mlphb (mlphb,LOC107739953,LOC107670700,LOC107695586,LOC107555071,LOC107571729)


Basic Information

Item Value
gene id mlphb
gene name mlphb,LOC107739953,LOC107670700,LOC107695586,LOC107555071,LOC107571729
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13236681 ~ 13251659 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249431.1
TCCCAACCCCACAGTTAATTGGACATGTGATAAACACAGCAGTTGCCTGAAATTGCTCAGCTGAAATCCCACTGGACTACCACAGGCTGCTGAATAAAATCCAGGCTTCCTCATTCTACCGGATGAGATTTAAGATGATGCCCAACAACAGTTATGGGAAGAGTTTGGATCTTTCCAGGTTGACAGATGATGAAGCTAAGCATGTCTGGCAGGTGATCCAAAGAGATTTCCACCTgcgaaagaaagaagagaataGACTAGGgGAACTCAAGACTAAAATAATGAAAGAGGACACCAAAAGAGAGCTGCTGGAATATCAGCCTAAACTCAGTGATTCTCTCTGCATCCGCTGTCTGCAGCCCTTCAAATTCCTTGTCAACAGCAAGCGCCAGTGTCTAGACTGCAAGCTATTTGTCTGCAAGTCCTGCAGCCATTTTAACAAGAAGGACCGCGGTTGGGTTTGTGATCCATGCCACATGGCCAGAGTCCTTAAAATTGGCACACTAGAATGGTTCCATGAGAATGTACGCTCTCGCTTCAAGCGTTTTGGGAGTGCAAAGGTCATGAATTCACTTTTCAAGAGGCTGAACAGTGACCGTGCCAGCTCTCAAACTGACCTCAGAGAGCCTCGAGATGATGACACGCACAGCATGCCTGAAGTTCACaCTGGTTCTCTGTATAGCCAGGAAGATGAGCAGTCTGAGAGGGTCGACAGACGCCACTTCAGCCTGATGAGAAAAGGCAGACGACTACTCCCTGTTGATCCTCTTGATTTTAATCTAGGTGTTGAGAACCCTGCTTATTCTAGACCTCCCATACTTCTGtattcagGTAGCCAAGAGAAAGTAACCCAGAGTAAGGATTCAGTAACTGAAGATGACTGGTCCACAACCTTTAAACAGATCCTGGAGAATGGAACTCATGGTAGAGGTGATGAGATGAAGGACATGTTGCATATCAGCCAGAGAAGTCTGGACAAACCCTTCCATTTTGATGACTGCACACCACATCTAGAACAGAGGATGACAAAATCTCGTTCCCTCTCCAAGATGAGCATCTCTTCAGCTGGCAGTTCTAACTATCACTTCCACCGTGAGCCTTCTTACAGCCTAGAAGACtcagaagatgatgatgaatcTGAGATGCACGTCATATATAGTCACAGGGAGCACTCACCAGATGAGGTTCCTCCACAGATTATTGAGCTCAACAAGCGTATGTCAGCAATCGAAACTCTTCTGAGCTGTTTGGAGCAGAAACTCGTCTTCCCGGGAATTGGGGGATCAGCAGAACAAGTTGAGCATAAAGAGGAGGATCTGTCTCCAGCTGATTTAGAGGAGCTTGAACTCAGAAAAAAGCTTGATGAACTTACTGAAAAAATAAGTGATAAAGGCTCATCTGATGAGGAGGATCCAATGAAGCCTACAGAGGACTCTCCAAAGAAAGGGGTGGTTTATCATGCTTCAGCTACGAGAAGAGCTTCATCTGGACTTGGGAATGTCAGACACGAGTGGCCTCTTGAGGTTGAGTGGaaagcaaagcaaagtgTACCTAAACCCTTAAAAAAGCAGAAGAGGGTAAGGTCCTTAGAGTTTAGCAGCACAACCAGCTGTGAGCTGTCGCAGCTGGAGGGTAAAGTTGCAATGGCAGTGGCCAGCGTCCAGAGCACTCAAAGTGGGGTTACAGACATTCAGAAAAGAATCGCTGCTTTGAGTGCTGCAGGGATGACGGTGGAGACGTCCCGCAGACGGACTCCTCAGTCATCAAGGACATTGCACGAATTTCCAATAAgagGCAGCAATGAAGCAAGATCTCTGCGGAAACTTGTCTTGTGAAGCAGCTTCAGCATACTAGATGTCTTTCATTTTCAGTTGGTCATAATGGTATACAAACTCACAGAACATTTACAGATTAACATAAGCACATTTcatatgttaataaaatcaGCTGCAAGGGCTTGTGGGATTCCCagcttaataaaatgtaattaacatcATTTTTCAGTAGATGACTGTCagattattcttttaaaaaaaaaaagaaaaaagatgtgCCGTTTCTTAATTATGCACACAATAGAAATTGATTGCCTGCATTACACTTATTAACTGTTGTCATTTTGATAAAATCTCagtatttatatgaaaaatagtcaatatttaatatcttaattttagatttatatgtAGTTTctttagtacattttattaaatattgtatctgatatatttttcatatgtgTTGGTTAttttttctg

Function

symbol description
mlphb Predicted to enable actin binding activity and myosin binding activity. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in cortical actin cytoskeleton. Human ortholog(s) of this gene implicated in Griscelli syndrome type 3. Orthologous to human MLPH (melanophilin).

