pou1f1 (pou1f1,LOC107561319,LOC107688653,LOC107661330,LOC107551978)


Basic Information

Item Value
gene id pou1f1
gene name pou1f1,LOC107561319,LOC107688653,LOC107661330,LOC107551978
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 2899163 ~ 2908133 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249416.1
GGCACACAGGTGAACACCTCGAGTCATGACCTGCCAGGCCTTCAGCGGCGCCGGCGATTCCTTCAGTGCGCTGAGCGGGGACCCGGCCGCTCTGCCTCTGCTCATGCACCATCACGGAGGAGCCGCCGACTGCCTGCCCGTCACCAGCCACACCGCCAGCATGGTGCCTTCAGCGTTGCTCCCCGCAGGTCTGCCGCTGGTCCAGTCGTCCAAACGCTCTCACATGCACCTGTCCACTTCCGCTTTGGGCAACGCCTCGGCCAGCCTGCACTACCCGATGCCCCCCTGTCACTATAGCAACCAGCAGACCACCTACGGCATGATGACAGCACAGGAAATGCTCTCAGCCAGCATCTCCCAGACCCGCATCCTGCAGACCTGCAGCGTGCCTCACGCCAACATGGTCAACGGAGCCAACTCGCTGCAAGGAGCTCTGGCTCCTCGCCTCTATAAGTTCCCAGAGCACAGTTTGGCTGGGGGCTCCTGTGCTCTGACCCACAGCTTACCTCCGCTGCCCCAGGCCCTGCTCTCGGACGAGCACACCCTGGGGGACATCAAGCAGGAGCTGCGCAGGAAGAGCCGGCCCCTGGAGGAGCCGCCCGACATGGACTCCCCTCAGATCCGTGAACTGGAGAAGTTTGCTAACGACTTCAAACTGAGGAGGATCAAGCTAGGTTACACACAGACCAATGTGGGTGAAGCCCTGGCGGCCGTGCACGGCTCTGAATTCAGCCAAACCACCATCTGCCGCTTCGAGAACTTGCAGCTCAGCTTCAAAAACGCCTGCAAGCTCAAAGCCATCCTGGCAAAGTGGCTGGAGGAGGCTGAGCAAGCCGGTGCTCTTTTTAATGAGAAGATGGGCATGCACGAGCGTAAACGCAAACGGAGAACAACCATCAGTCTTGGGGCTAAGGAAGCCTTAGAAAGGAATTTTGTGGAGAAGAGTAAGCCGTCATCTCAGGAGATCGTGCGGATGGCGGAGGGCCTCCATCTGGAGAAGGAGGTGGTGCGTGTTTGGTTCTGTAACCGGCGGCAGAGGGAGAAGAGGGTCAAAACCAGCCTACACCACAGCTCCTTCATGGCCAAAGAGACCGTGGCCTGTAGACCCTGAAGGTCCAGGGCCTCAGAGACGCTGATGCGCGATTATCTACAGGCAAAAAAACCAGCAGCAGCCTTCGGCGGTGAGTGGGTTTATTGTACCGATTCACCAGCAGGACGACTGGATATGCCGTGACCTCGGAAAAAGTATTTgaacacacttaaaaatatctCACCACCAATTTGTACGCTTTTTATGAGGTGGTTAATTCGTACGACCTCACTCCCACGATTTTGTACGATTTGTCTagacgggtaggtttaggggcggggttaggCGTAGGTCgttcgtacaaattcatacgattTAGCACAAATGGTATAACATGCACGATTTAGCACAAATCGATAGAATTCGAGTGAGGATTAGCCGCCTCGTAAAAGATATACGAATTGCTGTGAGATCAGTATCAAAAAATCGAACTGAGTGACACGTTTGAAAGAGGTCTCGTATTTAAAAGATGTATGAAGTCAGTTCTTCTCAGGTTCACGCAGGAGTCCTAATAATGTCACAGTATGAATGGGTTAAGATAAATGCCAGTCGGTTTGATATTGTGTCATGGAATGGCCTTCATAGATTATAGGGGGTGCTTTTAGTGTCAcacaaatgttattattttattttgttaatttttattatttttttactttaatattaaattaaaggttaTATGATTCAGCGACATTTATAATTAGTGTCcaaattctatttaatttctttaataaataaagcaatttaaGCAACCTTTTCACTGGAAATTACACTCGAGCTATTAAATCtcgatacttttttttttaatatttaaaataatttattcatcattaatatatttaaatgcattccaATCAAAGTTTAATATATTAGCGAAATGTTCTGAAAGCATATCCTGGAAATGTGTcattgcactgtagagttttgtACGAAGCAAGCGAACC

Function

symbol description
pou1f1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within cell fate specification. Predicted to be located in nucleus. Is expressed in adenohypophyseal placode; adenohypophysis; brain; and hypophysis. Human ortholog(s) of this gene implicated in panhypopituitarism and pituitary gland disease. Orthologous to human POU1F1 (POU class 1 homeobox 1).

