LOC122352034 (pde1a,LOC107716994,LOC107699023,LOC107676083,LOC106582264)


Basic Information

Item Value
gene id LOC122352034
gene name pde1a,LOC107716994,LOC107699023,LOC107676083,LOC106582264
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 22341408 ~ 22398653 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249520.1
gtgtgtgtgtgtgtgacagcgtTCCCTCAGTGCGTAGCGGAGAGACAGGTCTGCGCGCTGACACTCACTCCAGCGGGCTGATGCGCTCTGGAGCTGCGAGCAGGACCCTCTGGGAGACGTTTGTCGCTCAAACTGCCGGAGATGCTTTGAAGACCCGGATCTCTGTGCTACACGTGTTGAATCGCATACCTGCGTATCCCTCTGCATCTTAGATCACTCCAAACACTCGCGCGTTCGTGCACACCATGGATGCTCTGGCCAACGACACGGACGGGCTGGAGAACTCCTTGAAGTACTCCAAGTGCGACCAGACGGAGAAGATGTGGATTAGGCTGAAAGGAATGCAGAAGTACAAAAGCACATCTCAAAGATTGAGATGTCTGGTGAAGCAGCTGGATAAGGGGGAGGTGAACGTCGTAGATCTGAGGAAAAACATCGAATATGCCGCGTCGGTTCTGGAAGCAGTGTACATTGACGAAACTAGGCGGCTTCTGGACACAGAGGATGAGCTCAGTGATATCCAGGCAGACTCTGTGCCCATGGAGGTGCGAGATTGGCTGGCCTCCACCTTCACCAGGAAGATGGGAGTGGTGCGCAGACGGCCGGAAGAAAAGCCCCGGTTCCGCAGCATCGTTCACGCCGTTCAGGCTGGGATCTTTGTTGAACGaatGTACAGAAGAACATCCAACATGGCAGGGTTGACCTATCCACCATCTGTGATTACTGCTCTAAAGGATGTTGATAAATGGTCATTTGACGTCTTCACGCTTCAAGAGGCGAGTAGTGAACACGCTCTGAAGTTCCTGGTGTATGAACTTCTCACCAGATATGACCTGATCAGCCGCTTCAGAATACCAGTGTCCTCCTTGGTGTCATTTGTGGAAGCTCTGGAAATCGGCTACAGCAAGCACAGAAACCCTTATCACAATCTGATCCACGCTGCCGATGTCACGCAGACAGCACACTATCTGATGCTACACACTGGCATTATGCACTGGCTCACTGAACTGGAAATATTGGCCATGGTGTTTGCCGCTGCTATCCACGACTTTGAACACACTGGAACCACCAATAACTTCCACATCCAGACCAGATCGGAAGTAGCCATCCTCTACAACGATCGCTCGGTTCTGGAAAACCACCACGTGAGCGCAGCCTACAGACTCATGCAGGAAGATGAGATGAACATCCTGGTCAACCTCTCCAAGGATGACTGGAGAGAGCTGCGTACGCTGGTGATCGAGATGGTCATGAGCACAGATATGTCCTGCCATTTCCAGCAGATCAAGACGATGAGGAACACTCTGCAGCAGCCCGAGGGAATAGACAAGGCTAAAGCGCTGTCCCTGATGCCTGCGGCTGATATCAGCCATCCCGCTAAGGGCTGGAAACTGCACTACCGCTGGACACAAGCGCTCATGGAGGAGTTCTTCAGACAGGGTGACAAGGAGGCAGAACTAGGGCTGCCATTCTCTCCACTGTGTGACCGGAAAGCTACCATGATTGCCCAGTCTCAGATAGGGTTCATCGATTTCATCGTGGAGCCTACGTTCTCTGTTCTGGTCGACACGACAGAGAAGATCATTAGTCCTCTCATAGAGGAAGCTGTCAAATCTGGGGGTGTGCGCAGGTCAAGTTTGACAGGTCGGGGCTCGGCTGCGGTGGTGGAGTCAGTGCAGAGACACAGCGGTCGGGGTTCGAATGACGAGCAGGGGGGCACTACAGATTACTCACTGTGCGGCATCGACCTAAAACGAGTCCGACACCTGCTCTCTGAGATCATCCAGAACAACAAGGAGCGCTGGAAAGAGCTGTCTGTGCAAGAGTTGGCCAACAAACAACACGAGAGAATGTCAGACCTGGAAGAGGAGCCCATGAGGAACACACAAGTCACACTGTCCCGCAGCAGTCCAGCCAGAGGGAGTCACGACTCAGAGTCCAAGTCCCTGAACGAACTCAACAATACGGACTCCACTCACTCTTCCCAGGACTCTCTGGACCAGAGCTCCCAGTCCCCGACGGAGGGGCCCGGCGAAGGCTCCCCAGAGGAGCACAGCTCAGAAACTCTGCCTTGGAATGGCAAAAGCGCCTAACGTCACACAGACGCAGCCAAGcctgaatgtttttaatcacaaaCAGGACGATGTACATAGCATTGTCCTCATTGTATTGTAATGCTATTATACTCTCGGGCTCGGAGGGCTAATTGTGCGGACGGATGCGCCGAACGTCCACGCAGCGCGTCGTAGAGACGGTAGTGTGCGGTGTTGTCATTGCGACTGTGTTATTGCCGGAGATAGACCTCTATCGTCCCCTTGAGGAGGATTTAGCGAGCCCCTGAAACGCAACGCTACCTATTCGCTTCCCGGGCTTTATTCATGTTGGTTCTATTACGATTtacgtttttcttttctctctcttttttggttttgtttgtagactgtcattatttattaaagattaaagaaacgtgacacttttttaaaaaaaataggctcatttt

