sh3bp4 (sh3bp4,LOC107684539,LOC107555364,LOC107723680,LOC107658300,LOC107555062)


Basic Information

Item Value
gene id sh3bp4
gene name sh3bp4,LOC107684539,LOC107555364,LOC107723680,LOC107658300,LOC107555062
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13609427 ~ 13622795 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249422.1
ACGGTGTATCTTGGCCTAGCGTTAAAAAGCTGTGAAGAGTGCCAGGGTTTGTCCGTGCTCTCGCGCGGGACTCCTCCTGGCTGGTGACGTCACGCCGCGTCTCCTAATGTAAGCGAGGCGCTCGAGCTCGAGGCGCGCGCGTAACGGTCCTCACTCATGACGCCGACCGCATCTTCAAACAAATATTATGGAAGTCCATTGATCTCtcacactgaaacaaaaatgggAAGAAAAACGTGAGACAAGAAGTGGAGTTTGGAAGCATTACACACCATGGCTGCCCATCGCATTCGATCAGCGAACAACAATGCTGTGCTCCCTCGTTGCAGATCTGAGGGGGCTCTCATCGATCTCAGTGAAGGAGTGTCAGAGGCCACCCTTacagatgttaaagTGCCTTCACCTAGTGCCTTACGACTGGATACTACTGCCTCATTTGGAGCTGTCAGGGAAGTGATTGCCATTAAGGATTACTGTCCATCCAGTTTTACCACCCTCAAGTTCTCCAAGGGAGACTGTCTTTATGTTATAGACACCTCGGGTGGAGAGTGGTGGTATGCACACAACAGTAAAGAGATGGGATACATCCCAGCTGCTTACGTCCAGCCACTTAATTATCGAGATTCCACATTCAGTGATAGCGGCATGATTGACAGCCTAAGTGATATTTCTGAGGGAATGAAAGAAATGGATATCTCTGGGGAGTGGACGGGGTCCACCAAAACCACAGAATCTAAAAATGACAATCCTTTTGTTAATAAACGTATGTCAACTAACCCTTTCCTAAATGGCTCGCTGCAAAGCACCCCTGACCAAAACAGCAACCAGAATTTAACAAAGGCTTTGTGTTTTAGTAATCTCTCACCTCCCATTTCAAACACCAGCAgcactattaatattaatggttTTGAAAGTGGGCTGTTTGACACAAAAAGTATTAGCCCTGGCTCAGAAATTGGCCCAAGTTTCCGCAGAGATAATCCATTTTTTAGGAGCAAACGCTGCTACAGCATGTCAGAACTGTCTGTCCTACAGGCCTTGTCTGATGGGAATCAAGGTTCCTTGAGTTTTTTTGGTGGAATGAAGTCACCTAAACCTGAACATTATCAAAGCAGAGATGATTTCAAAACAGCATGGCTAAATCACCGTAAACTTACACGATCCTGCCATGACCTGGACTCCATTGGACAAAACCCAGGTTGGGGGCAAACCCAGCCAATAGAGACCAACATTGTGTGCAACCTGGACAGTTCTGGTGGTGCCGTGGAGCTGCCAAATACCAGTATCAGTATACATATTCCAGAGGGTCATGTTGCATCGGGTGAGACTCAACAGATATCATTGAAGGCCCTTCTGGACCCACCTTTGGAGCTTAACAATGACAGATGTACTACCGTAAGTCCAGTGGTAGAAGTAAAACTCAGTAACATGGAAACCAAGACCCCAGTCACTTTAGAGATGAAGGTGTCTGTTGTAGTGAAGATAGAGAGCCGCAAAACCACAGaggtggtgtgtgtgagaagcGACTTTAAGGAAGGTCCATATGTCCCAATTCCACATGTGTACATGTATGGAGACACCGTTCAAGTGACTCTGGACAATTTAGAGCCTTGCATGTACGTCTCTGTAGTTGCCCAAGCACAAACGGTGGCCCCATACAACACTGTCTGGGAACATGTTGTAAAAAAGGTCACTCTTGGTGTATACGGCCCAAAACACATCCACCCGTCCTTCAAGACAGTGGTGGCcatttttggccatgactgtgcCCCAAAGACACTACTAGTGAGTGACACAAAAAAGCACTTACAGTCAACTCCTCCTGTTGTCCTTCAACTGTGGGGAAAGCACCAGTTTGTACTTACAAAACCTCAGGACCTTCAGGTTGGCGTGTATTCGAACATGTCAAATTTTGAAGTGAGAGCCAATGAACAGGCAAGGACCGTGAGGGGATTTCAGATCAAACTTGGCAAAGTGGCCCGCCTCATCTACATGATCGCAGCACGTGATTCAACTGACATTTCAGACTTTACTTTGCGTATTCAGGTCAAGGATGATAAGGATTGTATCTTGGCCCAGTTTTGCGTTCAGACCCCAACCCCACCACCAAAAACAAGCACAAGAAGCTCCGTTCAAAGGCGCTTCCTCAAGAAAAAGGAAGTAAACAAAATCATACTGTCTCCTCTTGCAGCGACCGCAAAGTACCCTGTGTTTCAGGACAGACTGGTCAAAAACCTAAAATTTGCTAAGTTTGTTAAAACTGTTGTAAGACAGTCCAAAAGCCTGTACTTGCTAGAGTATCTTAAAGGTGATGTAGTGGCCCTTTTGagtgaggaaaaaataaaactgaaagggCATCTATGGACCAAAGAGTGGTACATTGGATATTACCATGGAAGAATTGGGTTTGTGCATGCAAAAAACATTCTTGTCATGGGAAAAGTGAAACCTCTTAATTTCAAAGGGTCTGATCTTACAACTACAATCCTTTTAGAGCAACTCCTAAAGCCCTGCATGTGCCTGACGTACATCTACGCATCTGTGCGGACAATACTGATGGAAAACGTGGCGAGTTGGAGGGTGTTTGCTGACGCTTTGGGCTACGTCAATCTGCCTCTGACATACTTCTGTCGGACAGAGGCAGAAAGTGAGCCTGAAAAAGTTGCTTCTGTTCTTGAGAAGCTTAAGGAAGACTGCAACGCAGCTGAGGGCAAGGAGAGGAAGTCTTTCCAGAAGGAACTCATGAAGGCTCTTCTGAAGATGGACTGTCAGGGTCTGGTGGCACGGCTGGTCATGGACTTTGTGCTGTTGACTACAGCGGTGGAGGTGGCGGGACGCTGGAGGGAGCTTGCTGAGAGACTGGCTAAAGTGTCCCGGCAGCAGATGGAAGCGTATGAAGCTCCACACAGAGACAGCAGGGGACAACTGGACAGTGAgGCCATGTGGAAGCCTGCCTATGACTTCCTGGTCACGTGGGCATCCCGGATTGGGGACAGTTACAGGGATGTGATTCAGGAACTTCACACTGGATTGGACAAAATGAAGAACCCTATTACCAAGCGCTGGAGACACATCACAGGCTCCCTCATCCTTGTCAACTGTCTGGATCTCCTACGGAGCTCTGCTTTCAGCCCCTGCTCTCAAGATGACTGCGCCATATAAAGACTGCATACTGCCAGAACCACTTACACCTGATTTCAACTTTATTCATTGTGTGGtttttaatattcttaaaaGCACTTAGATGTTTTGCACAATAGATGCACAGTAAATTGTACACTGAACCGAATTACTGAAAAGCGTAGGCCTGTTACTGGTGTtttaatacgattttaaaatcTTCGTGTAAAATAAGACatgattgttttattcattgCATATCGTCATGATTTTATACTTGTATATTTTGCACAAAAGAAACACTTTTACATACCAGTAAGTTTTTTCACTAATACTGTAACAATCTTACTGttttatgctttgttttgtgATGACAACACCGTATGCTAAACTGCCTGTTTTACTTTGCTCTAAATGTCTGTTGTTTAGTTTAAAGTAGTTTAAAGTAGCCAATGTGTAGCCAAAATTaagatggaaaaataaaacattatcagCTTAATAAAGAGATACACCACATATTAGAGTAATGGGATCGCTGTAGGgcagttgtaaataaaatgtctcaaagtaaagtaaagtaagcATTTGCTCACCATTAATGTGTTACGCTGGGGGCGGACCTTTtgctttttgatcattttagtgTTATTGAATTTTACACTTACAGTTTACGGGATGCAACGGAAGTCGAAAGTTTTTTGCACATGCTTCTAGTATGCTTCGTTACGGTGCGTGCAAATTAATGCCGTCTcatctttataaaaatataggTCTACTATCAAGATTTCTGACGAGTGACTCTTCTTTGATGTTGATatcaaattatgattttaatttgtgcaGAATATACGAAGATAGCCGAAAAACAGTTATTAAAACAGTTGATTGTGATGATGGCCTAATTCCAAAAAGCACAGTTTTCCCcgaaaatgcacattatatttaaaagatgtAGTTTGTTGTTCAAAGGTAAGGTCCATGCGAATTCAGTGCAAATTTATCCGTTGAACGCgttattcaaaatgaaaacaactcATTGAATTTCTATATTGTCACTTTGAGTAAAAATGTagttatgtattatgtataaacTAGGCCTAATGTTAAAACTAAACCTTTTGGAAACGTTATAAATGTGGTCAGAGCTAACAGCTGTCCTGTTTTCCTAGCTTCCTATCATGTCTTGCACAAGATCACAGCACGTAACAACAGATTTGCTTTGTGGATTTTACTGTAATGtcataaaatgaacacattaaCATCACTGACATGCTGAAAGTAATATGTTATTTCTCTCCACCTTTCCTCAGAAGAGCTTACGTATCAAGTTGGCTACATGTTTGTAGAGTTACGAGTATAGCGGATAGGATGTCCTTGATGGGATGACTTTGTGTGACAAAACTGACTTAAGTACATTAATCCAGTCGCAGTTAAAGTGTAACATTGAACGAGTTTTCTTCTTGCTGTGCTCACTGAGAGTTTTACCAACTTACTTGCTATGTGAAAATTCCAGTCTTATCACTCCAGTATAATTTTTCTCGCTGCCTGACAGGCTTTCCCAGCAAAAATGATGACCAATGTAAACAGTTATCACTGTGGGTCTTGCAAAAATACTCTTACATCTTCTCACACTGAGGACACAGGCATGCAGACATGCATAGTTCACAACACAAGCCTTTCATCAGTgccctctctcactctctgggGAGAACCCTGGACtaccacaaaaaaagtataatataatgaGCATGTACAGTCAGCGGAAGATTTTATACAGTTGTAACTATTCCACAGATACAGTCAAgcaagtgtgtgtctgtttgttatgATATGCCATAAATAAACTTCTTTTTTGGGG

