vtcn1 (vtcn1,LOC107712252)


Basic Information

Item Value
gene id vtcn1
gene name vtcn1,LOC107712252
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14875492 ~ 14877656 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249517.1
AGATGCTGAGCAGAGAGGTGCATCGATTCATCACGGAAACTGCTTAAAAGTAGGAAGAGGTCACCAGAATGGCTTCAATAGGACAAATAATCTTtggaagTATGATTTTTCTCATCGTAGTCATTTCCGGACTAATCGTTTTCATTCTGGCTATTGCATTTTCAGTGTCCCAAGGTACCGTTGAAAGCAGAAGTCCCTCTGCCGTGGGCAACCTTGCTGATGATGTAGTCCTGGATTGCAGGTTCCTTAGCAACAGCGGCAATGAGCAGTTCAGCGATGTGTCGATTACTTGGCTGAAAGACTCTGTCAGTGGGGTGGTCtatgaatacaaaaacaaagCGGCCCAGCTTCAGGGGCAGAACACACAGTTCAAAAACAGGGTTCAATTGTTCTCAGACGCTATATCAATGGGCAACGCTTCCCTGCTGCTGAGAAATGTGAAGCTGGAGGACGAGGGTGTGTATCGCTGCTCTGTCAATGCACCAAAAGTCTCAGGGACTACCAGCGTTAACCTTAGAGTGGctgCATTCTCAGCTCCCACATTTACTCAACAGAATGGGTCTCTACTTGCTCAGGCTCTTAAATGGTTTCCCCAACCGGAGGTTAGCTGGTTGAGTCAGACTGGACAGCTTCTTAACAGCAGCAACCAGTTTATCAGCAGCACTGCAGGAACTGTGCAAGTTGTTAGTGTCCTCGAAGACCCAGTAAAAGATGAAACCTACACCTGTCTTATCCAGAACAGCCTTGTGAAAGCTATCTCAGAGGCCACTGTAACAGCAAACAGCGTGACAGAGAGGACATACTTCATATTCAGTGCTGCATCAACTGAAGTGCCATCATTACAAATTCTGCTCACAGTCATCCTTATTCTTTCTGCGAACCAGTATGTGCTGTCTCCAGTTTAAAAAACAGTTCTACTTCTGACCAGAAATTGttcaagcaaaaatattttttttaatcaaaaagagAATACAATGCTATTTGGTTATTCCAAATATAGGCTAATAGAATATAATTACCAACAGTTGATGGTCAAGCCGATCTTGTTTGACCatcttgttttatatatatatatatatatatatatatatatatatatatatatatat

Function

symbol description
vtcn1 Predicted to enable signaling receptor binding activity. Predicted to be involved in T cell receptor signaling pathway and regulation of cytokine production. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Orthologous to human VTCN1 (V-set domain containing T cell activation inhibitor 1).

NR:

description
V-set domain-containing T-cell activation inhibitor 1-like

GO: NA

KEGG:

id description
K06747 B7H4, VTCN1; immune costimulatory protein B7-H4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249517.1 True 1109 mRNA 0.42 5 14875492 14877656

Neighbor

gene id symbol gene type direction distance location
trim45 trim45,LOC107668847,LOC107569387,LOC107658235,LOC107597366 coding downstream 800 14868759 ~ 14874692 (-)
man1a2 man1a2,LOC107668846,LOC107724469,LOC107658234 coding downstream 13400 14795431 ~ 14862092 (-)
tent5c fam46c,LOC107724489,LOC107668849,LOC107658236,LOC107569365,LOC107597368 coding downstream 86202 14783457 ~ 14789290 (-)
wdr3 wdr3,LOC107569352,LOC107712260,LOC107724477,LOC107658238,LOC107668854 coding downstream 116906 14749258 ~ 14758586 (-)
hao2 hao2,LOC107724497,LOC107597376,LOC107658196,LOC107712250,LOC107569314,LOC107668850 coding downstream 254583 14614726 ~ 14620909 (-)
morc3a morc3a,LOC107569945,LOC107724492 coding upstream 6455 14884111 ~ 14898125 (-)
klf5b klf5,LOC107740910,LOC107668908,LOC107720143 coding upstream 123808 15001464 ~ 15006670 (-)
gpr18 LOC107740919,LOC107681324,LOC107668869,LOC107748622,LOC107600424,LOC107570094 coding upstream 279448 15157104 ~ 15161278 (-)
gpr183a gpr183a,LOC107569509,LOC107740920,LOC107668870,LOC107748620,LOC107681323,LOC107600423,LOC103047691 coding upstream 286643 15164299 ~ 15170670 (-)
si:ch211-184m13.4 LOC107668872,LOC107748619,LOC107569521,LOC107740921,LOC107600422,LOC107681312 coding upstream 301818 15179474 ~ 15181677 (-)
G70396 NA non-coding downstream 280150 14594263 ~ 14595342 (-)
G70393 NA non-coding downstream 285217 14589858 ~ 14590275 (-)
G70382 NA non-coding downstream 312500 14477332 ~ 14562992 (-)
G70332 LOC107724468 non-coding downstream 628164 14244287 ~ 14247328 (-)
LOC122352120 NA non-coding downstream 686491 14173817 ~ 14189001 (-)
G70438 LOC107600383,LOC107655530,LOC107720111 non-coding upstream 39144 14916800 ~ 14918840 (-)
LOC122352110 NA non-coding upstream 59468 14937124 ~ 14942863 (-)
G70494 LOC107740907,LOC107668887,LOC107600382,LOC107720110 non-coding upstream 97756 14975412 ~ 14981853 (-)
G70503 zic2a,LOC107600377,LOC107694587,LOC107569553,LOC107681317 non-coding upstream 135701 15013357 ~ 15275841 (-)
LOC122351681 dach1,LOC107668899 non-coding upstream 157163 15034819 ~ 15041730 (-)
LOC122351495 NA other downstream 502818 14359646 ~ 14372674 (-)
G70317 NA other downstream 621716 14196479 ~ 14253776 (-)
G70294 NA other downstream 935624 13938259 ~ 13939868 (-)
rif1 LOC107658288,LOC107555351,LOC107658286,LOC107725242,LOC107680950 other downstream 962549 13879570 ~ 13912943 (-)
G70261 LOC107682829,LOC107723691,LOC107555352,LOC107658202,LOC107555050 other downstream 1062165 13807822 ~ 13813327 (-)
G70549 NA other upstream 425447 15303103 ~ 15305975 (-)
tmtc4 tmtc4,LOC107748611,LOC107569561,LOC107681320,LOC107600375,LOC107694590 other upstream 511562 15389218 ~ 15399437 (-)
G70663 plcl1,LOC107731752,LOC107569711,LOC107690606,LOC107659890,LOC107595846,LOC107719808 other upstream 893765 15771421 ~ 15771864 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other upstream 1843148 16720804 ~ 16746222 (-)
G70986 pou2f1b,LOC107748141 other upstream 1939484 16817140 ~ 16823775 (-)

Expression


Co-expression Network