LOC122352035 (rbms1,LOC107675130,LOC107730583,LOC107663836,LOC107722911)


Basic Information

Item Value
gene id LOC122352035
gene name rbms1,LOC107675130,LOC107730583,LOC107663836,LOC107722911
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 25862753 ~ 25919696 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249521.1
GCACAACCGCAAACAGCCTCCTGTTGGCCCCGCCTCCCACCCAATGGCTCCGCCCAGTCCCGGAACCAACAGCAGCACCAatcacagcagcagcagcagcagcacggCCGGCTGGGAGCAGCTCAGCAAAACAAACCTCTACATCCGTGGTTTACCACCAACCACCACCGACCATGACTTGGTCAAGCTCTGCCAGCCATATGGAAAAATCGTATCAACCAAGGCCATCTTAgacaaaaccacaaacaaatgcaaagGCTATGGCTTCGTGGACTTTGACAGCCCCGCTGCTGCTCAGAAAGCCGTCAGCGCTCTGAAGACCAGCGGAGTTCAGGCTCAGATGGCAAAGCAACAAGAGCAGGACCCCACCAACCTGTACATATCTAACCTGCCGCTGAGCATGGATGAGCAGGAGTTAGAGGCCATGCTGAAGTCCTTCGGACAGGTCGTCTCCACACGTATCCTGCGGGACACCAACGGGGCCAGCCGAGGGGTCGGATTCGCCAGGATGGAGTCGACAGAGAAATGCGAAGCCGTCATCTCTCACTTCAACGGGAAATTTCTCAAAACACCAGCTGGAGTTATGGccCCGTCAGAACCCTTGCTGTGCAAGTTTGCGGACGGAGGCCAGAAGAAGCGTCAgagtcaaaataaatatgtgcagAACGGACGAGCCTGGGCCAGAGACGGAGAGACCAGACTTGCTGGCATGACACTCACGTACGACCCCACCACAGCTGCTATGCAAAATGGATTCTATCCGACCGCCTACAGTATTACAAACCGAATGATCACACAGACCCCTATGTCTCCATACATCTCCCCCGTCTCCACGTACCAGGTACAGAATCCATCCTGGGTCGCCCATCAGCCCTACATCTTGCAGCATCCGGGAGCAGTGATATCGCCCTCTATAGATCACTCCATGTCTCTGCAGCCGGCGTCCATGATGGGTCCCCTCACTCAGCAGATGAGTCACCTCTCTCTGGGCAGCGCAGGAACGTTTATGCCGGCCAGTCCAGCTCTCCAGGGGCCGTATATCCCTCCATACACTCACATGCAGACCACCGCCGTCTCGGTTGAGgagaACAGTCCACAGCCTCAGGTGGAATCGTCCAATGATCATTCACCTTACACCTATCAGCAGGCCAAGTGATGAAGAGGGCCCGTTCGAGAGAGGAGGAGACGACTGCTAAATCAATAACAGCTTCCTTCCAAGGACCGGCTCTACCGATGAATCGACTTTTTTTGCACAGGTTCTACGACGAGTTCCTCGGTTTTATAATAAAACGACTTCGACTATTTTGGTATAAGTTCCATTAGGTGCAAATCAAGGATTCATTTCATCAGAGGACGCCAACGAAAGAAAACGGGAaggaaaaagttttattttactaaGGAAACGACGCTTATTTTTTACCAAGGATCGTCGCGTAGATGCGGGGACTTCATGGCGCCGCTCGACGTGCGCGGAGattcttcttatttttatgatttcggattcgttctctctctctctctatttctctttttttcttttgtactgAAACAGACGCTCGTTTTTAGAGATTTATCAGCCGGACATCCCGAGAAAGACTGCGTTTTTGTGCTTGCGGTGTGAGTGTCATTgacgtgtttttgtttgtgtgcttcATCTTCGGCGCGACCGATCTGTTCGTCTTATACGATTTGCCTTAAACTCTTTCCCGTACGGTAGCCGAAAGAAAAGTCGTCCGGCCGCTGCCTTGTAAAAAATCAGCTGAATAGGGCTTTTTTTCAGCAACATTTCCGCCGCGCTTGGATTCCGGTGTTTtgcttctttattttattttttctttctctctctctctctctctctccgatCTTTTAGAGTGATGATAACGCTGATGGAGTTTTAATAGGATTTAACGTTTTTATAATCGGAGGCGACGACTAGCCTTCGGTTGTTTGAATGTGGTAGAAATTCTGCTGAACGATCACATTTTTGATAATTGCCTTTTCGTTTATAAATCTCGGTGTTGTAGTGTAGCTTTAGGTGAAGGAGGGGGAGGAGTTTTACCTCGAGGGGAGGAGCTTCGGCTCGCATTCTAATGAGGGGGCGTGGTCTGTCAGTCCGATCGAATATCGCAACTTTCAGCAGCGGGCTTCTTCGGGAGAGAGGTGAGCGTTTAGCGTTTAGTGCTCGTTTTACTATATAGCAGGCAAACAAATCTCGGCACTTTCGAGTTTACTTCACCAAAGACAGTCGGCGAGCGGAGTTTCTCTCGAGGCGGGCCACGCTGAGACTTTATAACAGACCGGGTCACAGTTGTGGAGAATGTGCCTTCTTTGTACATATGCATTCAGCTGTCTTTTAGTTGGCGAGGCGCGGACACCGATTTGAAGGACGATTTGGATCCAGCAAGTGCCACGAACTGAACCAAGACATCACTACAGAGCGGAGACGACCGAAACTGAAACGCGGGAACGAGGACAGGTTGAAACGACGGCTCCGTTCCCAAACCCTAGTGAGCTGCGCAGCGCCGTACGAATAGGCCCTTGCCTTGGCTCCTTTGCGGTAAAATTACGGTAAATTACAATGATCTATTGGGATTCGGCGGAAGCGGTGCACTTAAATCGCGCTGCCTTAAaattgagggaaaaaaacaacgcatttgcaattttatttccTGGGTTCtggaatgatttaaaataatgatttgtgtAATAATGCCAAACGCATTTAAAACCCAACGCTTGCAGGCATTTCTGAACTAGCGCTGTCGGTTAAGTGCGTCCAAAATAGGTGGTCGTTTACGTGACGAATATACACAGCGCGCGCACGTATATCGTGTGTATGTGAACGCACTgggaaaatgtttacatgtatgtatttacattcaGATCATTTATATCGTATATACATGTAAGAGTTTTCTCAAATATGTActtactgtatgtatgtatttatatatacataatgtatgtttgtgcactgtgtacatttgttatgaaaacaaaatctcaaacaaaaattaatcgtcgcttgacagcactattac

