LOC122352021 (hs6st3b,LOC107555209,LOC107733651,LOC107663930,LOC107600438,LOC107720131,LOC107655503)


Basic Information

Item Value
gene id LOC122352021
gene name hs6st3b,LOC107555209,LOC107733651,LOC107663930,LOC107600438,LOC107720131,LOC107655503
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11454069 ~ 11464414 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249495.1
GATTGCCTCCAAATGACGTTAATATTCCCTTTACAGGATTTCCCACAAAGTGATATGGCACAAAGATTGCACAGAGCAAAGAACTGCGAAGAACATAATGGCATGCACACAGAGAATTCTCTCAGCAGTGGCGACACTTTATTGCTGAATATAGCGGAGCGCTGGACTGGGACCAGGTGCAGATGAAATTGTTTGCGTGCAACGAAAGAGCTCGCGCTATACCGTCTCATTGACATCATTCGCATCATCCCGCCGATGCGCGTCGCGAGATGGATGGAGAGCACGCTCTCATCGCGAGTGCGCGGAGATTCCGCAGACTAAAACAGAGCAACGAGGCAATTCAAAGCGTTTCATCTGAACGCGACGAGCAAACGTTGGCATTTTGAAGccttgcactttatttttaccACGATGTTCGGTTCTTAAACAGCCTTTGGTTACGCGTTTTGTTCGGTGACTTACACTTTGTTCGCAACTTTGCGAGAgagcaagttttttttcttatgtgatGTCTTGGATGTCACACTTCTGCGCATCTTTTTTACCATATCAACATGTGGCATGGGTTTTTTGGGCTGGATCCCACGCGGACGTCCTGGAGGAAGACCTGGAGAGGAGATCATGATTCACACTAACTGCATGAAGAATTTCCttgtgttaaaatgaatgagaaacCCAACAAATGGATTTTCATCCCAATTTTAGCCATTCTTTTTGTCATGATTGGGTACCAGTATATTTGTCCGGCGGGCGGCCAGGCTTGCCATTTCAGGACAGGAGACAAACTCGTTAGGATCGGTCCCCCGTCCACTCCAGACCCGACCACCGATGACCCGGAGGAAGACAGCCCAACTAAATGTGCGTCCAAATTCAACTTCACGGAGCGCGATCTGACACGCGACGTCGATTTCAACATCAAGGGAGACGATGTGATTGTGTTTCTGCACATTCAGAAGACAGGCGGGACCACCTTCGGCAGGCACCTGGTCAGGAATATCCGCTTGGAGCAGCCGTGCGACTGCAAAGCGGGACAAAAGAAATGCACGTGCCACCGGCCCGGCAAGCAGGAGTCATGGCTCTTCTCGAGGTTCTCCACGGGCTGGAGTTGCGGATTGCACGCGGACTGGACGGAACTGACCAACTGCGTGCCTGTGATAATGGACAAAAGGCAGCCTCCAAAGCGCAAGAGAAAGTTCTATTACATCACTCTGCTGAGGGACCCCGTTTCCCGCTACCTTAGCGAATGGAGGCACGTCCAACGAGGGGCGACGTGGAAGACGTCCCTCCATATGTGTGACGGACGGACACCAACGCCCGAAGAGTTGCCGTCCTGCTACGAGGGCTCAGACTGGTCGGGGTGCACATTGCAGCACTTCATGGACTGCCCCTACAACCTCGCCAATAACCGTCAAGTACGCATGCTGGCCGACCTCAGCCTGGTTGGATGCTACAACCTCTCCACTGTTCCCGAGAAGAGGCGCTCACAGCTGCTGCTGGAATCGGCCAAGAAAAACCTACGAGACATGGCTTTCTTCGGCCTGACGGAGTTCCAGCGGAAGACTCAGTACTTGTTCGAGCGCACCTTCCACCTCAAGTTCATTCGGCCTTTCATGCAGTACAACAGCACGCGGGCAGCCGGCGTGGATCTGGATAACGACACGATACAGCGCATCGAGGAGCTCAACGACCTGGATATGAAGCTGTACGACTACGCCAAAGACCTGTTTCAGCAGCGCTACCAGTACAAGCACATGCTGGACCGCCGGGAGCAGAGACTACTGAGAGGACAGGCGTCTTTCCACAGTCCGTTCCGAGAGGACGGAGCCGGAGGAGAGGGTACAGCACGCCTGCCAACCGAGGACTACATGAATCACATCGTCAACGGATGGTAACCGCCCACCCCTCTCCAGAGAGACCAAAAAAGTGACACAGTTACAAGGAGAGGGGGAATAAACAGACCCAAGTGGAATATCTATTCCCAGATGGGAGAGTTCAATGTCCCAATCTTTGGGTGGGAATATGGGACCAGGAACGTTCAAGAAATGCGTTTCGCTTAGTGCCGCATCTCataggcctttttttttaaacacataacattaatattaaattattatcttt

Function

symbol description
hs6st3b Enables 3'-phosphoadenosine 5'-phosphosulfate binding activity; oligosaccharide binding activity; and sulfotransferase activity. Predicted to be involved in heparan sulfate proteoglycan biosynthetic process, enzymatic modification. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including anterior neural keel; forerunner cell group; immature eye; nervous system; and tail bud. Orthologous to human HS6ST3 (heparan sulfate 6-O-sulfotransferase 3).

