LOC122352002 (LOC107673670,LOC107748160,LOC107565946,LOC107756785,LOC107595835,LOC107695502)


Basic Information

Item Value
gene id LOC122352002
gene name LOC107673670,LOC107748160,LOC107565946,LOC107756785,LOC107595835,LOC107695502
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16237206 ~ 16239653 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249463.1
GACAGCCAGTCTAGGGAGGCGGTCCAAAGCAAAGCAATTTACAGATGGGTTTTTACATACATCAGTGACTGCATTTACAGAGCTAATGGGAATCTTTTTTTCCGAAAGCTAAATGGCAAACGATTCACATGCTGAATCTAACCTGTGCCAAACGTCCACTACAAATGTAGTTCTGCCCATTATCTACACCATTTTGTCTATCACCGGCCTGCCAGGGAATGCTATTTCTGTCTGGGTGTTCATACGTAAAATTGCCATCAAAACGTCCACTCACATCTACCTGATAAATCTAGGGATCTCAAACTTGTTGCTCTGCCTCACCATGCCATTCCAGGCGACATACTACTCACTTGGGACCAAATGGCACAAACACGACGCCATGTGCCAAACAGCAATAAATGGTCTAACTCCAGTGATCCACATCAACATCTGCATTGGGGTGATGATATTGAGCTGGGTGGCGCTCAGTCGCTTCGCCTCTCTGATTCAACACTCCCATGCTGATCGTCCAAGCCGGTGGCTTAAAGTTCTACCAGGTGCCTTCCTCTGTCGAAAAAAACATGCGAAACTGGCCTATGCGATGTGCACGGCCACTTGGGTCATCGTAGCCATATCGGTCACATCCTTTGTGGTGCTGTACTCAATCAGGGAGGCTAAGAACGTGGATGGCAGCAACAGGGATGAAGTGTGTTACAGCGTAGGAGTGGAGGTTGGCGGGGAAGGATCTCAAGTCTTTGCGTTAGTGGCAGTTTCacttttctttgtcttcttcCTGTTGGTCTTATGCGCTTACATGGCAGTGATCAGGCACATCTGGAGGTCAAGGAGAAGAGCGGTCATCTCAGACAGCCAGCGAGTCTACGCAAGAGTGTTTCGGAATATTGTTGTCATTATGGTGGTGCTGGTGGTCTGCCTCCTGCCGCACCACATCTACAAAGCCATCTTCGTTCATATCGTCAATGAACAGTCTTTGCCCGCATCACCTCCCAGAGACGCTTGCCATCCACTGTCCGTGTACGTGGAGGTGAAGAGCATCCTGCTCTGCTTAGCAACTCTGCGATGTAGCACAGACCCCATCATGTACTTCCTGCTGGACAAGACGTTCCGTAAGCATACTCTTAGCCTGTTGAGATTACGTGCTAGCAAAAATGACAGTCAATCATCAAAGTCTAACATGGGACAGATATCTCAGGCAAGTGCGTGTCTTTAAACATTGCTTGAGAGGAAACTGTACACGGAAACAAAAGGAGTCTCATTTTGAACGATGTTCCCTTACAGGAAAATGTTGTGTGGACGCACACAAGCATAGAAAAGTAAGAAACTTCCTGAACTAGATCTAAATAAAAGGGCATCTCTTTATATTGGATAACTTCCGCATGTCCATTGTTCTTTAGTATGGATGTTATGCTGTGAGAACTTTTGTGAAATGACAGCGCTAAGAAGTGCTTTATAAAAGAGGATATGAGGAGAGGCGCACAGTAGAACCCAATGCAAACAAGTATTTTGCAAGTTgcaatttcctttaaaataacaaagtgttttgaaaatctGCTACAAGTCAGACTGATGCTTCCATTCTCATGCCACATTAAATCGCAAAAGTACTTTGTGTAGCTTTAAA