Function

symbol description
pde1a Predicted to enable calcium- and calmodulin-regulated 3',5'-cyclic-GMP phosphodiesterase activity. Acts upstream of or within pronephros development. Predicted to be active in neuronal cell body. Is expressed in brain; head; liver; pleuroperitoneal region; and trunk. Orthologous to human PDE1A (phosphodiesterase 1A).

NR:

description
PREDICTED: calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A-like

GO: NA

KEGG:

id description
K13755 PDE1; calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249520.1 True 2503 mRNA 0.52 17 22341408 22398653

Neighbor

gene id symbol gene type direction distance location
neurod1 neurod1,LOC107601389,LOC107755376,LOC107676085,LOC107716998,LOC107601620 coding downstream 112909 22225558 ~ 22228499 (-)
LOC122351744 ube2e3,LOC107601610 coding downstream 433695 21897185 ~ 21907713 (-)
LOC122351560 ttn,LOC107657509,LOC107714399,LOC108435065 coding downstream 445361 21744043 ~ 21896047 (-)
LOC122351741 LOC107704498,LOC107549376 coding downstream 1170633 21168939 ~ 21170775 (-)
LOC122351738 ttnb,LOC107698997,LOC107714355,LOC107657493,LOC107601612,LOC107716993,LOC107562704 coding downstream 1570255 20769745 ~ 20771153 (-)
LOC122351832 NA coding upstream 83573 22482226 ~ 22484709 (-)
dusp19a dusp19a,dusp19,LOC107739447,LOC107699004,LOC107601374,LOC107601606,LOC107755360,LOC106586411 coding upstream 139322 22537975 ~ 22541710 (-)
dnajc10 dnajc10,LOC107755373,LOC107739439,LOC107699025,LOC107676092 coding upstream 199175 22597828 ~ 22610069 (-)
LOC122351760 LOC107755372 coding upstream 212705 22611358 ~ 22615781 (-)
LOC122351761 LOC107601373,LOC107755372,LOC107739445,LOC107601614,LOC107601364,LOC107739440 coding upstream 218211 22616864 ~ 22620788 (-)
G72537 pde1a,LOC108443795,LOC107716994,LOC107699023 non-coding downstream 30930 22307182 ~ 22310478 (-)
G72502 ppp1r1c,LOC107699022,LOC107601387,LOC107716995,LOC107755374,LOC107676093 non-coding downstream 46340 22286774 ~ 22295068 (-)
G72500 NA non-coding downstream 218000 22123190 ~ 22123408 (-)
G72493 NA non-coding downstream 241170 22100026 ~ 22100238 (-)
G72472 NA non-coding downstream 284573 21995935 ~ 22056835 (-)
G72583 NA non-coding upstream 181150 22579803 ~ 22580772 (-)
LOC122352087 NA non-coding upstream 187091 22585744 ~ 22588251 (-)
G72605 NA non-coding upstream 253849 22652502 ~ 22653575 (-)
G72603 LOC107739437,LOC107699030,LOC107601381,LOC107676090,LOC107755369,LOC107755357 non-coding upstream 259664 22658317 ~ 22658828 (-)
G72608 NA non-coding upstream 268244 22666897 ~ 22667111 (-)
cerkl cerkl,LOC107699018,LOC107716999,LOC107755377,LOC107601393,LOC107676088 other downstream 117741 22171463 ~ 22223667 (-)
G72363 ttnb,LOC107716993,LOC107698997,LOC107657493,LOC107601612,LOC107714355,LOC108435066 other downstream 614588 21709288 ~ 21726820 (-)
G71938 nab1,LOC107565022 other downstream 1837518 20489164 ~ 20503890 (-)
mfsd6b mfsd6,mfsd6b,LOC107660588,LOC107657524,LOC107714386,LOC107728923 other downstream 2448093 19881550 ~ 19893315 (-)
nab1b nab1b,LOC107602153,LOC107660590,LOC107565022,LOC107714351,LOC107657527,LOC107728906 other downstream 2488783 19833920 ~ 19852625 (-)
G72930 LOC107656510,LOC107564128,LOC107744821,LOC107688951,LOC107596585 other upstream 1531554 23930207 ~ 23931329 (-)
grb14 grb14,LOC107722903,LOC107558602,LOC107677902 other upstream 1545332 23943985 ~ 23960325 (-)
G72978 LOC107722896,LOC107674757,LOC107558607,LOC107677899,LOC107755197,LOC107600691 other upstream 1821869 24220522 ~ 24280708 (-)
G73201 NA other upstream 2628932 25027585 ~ 25030965 (-)
G73301 NA other upstream 2950125 25348778 ~ 25349640 (-)

Expression


Co-expression Network