Function

symbol description
sh3bp4 Predicted to act upstream of or within negative regulation of TOR signaling. Predicted to be located in clathrin-coated pit; clathrin-coated vesicle; and nucleus. Predicted to be active in cytoplasm. Orthologous to human SH3BP4 (SH3 domain binding protein 4).

NR:

description
PREDICTED: SH3 domain-binding protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249422.1 True 4978 mRNA 0.43 5 13609427 13622795

Neighbor

gene id symbol gene type direction distance location
ndufa10 ndufa10,LOC107684997,LOC107567779 coding upstream 148973 13456115 ~ 13460454 (+)
parp9 NA coding upstream 159828 13444255 ~ 13449599 (+)
esyt3 esyt3,LOC107685117,LOC107723684,LOC107695576,LOC107555067,LOC107725232 coding upstream 175443 13425190 ~ 13433984 (+)
trnal-caa NA coding upstream 185601 13423714 ~ 13423826 (+)
wdfy2 wdfy2,LOC107725248,LOC107685482,LOC107723695,LOC107695578 coding upstream 189576 13411787 ~ 13419851 (+)
arl4cb arl4cb,arl4c,LOC107658299 coding downstream 1681 13624476 ~ 13626143 (+)
acmsd acmsd,LOC107723660,LOC107555338,LOC107725255,LOC107555032 coding downstream 48872 13671667 ~ 13675943 (+)
kif5c kif5c,LOC107723658,LOC107684119,LOC107555329,LOC108425929,LOC108266089 coding downstream 73008 13695803 ~ 13713322 (+)
lypd6b lypd6b,LOC107725258,LOC107658295,LOC107683936,LOC107723697,LOC107555360 coding downstream 90976 13713771 ~ 13728818 (+)
lypd6 lypd6,LOC107683855,LOC107725222,LOC107658220 coding downstream 113753 13736548 ~ 13756253 (+)
G69985 NA non-coding upstream 91190 13515689 ~ 13518237 (+)
G69796 stk17b non-coding upstream 475588 13130098 ~ 13133839 (+)
G69789 NA non-coding upstream 501595 13107595 ~ 13107832 (+)
G69783 NA non-coding upstream 502670 13106280 ~ 13106757 (+)
G69723 NA non-coding upstream 769276 12837719 ~ 12840151 (+)
G70021 NA non-coding downstream 46311 13669106 ~ 13669444 (+)
G70029 map3k19,LOC107684057,LOC107723646,LOC107555330,LOC107725236,LOC107658294 non-coding downstream 63001 13685796 ~ 13686466 (+)
LOC122351436 LOC107555330 non-coding downstream 63870 13686665 ~ 13689033 (+)
G70032 NA non-coding downstream 69419 13692214 ~ 13692487 (+)
G70043 NA non-coding downstream 146434 13769229 ~ 13769429 (+)
G69834 col6a3,LOC107685998,LOC107567775,LOC107670696 other upstream 304836 13289693 ~ 13304591 (+)
G69755 NA other upstream 623449 12984868 ~ 12985978 (+)
LOC122351618 clasp1a,clasp2,LOC107741904,LOC107714287,LOC107673735,LOC107596084,LOC107706129,LOC107696541,LOC107669402 other upstream 806019 12732298 ~ 12803408 (+)
G69670 LOC107673130,LOC107555834,LOC107709428,LOC107724029,LOC107675357 other upstream 979892 12627535 ~ 12629535 (+)
epc2 epc2,itm2b,LOC107709422,LOC107724031,LOC107675331,LOC107673124,LOC107709423 other upstream 1157062 12434988 ~ 12452365 (+)
ccnt2a ccnt2a,LOC107658298,LOC107725237,LOC107723659,LOC107684218,LOC107555058,LOC107555362 other downstream 53368 13676163 ~ 13684835 (+)
LOC122351767 NA other downstream 964287 14587082 ~ 14589439 (+)
si:ch211-168k14.2 si:ch211-168k14.2,LOC107681321,LOC107748618,LOC108441415,LOC105905900,LOC108266656,LOC107600399 other downstream 1778332 15401127 ~ 15425361 (+)
LOC122351678 hspe1,mob4,LOC107690609,LOC107595852,LOC107569672,LOC107731766,LOC106586370,LOC105016277,LOC100701317,LOC103156730,LOC101472107,LOC102310674,LOC102783361,LOC108238849,LOC107690608,LOC106582314,LOC105899369 other downstream 2085406 15708201 ~ 15715901 (+)
plcl1 LOC107569711,LOC107731752,LOC107690606,LOC107719808,LOC107659890,LOC107595846 other downstream 2111775 15734570 ~ 15789702 (+)

Expression


Co-expression Network