>XM_043249464.1
acttttaattttaaatgactccTATGAACTGAATACAAATTTATAGCACAATTCGTAATGAAAAGTCCACATATCTTTAACTTTACAAATCATATATAAAGATAAAGGTAAGAAAAagactttaacattttttttgctgaaatgtcttttatgaaatgctgtaaaaacactTTACTGCTGAAAAGTATGTAATAACTACAGAATATCTGCTAACattatatatagctatatatatttactttttaaaacttaaagtCATGTTATATTTTCTCCAGAGAAATCAActatgttaacaaaaaaagaaaacatggttTATTGGGAAAGTGGTTTATGAGCTTCTCCAATTGAGGTAAACTATTTCCAGTAATCTAATGGGAATCTTTTTTTCCGAAAGCTAAATGGCAAACGATTCACATGCTGAATCTAACCTGTGCCAAACGTCCACTACAAATGTAGTTCTGCCCATTATCTACACCATTTTGTCTATCACCGGCCTGCCAGGGAATGCTATTTCTGTCTGGGTGTTCATACGTAAAATTGCCATCAAAACGTCCACTCACATCTACCTGATAAATCTAGGGATCTCAAACTTGTTGCTCTGCCTCACCATGCCATTCCAGGCGACATACTACTCACTTGGGACCAAATGGCACAAACACGACGCCATGTGCCAAACAGCAATAAATGGTCTAACTCCAGTGATCCACATCAACATCTGCATTGGGGTGATGATATTGAGCTGGGTGGCGCTCAGTCGCTTCGCCTCTCTGATTCAACACTCCCATGCTGATCGTCCAAGCCGGTGGCTTAAAGTTCTACCAGGTGCCTTCCTCTGTCGAAAAAAACATGCGAAACTGGCCTATGCGATGTGCACGGCCACTTGGGTCATCGTAGCCATATCGGTCACATCCTTTGTGGTGCTGTACTCAATCAGGGAGGCTAAGAACGTGGATGGCAGCAACAGGGATGAAGTGTGTTACAGCGTAGGAGTGGAGGTTGGCGGGGAAGGATCTCAAGTCTTTGCGTTAGTGGCAGTTTCacttttctttgtcttcttcCTGTTGGTCTTATGCGCTTACATGGCAGTGATCAGGCACATCTGGAGGTCAAGGAGAAGAGCGGTCATCTCAGACAGCCAGCGAGTCTACGCAAGAGTGTTTCGGAATATTGTTGTCATTATGGTGGTGCTGGTGGTCTGCCTCCTGCCGCACCACATCTACAAAGCCATCTTCGTTCATATCGTCAATGAACAGTCTTTGCCCGCATCACCTCCCAGAGACGCTTGCCATCCACTGTCCGTGTACGTGGAGGTGAAGAGCATCCTGCTCTGCTTAGCAACTCTGCGATGTAGCACAGACCCCATCATGTACTTCCTGCTGGACAAGACGTTCCGTAAGCATACTCTTAGCCTGTTGAGATTACGTGCTAGCAAAAATGACAGTCAATCATCAAAGTCTAACATGGGACAGATATCTCAGGCAAGTGCGTGTCTTTAAACATTGCTTGAGAGGAAACTGTACACGGAAACAAAAGGAGTCTCATTTTGAACGATGTTCCCTTACAGGAAAATGTTGTGTGGACGCACACAAGCATAGAAAAGTAAGAAACTTCCTGAACTAGATCTAAATAAAAGGGCATCTCTTTATATTGGATAACTTCCGCATGTCCATTGTTCTTTAGTATGGATGTTATGCTGTGAGAACTTTTGTGAAATGACAGCGCTAAGAAGTGCTTTATAAAAGAGGATATGAGGAGAGGCGCACAGTAGAACCCAATGCAAACAAGTATTTTGCAAGTTgcaatttcctttaaaataacaaagtgttttgaaaatctGCTACAAGTCAGACTGATGCTTCCATTCTCATGCCACATTAAATCGCAAAAGTACTTTGTGTAGCTTTAAA
