tmem237a (tmem237a,LOC107738107,LOC107668390,LOC107752911)


Basic Information

Item Value
gene id tmem237a
gene name tmem237a,LOC107738107,LOC107668390,LOC107752911
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8056543 ~ 8063095 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249446.1
ATTCCCTCCTTGGCAGATGCACGTCTGTGAGGATTAAGCTGAGGATTAGACAGCCTGACGGCACAGCCAAGACTCTCCTCATCTCACACCAACAGCTCCTGCGCCACGACTCCAGCCAGACAAGAAtgggaagaaaacaaacaACAAAATGCCAAGTGTCAAAcccaagaaaaagaaaatcaagaaGGACATCAATGAAGTTGAGGAACCACAAGCGGGGCCCGAGCCAGCTATAGAAATGGAGGATCTGGAGAGCCGGAGAGAGACCCTGACCCCTGAGCCTCAGGACAATCCaccacagaagaagaagaagaaaaagaaggcaCATACTTTTGatgAGAGTGAACAACAGGACCTTCCTAATGGAGATGTTCAAGATCCACATACAGATGATGAAGAAGTCACCAGAAAAAGCAAGAGAAAAAGGAAGGTTAAGATGATGGAAAACCAGTCTCATAATGAGCTCGGCGTGGAGGAGGACGACATAATCACCGATGTGCACGCACCCATATCTCAGCGCTCTCTATTCTCAGCCCCTCTGGGTCACAGTCATCCGATCGGAAAAGTGTTTGTGGAAAAGAACCGCCGCTTCCAGGCGACCGATCGTTTGAATTTATCCCGTGACCATATGGAGGAGTACATGGAAGTCAGGCCAATGTGGAATACACGAGATGTCGCCATGAGGGTCCACAGTGGCTTCAGGATCATTGGACTGTTCTCTCATGGGTTTCTGGCAGGATATGCGGTGTGGAATATCATTGTGGTGTATGTGTTAGCTGGAGAGCAGATGACCACTCTACATAACCTTCTCCAGCAGTACCACAGTCTGGCTTACCCCGCACAGTCTCTGCTTTACCTCCTGCTGGCCATCAGCACCGTGTCTGCCTTTGACAGGGTGAATCTGGCCAAAGCCTCCATGGCTCTTCGGGGTTTTCTCACTCTCGATCCAGCGGCTCTTGCTTCCTTCTTATACTTTGCCGCTCTCATCCTGTCTCTGAGCCAGCAGATGACCAGTGATCGAATACATCTCTACCCCACAGCCAATGAAACGCTTTGGCCCCCGGGTTCAGAACATCAGATTCTCCAGCCCTGGATCGTGGTAAACCTGGTCGTAGCTCTTCTGGTGGGTCTGGCCTGGGTGTTCGTTGCTACACGACCGGACATGGACTACACCGAGGAGTTTTTAATGGCGATGGAGGTGGAGGAGTATCCGCGTCACGATGAGAAAAATGAGCTGGCAGCCTGATACACCCATGCATGatttacatatattaacattgttttgtgttaaatgtcttgaagtaaacattttgtatgttacgttgttgttgttgagctTGTTACATACTGTAgataataaacttttttgttaagTTTCCTGTTTGCCTTTTTTGTTGATCTTCTAAGTGTGTATTTTAGAAGTAcgacttttttttgtctatggATCGACAAGAACTGAATTTACAGTATAGTCATTGAgcaattagaaatgttttgtttaaatgcttttaccAGAAGTATTGTATTGCATATTGCAGGTATTAATTGCAGTAAGTTGCTTTGCATAGAAGCTACTAAAATTGTGTGCTAAATTAATAAAGGCAAATAAATATAGCA
>XM_043249447.1
CTCATCTCACACCAACAGCTCCTGCGCCACGACTCCAGCCAGACAAGAAtgggaagaaaacaaacaTCCTGATTTTCGGTTGTGTGACATCAAGACACCAGCGACAAAATGCCAAGTGTCAAAcccaagaaaaagaaaatcaagaaGGACATCAATGAAGTTGAGGAACCACAAGCGGGGCCCGAGCCAGCTATAGAAATGGAGGATCTGGAGAGCCGGAGAGAGACCCTGACCCCTGAGCCTCAGGACAATCCaccacagaagaagaagaagaaaaagaaggcaCATACTTTTGatgAGAGTGAACAACAGGACCTTCCTAATGGAGATGTTCAAGATCCACATACAGATGATGAAGAAGTCACCAGAAAAAGCAAGAGAAAAAGGAAGGTTAAGATGATGGAAAACCAGTCTCATAATGAGCTCGGCGTGGAGGAGGACGACATAATCACCGATGTGCACGCACCCATATCTCAGCGCTCTCTATTCTCAGCCCCTCTGGGTCACAGTCATCCGATCGGAAAAGTGTTTGTGGAAAAGAACCGCCGCTTCCAGGCGACCGATCGTTTGAATTTATCCCGTGACCATATGGAGGAGTACATGGAAGTCAGGCCAATGTGGAATACACGAGATGTCGCCATGAGGGTCCACAGTGGCTTCAGGATCATTGGACTGTTCTCTCATGGGTTTCTGGCAGGATATGCGGTGTGGAATATCATTGTGGTGTATGTGTTAGCTGGAGAGCAGATGACCACTCTACATAACCTTCTCCAGCAGTACCACAGTCTGGCTTACCCCGCACAGTCTCTGCTTTACCTCCTGCTGGCCATCAGCACCGTGTCTGCCTTTGACAGGGTGAATCTGGCCAAAGCCTCCATGGCTCTTCGGGGTTTTCTCACTCTCGATCCAGCGGCTCTTGCTTCCTTCTTATACTTTGCCGCTCTCATCCTGTCTCTGAGCCAGCAGATGACCAGTGATCGAATACATCTCTACCCCACAGCCAATGAAACGCTTTGGCCCCCGGGTTCAGAACATCAGATTCTCCAGCCCTGGATCGTGGTAAACCTGGTCGTAGCTCTTCTGGTGGGTCTGGCCTGGGTGTTCGTTGCTACACGACCGGACATGGACTACACCGAGGAGTTTTTAATGGCGATGGAGGTGGAGGAGTATCCGCGTCACGATGAGAAAAATGAGCTGGCAGCCTGATACACCCATGCATGatttacatatattaacattgttttgtgttaaatgtcttgaagtaaacattttgtatgttacgttgttgttgttgagctTGTTACATACTGTAgataataaacttttttgttaagTTTCCTGTTTGCCTTTTTTGTTGATCTTCTAAGTGTGTATTTTAGAAGTAcgacttttttttgtctatggATCGACAAGAACTGAATTTACAGTATAGTCATTGAgcaattagaaatgttttgtttaaatgcttttaccAGAAGTATTGTATTGCATATTGCAGGTATTAATTGCAGTAAGTTGCTTTGCATAGAAGCTACTAAAATTGTGTGCTAAATTAATAAAGGCAAATAAATATAGCA