NR:

description
heparan-sulfate 6-O-sulfotransferase 3-B

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0017095 heparan sulfate 6-O-sulfotransferase activity molecular_function

KEGG:

id description
K02514 HS6ST1; heparan sulfate 6-O-sulfotransferase HS6ST1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249495.1 True 2118 mRNA 0.51 2 11454069 11464414

Neighbor

gene id symbol gene type direction distance location
gtpbp8 si:rp71-84d19.3,LOC107663822,LOC107567641,LOC107738531,LOC107733632,LOC107598183 coding downstream 49773 11400551 ~ 11404296 (-)
LOC122351856 tlr20f,tlr20.2,LOC107598181 coding downstream 57406 11392240 ~ 11396663 (-)
tlr20.4 tlr20.2,tlr20f,LOC107598181 coding downstream 64691 11386377 ~ 11389378 (-)
lcmt2 lcmt2,LOC107663870,LOC107698535 coding downstream 222381 11225956 ~ 11231688 (-)
rab5b rab5b,LOC107551955,LOC107738511,LOC107598172,LOC107698530,LOC108430508,LOC108266395 coding downstream 237415 11210200 ~ 11216654 (-)
efnb2a efnb2a,efnb2,LOC107555860,LOC107563180,LOC107675360,LOC105018709 coding upstream 518554 11982968 ~ 12000692 (-)
arglu1a arglu1a,LOC107555859,LOC107673121,LOC107711396,LOC107577473,LOC107675355,LOC106586866 coding upstream 539590 12004004 ~ 12009937 (-)
zeb2a zeb2a,LOC107711399,LOC107675348,LOC107563183 coding upstream 732340 12196754 ~ 12244788 (-)
itm2bb itm2bb,itm2b,LOC107673124,LOC107709423,LOC107601060 coding upstream 981138 12445552 ~ 12452338 (-)
slc39a10 slc39a10,LOC107673130,LOC107709428,LOC107724029,LOC107675357 coding upstream 1154862 12619276 ~ 12640868 (-)
G69467 NA non-coding downstream 88250 11358950 ~ 11365819 (-)
G69396 NA non-coding downstream 423576 11029377 ~ 11030493 (-)
G69362 NA non-coding downstream 500084 10947044 ~ 10953985 (-)
LOC122351427 NA non-coding downstream 507325 10930480 ~ 10946744 (-)
LOC122351998 NA non-coding upstream 326367 11790781 ~ 11954234 (-)
G69596 NA non-coding upstream 621300 12085714 ~ 12156439 (-)
LOC122351183 NA non-coding upstream 803698 12268112 ~ 12270147 (-)
G69607 NA non-coding upstream 815379 12279793 ~ 12280197 (-)
LOC122351337 NA non-coding upstream 839300 12303714 ~ 12321820 (-)
mrasa LOC107551943,LOC107663912,LOC107733654,LOC107600440,LOC107738526 other downstream 767442 10680158 ~ 10686627 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other downstream 934612 10515272 ~ 10519457 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other downstream 1010450 10433507 ~ 10443619 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other downstream 1543891 9908188 ~ 9910178 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other downstream 3359222 8076468 ~ 8094847 (-)
LOC122351308 si:rp71-84d19.3,gtpbp8,LOC107663822,LOC107567641,LOC107738531,LOC107733632,LOC107598183 other upstream 32533 11496947 ~ 11500495 (-)
gtdc1 gtdc1,LOC107709416,LOC107555857,LOC107563182,LOC107675364,LOC107673117 other upstream 626717 12091131 ~ 12194961 (-)
G69650 NA other upstream 958015 12422429 ~ 12423446 (-)
lrch1 lrch1,LOC107709425,LOC107601076,LOC107673127,LOC107724026 other upstream 1053870 12518284 ~ 12582425 (-)
LOC122351186 adcy5,LOC107555914,LOC107660638,LOC107596066,LOC107661140,LOC106586396,LOC107745452,LOC107668560,LOC107695824,LOC107716189,LOC107568450,LOC108433131 other upstream 1243562 12707976 ~ 12720690 (-)

Expression


Co-expression Network