NR:

description
PREDICTED: melanophilin-like

GO: NA

KEGG:

id description
K22235 MLPH; melanophilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249431.1 True 2257 mRNA 0.43 15 13236681 13251659

Neighbor

gene id symbol gene type direction distance location
prlh NA coding downstream 497 13235407 ~ 13236184 (-)
lrrfip1a lrrfip1a,LOC107670703,LOC107571722,LOC107725241,LOC107601083,LOC107739944,LOC107695587 coding downstream 25615 13179504 ~ 13211066 (-)
maip1 NA coding downstream 60147 13173919 ~ 13176534 (-)
pgap1 pgap1,LOC107571728,LOC107601081,LOC107670709 coding downstream 62897 13160284 ~ 13173784 (-)
hecw2a hecw2a,LOC107728295,LOC107670708,LOC107675363,LOC107601080,LOC108425978 coding downstream 78379 13139656 ~ 13158302 (-)
cops8 cops8,trim63b,LOC107723689,LOC107685920,LOC107725246,LOC107695583,LOC106581673 coding upstream 103092 13354751 ~ 13362915 (-)
ints6 ints6,LOC107567782,LOC107685346,LOC107723679,LOC107695579,LOC107725253 coding upstream 148593 13400252 ~ 13410399 (-)
dhrs12 dhrs12,LOC107685263,LOC107723690,LOC107725249,LOC107695571,LOC107555069,LOC107567773 coding upstream 168356 13420015 ~ 13424845 (-)
parp14rs1 si:ch211-219a4.3,LOC107725230,LOC107695575,LOC107555066,LOC107555021,LOC107579587,LOC107754848 coding upstream 182306 13433965 ~ 13444172 (-)
faima faima,faim,LOC107723686,LOC107686598,LOC107725233,LOC107695570,LOC108266416 coding upstream 198211 13449870 ~ 13454850 (-)
LOC122351987 NA non-coding downstream 4471 13228154 ~ 13232210 (-)
G69762 NA non-coding downstream 199228 13035956 ~ 13037453 (-)
LOC122351847 NA non-coding downstream 447547 12787115 ~ 12789134 (-)
G69738 NA non-coding downstream 462829 12773441 ~ 12773852 (-)
G69733 NA non-coding downstream 504938 12731041 ~ 12731743 (-)
G69888 col6a3,LOC107670696,LOC107567775,LOC107739950 non-coding upstream 50744 13302403 ~ 13327413 (-)
G69896 col6a3,LOC107567775,LOC107685998 non-coding upstream 59214 13310873 ~ 13325669 (-)
G69953 NA non-coding upstream 160153 13411812 ~ 13412439 (-)
G70027 NA non-coding upstream 423059 13674718 ~ 13675514 (-)
G70033 NA non-coding upstream 427721 13679380 ~ 13682139 (-)
G69757 NA other downstream 250703 12985124 ~ 12985978 (-)
LOC122352189 NA other downstream 498510 12738044 ~ 12738171 (-)
LOC122351186 adcy5,LOC107555914,LOC107660638,LOC107596066,LOC107661140,LOC106586396,LOC107745452,LOC107668560,LOC107695824,LOC107716189,LOC107568450,LOC108433131 other downstream 515991 12707976 ~ 12720690 (-)
lrch1 lrch1,LOC107709425,LOC107601076,LOC107673127,LOC107724026 other downstream 654256 12518284 ~ 12582425 (-)
G69650 NA other downstream 813235 12422429 ~ 12423446 (-)
gypc gypc,LOC107723681,LOC107725252,LOC107555063,LOC107567781,LOC107684853,LOC107695565 other upstream 221476 13473135 ~ 13495667 (-)
tmem163a tmem163a,LOC107658221,LOC107725256,LOC107684456,LOC107555363,LOC106586306,LOC106582396 other upstream 390644 13642303 ~ 13673807 (-)
G70261 LOC107682829,LOC107723691,LOC107555352,LOC107658202,LOC107555050 other upstream 556163 13807822 ~ 13813327 (-)
rif1 LOC107658288,LOC107555351,LOC107658286,LOC107725242,LOC107680950 other upstream 627911 13879570 ~ 13912943 (-)
G70294 NA other upstream 686600 13938259 ~ 13939868 (-)

Expression


Co-expression Network