Function

symbol description
tmem237a Acts upstream of or within convergent extension involved in gastrulation. Predicted to be located in ciliary transition zone. Is expressed in nervous system; pectoral fin; pectoral fin bud; and pharyngeal arch 3-7. Human ortholog(s) of this gene implicated in Joubert syndrome and Joubert syndrome 14. Orthologous to human TMEM237 (transmembrane protein 237).

NR:

description
transmembrane protein 237A-like

GO:

id name namespace
GO:0060027 convergent extension involved in gastrulation biological_process

KEGG:

id description
K22765 TMEM237; transmembrane protein 237

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249446.1 True 1617 mRNA 0.46 11 8056543 8063095
XM_043249447.1 False 1577 mRNA 0.45 12 8056543 8063018

Neighbor

gene id symbol gene type direction distance location
abi2a abi2,abi2a,LOC107738105,LOC107752895,LOC107592995,LOC103029249,LOC108423993,LOC107688767 coding downstream 1375 8026229 ~ 8055168 (-)
LOC122352095 LOC107688783,LOC107738103,LOC107596557 coding downstream 99205 7955089 ~ 7957338 (-)
si:ch211-67e16.3 NA coding downstream 104261 7948380 ~ 7952282 (-)
si:ch211-67e16.4 LOC107596547,LOC107738112,LOC107668355,LOC107688758,LOC107752914,LOC107592999 coding downstream 108738 7938052 ~ 7947805 (-)
si:ch211-67e16.11 si:ch211-67e16.11,LOC107596562,LOC105899123 coding downstream 164135 7881178 ~ 7892408 (-)
mpp4a mpp4a,LOC107738104,LOC107688761,LOC107752892,LOC107592993,LOC107668389 coding upstream 1558 8064653 ~ 8074446 (-)
LOC122351474 LOC107600885,LOC107659206 coding upstream 141185 8204280 ~ 8209919 (-)
carf carf,LOC107751498 coding upstream 149693 8212788 ~ 8222003 (-)
fam117bb fam117bb,fam117b,LOC107751499,LOC107752888,LOC107596526,LOC107668400,LOC107677778 coding upstream 160606 8223701 ~ 8257719 (-)
bmpr2b bmpr2,bmpr2b,LOC107668372,LOC107593012 coding upstream 194848 8257943 ~ 8316394 (-)
G68554 nrp2b,LOC107596550,LOC107716756,LOC107688751,LOC107593002,LOC107752901 non-coding downstream 234654 7820008 ~ 7821889 (-)
G68555 nrp2b,LOC107688766,LOC107688751,LOC107752901 non-coding downstream 237711 7815249 ~ 7818832 (-)
G68489 NA non-coding downstream 675035 7381290 ~ 7381508 (-)
G68473 NA non-coding downstream 715049 7327829 ~ 7341494 (-)
LOC122352164 NA non-coding downstream 1021182 6982678 ~ 7035361 (-)
LOC122352023 NA non-coding upstream 407768 8470863 ~ 8474578 (-)
G68822 NA non-coding upstream 698676 8761771 ~ 8835225 (-)
G68826 NA non-coding upstream 730766 8793861 ~ 8801749 (-)
G68830 NA non-coding upstream 739290 8802385 ~ 8805405 (-)
G68839 NA non-coding upstream 753425 8816520 ~ 8817618 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other downstream 31871 8014449 ~ 8024672 (-)
LOC122351350 cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538 other downstream 902589 7070985 ~ 7153954 (-)
G68188 irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 other downstream 1795474 6246900 ~ 6261069 (-)
LOC122351979 NA other downstream 1956631 6099071 ~ 6099912 (-)
G68124 dip2a,LOC107549743,LOC107752588,LOC107720936 other downstream 2012618 6043275 ~ 6043925 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other upstream 13373 8076468 ~ 8094847 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other upstream 1845093 9908188 ~ 9910178 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other upstream 2370412 10433507 ~ 10443619 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other upstream 2452177 10515272 ~ 10519457 (-)
mrasa LOC107551943,LOC107663912,LOC107733654,LOC107600440,LOC107738526 other upstream 2617063 10680158 ~ 10686627 (-)

Expression


Co-expression Network