Co-expression Network