>XM_043249465.1
acttttaattttaaatgactccTATGAACTGAATACAAATTTATAGCACAATTCGTAATGAAAAGTCCACATATCTTTAACTTTACAAATCATATATAAAGATAAAGGTAAGAAAAagactttaacattttttttgctgaaatgtcttttatgaaatgctgtaaaaacactTTACTGCTGAAAAGTATGTAATAACTACAGAATATCTGCTAACattatatatagctatatatatttactttttaaaacttaaagtCATGTTATATTTTCTCCAGAGAAATCAActatgttaacaaaaaaagaaaacatggttTATTGGGAAAGTGGTTTATGAGCTTCTCCAATTGAGCTAATGGGAATCTTTTTTTCCGAAAGCTAAATGGCAAACGATTCACATGCTGAATCTAACCTGTGCCAAACGTCCACTACAAATGTAGTTCTGCCCATTATCTACACCATTTTGTCTATCACCGGCCTGCCAGGGAATGCTATTTCTGTCTGGGTGTTCATACGTAAAATTGCCATCAAAACGTCCACTCACATCTACCTGATAAATCTAGGGATCTCAAACTTGTTGCTCTGCCTCACCATGCCATTCCAGGCGACATACTACTCACTTGGGACCAAATGGCACAAACACGACGCCATGTGCCAAACAGCAATAAATGGTCTAACTCCAGTGATCCACATCAACATCTGCATTGGGGTGATGATATTGAGCTGGGTGGCGCTCAGTCGCTTCGCCTCTCTGATTCAACACTCCCATGCTGATCGTCCAAGCCGGTGGCTTAAAGTTCTACCAGGTGCCTTCCTCTGTCGAAAAAAACATGCGAAACTGGCCTATGCGATGTGCACGGCCACTTGGGTCATCGTAGCCATATCGGTCACATCCTTTGTGGTGCTGTACTCAATCAGGGAGGCTAAGAACGTGGATGGCAGCAACAGGGATGAAGTGTGTTACAGCGTAGGAGTGGAGGTTGGCGGGGAAGGATCTCAAGTCTTTGCGTTAGTGGCAGTTTCacttttctttgtcttcttcCTGTTGGTCTTATGCGCTTACATGGCAGTGATCAGGCACATCTGGAGGTCAAGGAGAAGAGCGGTCATCTCAGACAGCCAGCGAGTCTACGCAAGAGTGTTTCGGAATATTGTTGTCATTATGGTGGTGCTGGTGGTCTGCCTCCTGCCGCACCACATCTACAAAGCCATCTTCGTTCATATCGTCAATGAACAGTCTTTGCCCGCATCACCTCCCAGAGACGCTTGCCATCCACTGTCCGTGTACGTGGAGGTGAAGAGCATCCTGCTCTGCTTAGCAACTCTGCGATGTAGCACAGACCCCATCATGTACTTCCTGCTGGACAAGACGTTCCGTAAGCATACTCTTAGCCTGTTGAGATTACGTGCTAGCAAAAATGACAGTCAATCATCAAAGTCTAACATGGGACAGATATCTCAGGCAAGTGCGTGTCTTTAAACATTGCTTGAGAGGAAACTGTACACGGAAACAAAAGGAGTCTCATTTTGAACGATGTTCCCTTACAGGAAAATGTTGTGTGGACGCACACAAGCATAGAAAAGTAAGAAACTTCCTGAACTAGATCTAAATAAAAGGGCATCTCTTTATATTGGATAACTTCCGCATGTCCATTGTTCTTTAGTATGGATGTTATGCTGTGAGAACTTTTGTGAAATGACAGCGCTAAGAAGTGCTTTATAAAAGAGGATATGAGGAGAGGCGCACAGTAGAACCCAATGCAAACAAGTATTTTGCAAGTTgcaatttcctttaaaataacaaagtgttttgaaaatctGCTACAAGTCAGACTGATGCTTCCATTCTCATGCCACATTAAATCGCAAAAGTACTTTGTGTAGCTTTAAA