Function

symbol description
rbms1 Enables RNA binding activity. Predicted to be involved in RNA processing. Located in cytosol.

NR:

description
PREDICTED: RNA-binding motif, single-stranded-interacting protein 1-like isoform X3

GO: NA

KEGG:

id description
K24990 RBMS; RNA-binding motif, single-stranded-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249521.1 True 3041 mRNA 0.48 14 25862753 25919696

Neighbor

gene id symbol gene type direction distance location
LOC122351834 LOC107572957,LOC107663596,LOC107573769,LOC107728255,LOC107661170,LOC108265697 coding downstream 399904 25459895 ~ 25462849 (-)
gpbar1 LOC107656509,LOC107564146,LOC107688960,LOC107739693,LOC107596586 coding downstream 1054972 24803623 ~ 24807781 (-)
zgc:92380 zgc:92380,LOC107656510,LOC107564128,LOC107688951,LOC107739632 coding downstream 1065699 24789506 ~ 24797054 (-)
LOC122351587 NA coding downstream 1076516 24784903 ~ 24786237 (-)
LOC122351585 LOC107656512,LOC107744835,LOC107596607,LOC107739743,LOC107688961,LOC107564147 coding downstream 1090494 24768285 ~ 24772259 (-)
gcgb gcgb,gcg,LOC107730589,LOC107677918,LOC107722905,LOC107674768,LOC105907977 coding upstream 145516 26065212 ~ 26067013 (-)
LOC122351282 fap,LOC107563829,LOC107722901,LOC107677917,LOC107561562 coding upstream 148542 26068238 ~ 26080787 (-)
ifih1 ifih1,LOC107722900,LOC107563828,LOC107730588,LOC107561563 coding upstream 162452 26082148 ~ 26104816 (-)
G73351 NA non-coding downstream 341 25860328 ~ 25862412 (-)
G73350 NA non-coding downstream 15957 25834317 ~ 25846796 (-)
LOC122351247 NA non-coding downstream 112364 25744021 ~ 25750389 (-)
G73305 cdo1,LOC102791980 non-coding downstream 385815 25472266 ~ 25476938 (-)
G73302 NA non-coding downstream 472938 25351063 ~ 25389815 (-)
G73308 NA non-coding upstream 25705 25945401 ~ 25965894 (-)
G73379 slc4a10,LOC107722898,LOC107674766,LOC107730592 non-coding upstream 124468 26044164 ~ 26045413 (-)
G73385 NA non-coding upstream 135171 26054867 ~ 26062832 (-)
LOC122351758 LOC107663860,LOC107722919,LOC107561565,LOC107585695,LOC107675138 other downstream 9450 25794083 ~ 25853303 (-)
G73347 NA other downstream 69697 25790517 ~ 25793056 (-)
G73300 LOC107577510,LOC107663597,LOC107729051,LOC107728259,LOC107661178 other downstream 404011 25456414 ~ 25458742 (-)
G73301 NA other downstream 513113 25348778 ~ 25349640 (-)
G73201 NA other downstream 831788 25027585 ~ 25030965 (-)
LOC122351579 LOC107563831,LOC107730593,LOC107677922,LOC107674758,LOC107722906 other upstream 186961 26106657 ~ 26187631 (-)
fign fign,LOC107730568,LOC107722902,LOC107677893,LOC107674765,LOC107600675 other upstream 352680 26272376 ~ 26331126 (-)

Expression


Co-expression Network