vil1 (vil1,LOC107699006,LOC107676071,LOC107755365,LOC107601613,LOC107739444)


Basic Information

Item Value
gene id vil1
gene name vil1,LOC107699006,LOC107676071,LOC107755365,LOC107601613,LOC107739444
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 22622058 ~ 22635997 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249492.1
ATATATGGCCCTGAGTGAatgaacacagagagagataaaagtGCAAAGGTTGTAAAGTAGACAGAGCGAGAGCGTGTGGCACAGTCTCCACCACTGTCTGTGAACCAGCAGCACCTTTACCTGGCTGCTTCCTTCTCTATTCCTCCAGCGGCAGGTATTTCCTTGAGACTTAAGCTGGCACCATGCCACAGGATGTCAAGACCGATGTTCCCAAAGTCCTCAACAAAACCACACCAGGACTGCAGATATGGAGAGTGGAGAACATGGAGCTCGTGCCCTGTCCACCTAATTCATATGGGCAGTTTTTTGAGGGGGACAGCTACGTAACTCTCTACACTCACAAGACCAGCAACAACTATACCTACGACATCCATTACTGGCTGGGCAAGGAGACCTCTCAGGATGAGCAGGGAGCAGCAGCGATATACACCACGCAGATGGACGATCACCTAGGGGGCGCTGCTGTGCAGCACCGTGAGTGCCAGGGCCACGAGAGCGCCACCTTCCAAGGATACTTCAAACAGGGCATCATataCAAAAAAGGTGGAGTTGCATCTGGGATGAAACAAGTGGAGACGAACACATACAACATTCGCAGACTGCTGCATGTGAAGGGAAATAAGCATGTGGTTGCTGGAGAGGTGGAAATGAGATGGGACAGCTTTAATCAAGGTGACGTGTTCCTGCTGGACTTGGGGAGCCTGATCATTCAGTGGAATGGACCCAAGAGTAACCGAATGGAGAGGTTAAGGGGGATGAACCTAGCGAAGGACATTCGTGATCGAGAGAGGGGTGGACGAGCGCAAGTGACTGTAGTGGAAGGAGATAATGAGGACTCTTCAGAGGAAGCGATGAAACTGATGATTCAGGCAATGGgggagaaaaaacaaatcaaagaagCCATCCCAGATGAAATTGTGGATGAAAAACTCAAGACTGCCATTAAACTCTTTCATATTTCAGATGCTCAGGGGAACCTTGTAGTCCAGGAAGTGGCAGTGAAACCTCTCACACAAGACTTACTGAAAACCGAGGACTGCTATCTGCTGGATCAGGGCGGAATAAAGATTTTTATCTGGAAGGGCAAAAAGGCATCGAAAACTGAGAGAGCCGAATCTCTGAAGAAAGCAGAGGCCTACATAAAGGCAAAAGGATATCCTACGTCCACCTATGTAGAGACAGTAAGCGAAGGAGCAGAATCATCGGTGTTCAAACAGCTCTTCCAGAAGTGGACGGAAAAAGGACAGACAGTTGGATTGGGCACCACTCACAGTCCAGGGAAAATAGCCAAGGTTGAGCAAGTCAAGTTCGATGCCACCTCAATGCATGCTAGGCCTGACTTGGCTGCACAGCAGAAAATGGTGGATGATGGGTCAGGCGAAGCAGAGGTATGGAGGATAGAGGACAATGAGCCCGTACAAGTGGAGAGGAAGTGGCTTGGCCATTTCTATGGTGGGGACTGTTACCTCATTCTCTACAAATATCAAGTCAATAGCAAACTACACTACATTCTTTACATGTGGCAAGGCCGTCATGCAAGCACGGCGGAGCTGACAGCTTCTGCATATCAGGCTGTGATCCTAGACCAGAAGTACAACGGAGAACCAGTACAGGTCCGCGTTCCCATGGGAAAGGAGCCTATGCACCTAATGGCCATTTTTAAGGGTAAAATGGTTGTTTATGAGGAAGGAAGTTCCAGAGAAGGCTCCTCCCATTCTCAACCATCAGTAAGACTGTTTCACGTCCATGGAACAAATGAATTCAACACACGTGCTGTTGAGGTGCCTCCGCGCTCATCTTCTCTGAACTCCAACGATGTGTTTGTGCTCAGCACGGATAAATGCTGCTACCTGTGGTACGGCAAGGGCTGCAGtggagatgagagagagatggcCAAAACGTTGGCTGACATCATCTCCAAGAGGGAGAAGAATGTTATTGCAGAGGGTCAGGAACCGGCTGACTTCTGGGTAAACCTTGGTGGAAAGTCGCAGTATGCCAGCAGCAAAAGACTTCAGGAGGAAAACAGCAGTATCTCTCCTCGGCTGTTTGAGTGCTCCAACCAGACAGGACGCTTTATAGCAACAGAGATTACGAACTTTAACCAAGATGATCTGGATGAGGATGACGTGATGTTGCTGGACATCTGGGATCAGGTTTACCTGTGGATCGGCAAAGGTGCCAATGACAAGGAGAAGCATGACGCAGTGGTTACAGCGCAGGAATATCTGAAGTCTCATCCTGCAGGGCGTGACCTGGATACACCTATCCTGGTGGTGAAGCAAGGGTTTGAGCCACCTACTTTTACAGGCTGGTTTCACGCCTGGGACCCACAAAAGTGGAGTggTGGGAAATCTTACGACCAGCTTAAGGCAGAGCTTGGCACTGCAACCGATCTTATAGAAATTACTGTGGATCTGACCAAACCAACCTCAAACCAAACCAACTCAAATAATACAACTCAAGGGGGTAACTTACCCCGTCCCGTGACGCAAACCTTCCCTGCAGAGAATCTGGTGAACGTTCAGACAGAAGACCTGCCTAATGGAGTCGACCCGACAAGAAAAGAGGACTATCTCTCAAACGACGACTTTAACCTGATCATGGGGATTTCTCGGATTGATTTCTATGCCCTGCCATCCTGGAAACAGCTGaacatgaagaaagaaaagggCCTGTTTTAGGATGGGCACAAACACATTCCCGTTCTGCAAAACAGACTTCCTCTCATGCTAAACTTTATGAATGCTAGTAGTGGTGCGATGCAAATACACTACATTCAGGATCATTTCCTTCtagatttttttagatttattgtttacatgtttaattactttatttaaatgtgttgttttgcacatgcaaattgatttatttgaaattgccttatattataaaacagaatgaatTACTTTAAGAGTATgatttttaacagaaaatatgGATGATATGGGAAAATTAAGTTtgcaattctgtcttttttacaCAGGGATTTGTATTAAAGCGGCATGGTAAACTTTCAATGTAATCTTTCCTTAATGCATCTCGAGGGGAAACCTTCAAGCACTGACTAAAAGCTGCTTTATACTTAAGTGGCTTAAGCACTacaataaattttaatatatttcaagaaAGATAAAAGTTTTATGTGAGGTTAATCATGCATACTTGGTATTAATTCTAACAGACACTTGGAGACTTCTGTGTACTGCCTAATGTGTAATTTCCATTGGTATTAATCATTTACTGCATACAAGAGGCACACCACCTGTCTAATGGAAAAGTCAATAAACAGGAAAAGACTCACTGTAA
>XM_043249493.1
TCTGGTTAATGAGTTTGAGCAAGGAGAGGGGAGCGGCCACATTCTGGAGACTGAAGTTCACCTAGAGACAATCTGAAAGTGAACCAATCTGAAAGGACAGGAACCTTACACTCGGCTGCCAAGGACAGAAACACCCTGTCTAAAGAAGGTATTTCCTTGAGACTTAAGCTGGCACCATGCCACAGGATGTCAAGACCGATGTTCCCAAAGTCCTCAACAAAACCACACCAGGACTGCAGATATGGAGAGTGGAGAACATGGAGCTCGTGCCCTGTCCACCTAATTCATATGGGCAGTTTTTTGAGGGGGACAGCTACGTAACTCTCTACACTCACAAGACCAGCAACAACTATACCTACGACATCCATTACTGGCTGGGCAAGGAGACCTCTCAGGATGAGCAGGGAGCAGCAGCGATATACACCACGCAGATGGACGATCACCTAGGGGGCGCTGCTGTGCAGCACCGTGAGTGCCAGGGCCACGAGAGCGCCACCTTCCAAGGATACTTCAAACAGGGCATCATataCAAAAAAGGTGGAGTTGCATCTGGGATGAAACAAGTGGAGACGAACACATACAACATTCGCAGACTGCTGCATGTGAAGGGAAATAAGCATGTGGTTGCTGGAGAGGTGGAAATGAGATGGGACAGCTTTAATCAAGGTGACGTGTTCCTGCTGGACTTGGGGAGCCTGATCATTCAGTGGAATGGACCCAAGAGTAACCGAATGGAGAGGTTAAGGGGGATGAACCTAGCGAAGGACATTCGTGATCGAGAGAGGGGTGGACGAGCGCAAGTGACTGTAGTGGAAGGAGATAATGAGGACTCTTCAGAGGAAGCGATGAAACTGATGATTCAGGCAATGGgggagaaaaaacaaatcaaagaagCCATCCCAGATGAAATTGTGGATGAAAAACTCAAGACTGCCATTAAACTCTTTCATATTTCAGATGCTCAGGGGAACCTTGTAGTCCAGGAAGTGGCAGTGAAACCTCTCACACAAGACTTACTGAAAACCGAGGACTGCTATCTGCTGGATCAGGGCGGAATAAAGATTTTTATCTGGAAGGGCAAAAAGGCATCGAAAACTGAGAGAGCCGAATCTCTGAAGAAAGCAGAGGCCTACATAAAGGCAAAAGGATATCCTACGTCCACCTATGTAGAGACAGTAAGCGAAGGAGCAGAATCATCGGTGTTCAAACAGCTCTTCCAGAAGTGGACGGAAAAAGGACAGACAGTTGGATTGGGCACCACTCACAGTCCAGGGAAAATAGCCAAGGTTGAGCAAGTCAAGTTCGATGCCACCTCAATGCATGCTAGGCCTGACTTGGCTGCACAGCAGAAAATGGTGGATGATGGGTCAGGCGAAGCAGAGGTATGGAGGATAGAGGACAATGAGCCCGTACAAGTGGAGAGGAAGTGGCTTGGCCATTTCTATGGTGGGGACTGTTACCTCATTCTCTACAAATATCAAGTCAATAGCAAACTACACTACATTCTTTACATGTGGCAAGGCCGTCATGCAAGCACGGCGGAGCTGACAGCTTCTGCATATCAGGCTGTGATCCTAGACCAGAAGTACAACGGAGAACCAGTACAGGTCCGCGTTCCCATGGGAAAGGAGCCTATGCACCTAATGGCCATTTTTAAGGGTAAAATGGTTGTTTATGAGGAAGGAAGTTCCAGAGAAGGCTCCTCCCATTCTCAACCATCAGTAAGACTGTTTCACGTCCATGGAACAAATGAATTCAACACACGTGCTGTTGAGGTGCCTCCGCGCTCATCTTCTCTGAACTCCAACGATGTGTTTGTGCTCAGCACGGATAAATGCTGCTACCTGTGGTACGGCAAGGGCTGCAGtggagatgagagagagatggcCAAAACGTTGGCTGACATCATCTCCAAGAGGGAGAAGAATGTTATTGCAGAGGGTCAGGAACCGGCTGACTTCTGGGTAAACCTTGGTGGAAAGTCGCAGTATGCCAGCAGCAAAAGACTTCAGGAGGAAAACAGCAGTATCTCTCCTCGGCTGTTTGAGTGCTCCAACCAGACAGGACGCTTTATAGCAACAGAGATTACGAACTTTAACCAAGATGATCTGGATGAGGATGACGTGATGTTGCTGGACATCTGGGATCAGGTTTACCTGTGGATCGGCAAAGGTGCCAATGACAAGGAGAAGCATGACGCAGTGGTTACAGCGCAGGAATATCTGAAGTCTCATCCTGCAGGGCGTGACCTGGATACACCTATCCTGGTGGTGAAGCAAGGGTTTGAGCCACCTACTTTTACAGGCTGGTTTCACGCCTGGGACCCACAAAAGTGGAGTggTGGGAAATCTTACGACCAGCTTAAGGCAGAGCTTGGCACTGCAACCGATCTTATAGAAATTACTGTGGATCTGACCAAACCAACCTCAAACCAAACCAACTCAAATAATACAACTCAAGGGGGTAACTTACCCCGTCCCGTGACGCAAACCTTCCCTGCAGAGAATCTGGTGAACGTTCAGACAGAAGACCTGCCTAATGGAGTCGACCCGACAAGAAAAGAGGACTATCTCTCAAACGACGACTTTAACCTGATCATGGGGATTTCTCGGATTGATTTCTATGCCCTGCCATCCTGGAAACAGCTGaacatgaagaaagaaaagggCCTGTTTTAGGATGGGCACAAACACATTCCCGTTCTGCAAAACAGACTTCCTCTCATGCTAAACTTTATGAATGCTAGTAGTGGTGCGATGCAAATACACTACATTCAGGATCATTTCCTTCtagatttttttagatttattgtttacatgtttaattactttatttaaatgtgttgttttgcacatgcaaattgatttatttgaaattgccttatattataaaacagaatgaatTACTTTAAGAGTATgatttttaacagaaaatatgGATGATATGGGAAAATTAAGTTtgcaattctgtcttttttacaCAGGGATTTGTATTAAAGCGGCATGGTAAACTTTCAATGTAATCTTTCCTTAATGCATCTCGAGGGGAAACCTTCAAGCACTGACTAAAAGCTGCTTTATACTTAAGTGGCTTAAGCACTacaataaattttaatatatttcaagaaAGATAAAAGTTTTATGTGAGGTTAATCATGCATACTTGGTATTAATTCTAACAGACACTTGGAGACTTCTGTGTACTGCCTAATGTGTAATTTCCATTGGTATTAATCATTTACTGCATACAAGAGGCACACCACCTGTCTAATGGAAAAGTCAATAAACAGGAAAAGACTCACTGTAA