NR:

description
pituitary-specific positive transcription factor 1

GO:

id name namespace
GO:0001708 cell fate specification biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09363 POU1F, PIT1; POU domain transcription factor, class 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249416.1 True 2034 mRNA 0.49 7 2899163 2908133

Neighbor

gene id symbol gene type direction distance location
nr4a2a nr4a2a,LOC107657406,LOC107734489,LOC107745273,LOC107572156 coding upstream 399865 2494481 ~ 2499298 (+)
LOC122351218 cytip,LOC107745276,LOC107567979,LOC107685429,LOC107734494,LOC107657378,LOC107548784 coding upstream 640548 2254557 ~ 2258615 (+)
LOC122351505 LOC107734497,LOC107657409,LOC107548806,LOC107685428,LOC107745260,LOC107567977,LOC107657408,LOC107734493 coding upstream 697449 2145505 ~ 2201714 (+)
ndufa4l2a ndufa4l2a,ndufa4l2,LOC107678808,LOC107571901,LOC108434410,LOC100690915 coding upstream 1033556 1861809 ~ 1865607 (+)
LOC122351375 ccdc148,LOC107568893 coding upstream 1210694 1660010 ~ 1688469 (+)
vgll3 LOC107561316 coding downstream 18233 2926366 ~ 2930420 (+)
kctd4 kctd4,LOC107748885,LOC107688678,LOC107713709,LOC107580010 coding downstream 57913 2966046 ~ 2967965 (+)
tsc22d1 tsc22d1,LOC107551985,LOC107748883,LOC107713726,LOC107576221,LOC107561310,LOC107688650 coding downstream 70174 2978307 ~ 3016509 (+)
enox1 enox1,LOC107661308,LOC107713727,LOC107561323,LOC107688647 coding downstream 146229 3054362 ~ 3137945 (+)
epsti1 epsti1,LOC107549908 coding downstream 455601 3363734 ~ 3384177 (+)
G67187 NA non-coding upstream 244687 2641619 ~ 2654476 (+)
G67097 NA non-coding upstream 766767 2131962 ~ 2132396 (+)
G67065 NA non-coding upstream 812358 2086282 ~ 2086805 (+)
G67064 ndufa4l2a,ndufa4l2,LOC107678808,LOC107571901,LOC108434410,LOC100690915 non-coding upstream 812985 1861854 ~ 2086178 (+)
LOC122351269 NA non-coding downstream 9709 2917842 ~ 2924636 (+)
LOC122351258 NA non-coding downstream 47211 2955344 ~ 2957198 (+)
G67296 NA non-coding downstream 144361 3052494 ~ 3053222 (+)
G67347 NA non-coding downstream 477497 3385630 ~ 3385950 (+)
G67348 NA non-coding downstream 478839 3386972 ~ 3387192 (+)
bpifcl bpi other upstream 1162843 1713812 ~ 1736320 (+)
G66795 NA other upstream 1764174 1127526 ~ 1134989 (+)
LOC122351650 si:ch1073-55a19.2,LOC107670647,LOC107709149,LOC107686982,LOC107559216,LOC108440489,LOC107686979,LOC107709150 other upstream 1999784 858680 ~ 899379 (+)
G66727 fam126b,LOC107700963 other upstream 2094154 797133 ~ 805009 (+)
G66657 NA other upstream 2437134 459574 ~ 462029 (+)
LOC122351419 polr2e,polr2eb,LOC107592678,LOC107669821,LOC107599482 other downstream 286640 3194773 ~ 3196618 (+)
LOC122351398 dnajc15,LOC107549910 other downstream 354474 3262607 ~ 3280052 (+)
LOC122352174 rbm45,LOC107716918,LOC107752596 other downstream 1005505 3913638 ~ 3922878 (+)
G67566 LOC107742952,LOC107718452,LOC107671286,LOC107715667 other downstream 1039903 3948036 ~ 3983582 (+)
cdca7a LOC107718452,LOC107671286,LOC107588247,LOC107742973,LOC107657370,LOC107600694 other downstream 1073213 3981346 ~ 3985962 (+)

Expression


Co-expression Network