Function

NR:

description
PREDICTED: probable G-protein coupled receptor 82

GO: NA

KEGG:

id description
K08420 GPR82; G protein-coupled receptor 82

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249463.1 False 1621 mRNA 0.45 2 16237206 16239653
XM_043249464.1 True 1907 mRNA 0.42 2 16237559 16239653
XM_043249465.1 False 1888 mRNA 0.42 2 16237559 16239653

Neighbor

gene id symbol gene type direction distance location
LOC122352001 LOC107565945,LOC107695503,LOC107756786 coding upstream 918 16233277 ~ 16236288 (+)
LOC122352000 LOC107673669,LOC107748159,LOC107565947 coding upstream 4150 16230538 ~ 16233056 (+)
nyx LOC107673668,LOC107748158,LOC107565934,LOC107595833,LOC107695501 coding upstream 34067 16197730 ~ 16203139 (+)
ddx3xa ddx3a,LOC107695499,LOC107673666,LOC107748156,LOC107565941 coding upstream 39717 16185527 ~ 16197489 (+)
usp9 usp9,LOC107748163 coding upstream 57043 16152577 ~ 16180163 (+)
kdm6a kdm6a,LOC107748151,LOC107695454 coding downstream 301579 16541232 ~ 16580313 (+)
ccdc80 ccdc80,LOC107748150,LOC107673676,LOC107695464,LOC107756780 coding downstream 445093 16684746 ~ 16694462 (+)
f5 f5,LOC107748149,LOC107673674,LOC107565953 coding downstream 460112 16699765 ~ 16713826 (+)
gpr161a gpr161,LOC107695469,LOC107595811,LOC107756778 coding downstream 474321 16713974 ~ 16720587 (+)
gpa33b LOC107673683,LOC107756739,LOC107595818 coding downstream 585181 16824834 ~ 16829252 (+)
G70757 NA non-coding upstream 13266 16222766 ~ 16223940 (+)
G70758 NA non-coding upstream 14623 16222211 ~ 16222583 (+)
G70755 NA non-coding upstream 16971 16219897 ~ 16220235 (+)
G70748 cask,LOC107565944,LOC107749409,LOC107556744 non-coding upstream 21979 16213172 ~ 16215227 (+)
G70747 NA non-coding upstream 26434 16208105 ~ 16210772 (+)
G70764 NA non-coding downstream 92991 16332644 ~ 16333049 (+)
G70766 NA non-coding downstream 149993 16389646 ~ 16389915 (+)
G70767 NA non-coding downstream 212653 16452306 ~ 16452818 (+)
LOC122351146 ndp,LOC107565935,LOC107695497,LOC107756747,LOC107748154 non-coding downstream 267067 16506720 ~ 16519350 (+)
G70791 LOC107756741,LOC107695496,LOC107595885 non-coding downstream 341539 16581192 ~ 16581462 (+)
rabl3 rabl3,LOC107569739,LOC107690631,LOC107659889,LOC107595844,LOC107736356 other upstream 335486 15899427 ~ 15901720 (+)
plcl1 LOC107569711,LOC107731752,LOC107690606,LOC107719808,LOC107659890,LOC107595846 other upstream 447504 15734570 ~ 15789702 (+)
LOC122351678 hspe1,mob4,LOC107690609,LOC107595852,LOC107569672,LOC107731766,LOC106586370,LOC105016277,LOC100701317,LOC103156730,LOC101472107,LOC102310674,LOC102783361,LOC108238849,LOC107690608,LOC106582314,LOC105899369 other upstream 521305 15708201 ~ 15715901 (+)
si:ch211-168k14.2 si:ch211-168k14.2,LOC107681321,LOC107748618,LOC108441415,LOC105905900,LOC108266656,LOC107600399 other upstream 811845 15401127 ~ 15425361 (+)
LOC122351767 NA other upstream 1647767 14587082 ~ 14589439 (+)
G70814 NA other downstream 488854 16728507 ~ 16731361 (+)
mpc2b mpc2,LOC107695492,LOC107673680 other downstream 506240 16745893 ~ 16749701 (+)
si:ch211-218d20.15 LOC107748193,LOC107695487,LOC107756736,LOC107673701,LOC107597587 other downstream 677108 16916761 ~ 16919290 (+)
jam2b LOC107748130,LOC107673722,LOC107695483,LOC107595821,LOC107597562 other downstream 964144 17203797 ~ 17208220 (+)
G71130 NA other downstream 1099474 17339127 ~ 17339622 (+)

Expression


Co-expression Network