Function

symbol description
vil1 Predicted to enable actin filament binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in several processes, including actin polymerization or depolymerization; barbed-end actin filament capping; and regulation of lamellipodium morphogenesis. Predicted to act upstream of or within actin filament capping and actin nucleation. Predicted to be located in filopodium tip; microvillus; and ruffle. Predicted to be active in actin cytoskeleton; cytoplasm; and lamellipodium. Is expressed in gut epithelium; intestinal epithelium; and intestine. Orthologous to human VIL1 (villin 1).

NR:

description
villin-1

GO:

id name namespace
GO:0007010 cytoskeleton organization biological_process
GO:0003779 actin binding molecular_function

KEGG:

id description
K05761 VIL1; villin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249492.1 True 3312 mRNA 0.46 20 22622058 22633986
XM_043249493.1 False 3306 mRNA 0.46 20 22622058 22635997

Neighbor

gene id symbol gene type direction distance location
LOC122351761 LOC107601373,LOC107755372,LOC107739445,LOC107601614,LOC107601364,LOC107739440 coding downstream 1270 22616864 ~ 22620788 (-)
LOC122351760 LOC107755372 coding downstream 6277 22611358 ~ 22615781 (-)
dnajc10 dnajc10,LOC107755373,LOC107739439,LOC107699025,LOC107676092 coding downstream 11989 22597828 ~ 22610069 (-)
dusp19a dusp19a,dusp19,LOC107739447,LOC107699004,LOC107601374,LOC107601606,LOC107755360,LOC106586411 coding downstream 80348 22537975 ~ 22541710 (-)
LOC122351832 NA coding downstream 137349 22482226 ~ 22484709 (-)
itgb2 LOC107699026,LOC107739438,LOC107601382,LOC107676087,LOC107601617,LOC107755371 coding upstream 898 22636895 ~ 22645747 (-)
agr1 agr1,LOC107718316,LOC107692342,LOC107601372,LOC107754004,LOC107695966,LOC107560612 coding upstream 266451 22902448 ~ 22906312 (-)
hdac4 hdac4,LOC107560613,LOC107601379,LOC107741589 coding upstream 369841 23005838 ~ 23244247 (-)
LOC122352042 LOC107704822,LOC107739717,LOC107688954,LOC107601359,LOC107741586,LOC107601360 coding upstream 645517 23281514 ~ 23290139 (-)
LOC122351748 LOC107601359,LOC107704822,LOC107741586,LOC107739717,LOC107688954,LOC107601360 coding upstream 754695 23390692 ~ 23410990 (-)
LOC122352087 NA non-coding downstream 33807 22585744 ~ 22588251 (-)
G72583 NA non-coding downstream 41286 22579803 ~ 22580772 (-)
G72535 NA non-coding downstream 163300 22311078 ~ 22458758 (-)
G72537 pde1a,LOC108443795,LOC107716994,LOC107699023 non-coding downstream 311580 22307182 ~ 22310478 (-)
G72502 ppp1r1c,LOC107699022,LOC107601387,LOC107716995,LOC107755374,LOC107676093 non-coding downstream 326990 22286774 ~ 22295068 (-)
G72605 NA non-coding upstream 16505 22652502 ~ 22653575 (-)
G72603 LOC107739437,LOC107699030,LOC107601381,LOC107676090,LOC107755369,LOC107755357 non-coding upstream 22320 22658317 ~ 22658828 (-)
G72608 NA non-coding upstream 30900 22666897 ~ 22667111 (-)
G72615 NA non-coding upstream 64732 22700729 ~ 22701019 (-)
G72646 NA non-coding upstream 192101 22828098 ~ 22891619 (-)
LOC122351746 pde1a,LOC107716994,LOC107699023,LOC107676083,LOC107601607,LOC106582264,LOC107755361,LOC108443795 other downstream 110751 22297007 ~ 22511307 (-)
cerkl cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088 other downstream 398391 22171463 ~ 22223667 (-)
G72363 ttnb,LOC107716993,LOC107698997,LOC107657493,LOC107601612,LOC107714355,LOC108435066 other downstream 895238 21709288 ~ 21726820 (-)
G71938 nab1,LOC107565022 other downstream 2118168 20489164 ~ 20503890 (-)
mfsd6b mfsd6,mfsd6b,LOC107660588,LOC107657524,LOC107714386,LOC107728923 other downstream 2728743 19881550 ~ 19893315 (-)
G72930 LOC107656510,LOC107564128,LOC107744821,LOC107688951,LOC107596585 other upstream 1294210 23930207 ~ 23931329 (-)
grb14 grb14,LOC107722903,LOC107558602,LOC107677902 other upstream 1307988 23943985 ~ 23960325 (-)
G72978 LOC107722896,LOC107674757,LOC107558607,LOC107677899,LOC107755197,LOC107600691 other upstream 1584525 24220522 ~ 24280708 (-)
G73201 NA other upstream 2391588 25027585 ~ 25030965 (-)
G73301 NA other upstream 2712781 25348778 ~ 25349640 (-)

Expression


Co-expression Network