XLOC_006566 (si:ch1073-126c3.2)


Basic Information

Item Value
gene id XLOC_006566
gene name si:ch1073-126c3.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 20535159 ~ 20540790 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012700
GTGTTGTAATTTGGTCAACAAATGGAGGGTACATTAACCTCTGATGCAATAAATGTTCacaaaaaaagaagattaaaGGTAAAAATTGCATAGAGCTTTTAGCAGCAACACTAACAACATGGAATCTGCAACAATAGGCAGAAAATGGAAGCAGCTTTTGCTCTTTGCATTTCTCTCAACTTTAACTCATGGACAATCTCATTCTTCATGCCTTCCCGCTGACTTTTCTTTTGATCAGCTTGACAAACAGCTTCAGAACATAAAAAACTGTTTGGAAACTGTATCTGACAACTGGACGTCATACCAACACGGAAACATTCTTAATCAACTACAAGCATTAACTGATATCATTCAGAGGCAAGACAACAAAGCGTTTCAGAAGTTACTTCCAGAAAACTGTCCAGCTCCAGCAGTGCCTGAGAATGGAGGACTGCTGTGTTTATCTGTGAAGGATAAGATCTACTGTAAACCTATGTGCAATGCGGGCTATGATTTCAATTTTCTTAGAAGATCAAGGCTGTTTGAGGAATGCAGTACTGCCACAAAACACACATGGACAACTCAGTACATTGGTGGCAACAGGCTGGCTATATGCAACAAGTCCCACATTGCGGTGTCAGGAGCCCCCTCTGCCTACTTTCCTCAAGGCGAGGACTGTCACATAACAAAGAGCAACGAACAACTAACGCAGAACATCACAAACATCTTTAAATCTGAGCTGGCTAAAGTGGAGACCACAGAATCAGAGTCTACCAAACTTCTCtgtggcaacatcaacaactaAATCTAAAATGTAGATCAAAAATGGTTTGGAAGATGTTTAGTGCTTGatgtaaaaatacaaatgaaccatgatgatttctcttttttcagatttatcaTGATTAAGCAAAAATGTTACCTTGAGGAAATTAGCGTGCAGCTGTAATgatgaaaaaaatcttattgatcataataattgaataataactAAAGTATCTTAGTTTAGGGCTAGTATTGACATAtagtacatgaaaaaaaaaaaaaaaaacttaaggggCAAACTGGCAATACACTTTTTCTAGCTCTTATTGTTGGCAAGTAAAGTCTTACAAAATCTTTATACATTATTCATGCTTCTCTAAACAATTTCACAGTATACAATTAATCACTCTCAGACAATGAGAAGTAAAGCAGCCAACATTACTGAGGAGGTTTCAgactatttaatttatatttctgGAATAATCAGCCCATCGGGGTCTAAGGAGCATTTGAGAATTAGACAGGTCAGCTTAATGGCAGATGGATTTATATGACCCATTTATATCATAAACACACTGGATGaccatgttgaaaattatttgaGACTTTGCATATTTTACATTAGTCTAACATGTGCATATAAGCATTTAATTACAAACAAGaagtatatttttttaacttatgtGAATACAATTCAGTCTGTatgtaacttttttaaaatagaaaacaacatggataataaaagcaaatttaaatgTT
>TCONS_00012701
ATAGAGCTTTTAGCAGCAACACTAACAACATGGAATCTGCAACAATAGGCAGAAAATGGAAGCAGCTTTTGCTCTTTGCATTTCTCTCAACTTTAACTCATGGACAATCTCATTCTTCATGCCTTCCCGCTGACTTTTCTTTTGATCAGCTTGACAAACAGCTTCAGAACATAAAAAACTGTTTGGAAACTGTATCTGACAACTGGACGTCATACCAACACGGAAACATTCTTAATCAACTACAAGCATTAACTGATATCATTCAGAGGCAAGACAACAAAGCGTTTCAGAAGTTACTTCCAGAAAACTGTCCAGCTCCAGCAGTGCCTGAGAATGGAGGACTGCTGTGTTTATCTGTGAAGGATAAGATCTACTGGCTATGATTTCAATTTTCTTAGAAGATCAAGGCTGTTTGAGGAATGCAGTACTGCCACAAAACACACATGGACAACTCAGTACATTGGTGGCAACAGGCTGGCTATATGCAACAAGTCCCACATTGCGGTGTCAGGAGCCCCCTCTGCCTACTTTCCTCAAGGCGAGGACTGTCACATAACAAAGAGCAACGAACAACTAACGCAGAACATCACAAACATCTTTAAATCTGAGCTGGCTAAAGTGGAGACCACAGAATCAGAGTCTACCAAACTTCTCtgtggcaacatcaacaactaAATCTAAAATGTAGATCAAAAATGGTTTGGAAGATGTTTAGTGCTTGatgtaaaaatacaaatgaaccatgatgatttctcttttttcagatttatcaTGATTAAGCAAAAATGTTACCTTGAGGAAATTAGCGTGCAGCTGTAATgatgaaaaaaatcttattgatcataataattgaataataactAAAGTATCTTAGTTTAGGGCTAGTATTGACATAtagtacat
>TCONS_00012702
GAATCTGCAACAATAGGCAGAAAATGGAAGCAGCTTTTGCTCTTTGCATTTCTCTCAACTTTAACTCATGGACAATCTCATTCTTCATGCCTTCCCGCTGACTTTTCTTTTGATCAGCTTGACAAACAGCTTCAGAACATAAAAAACTGTTTGGAAACTGTATCTGACAACTGGACGTCATACCAACACGGAAACATTCTTAATCAACTACAAGCATTAACTGATATCATTCAGAGGCAAGACAACAAAGCGTTTCAGAAGTTACTTCCAGAAAACTGTCCAGCTCCAGCAGTGCCTGAGAATGGAGGACTGCTGTGTTTATCTGTGAAGGATAAGATCTACTGTAAACCTATGTGCAATGCGGTATACTATACACCAGTCTCACTGCTATTGagccatatttattttttaattgttgttgttttttataacaaaaaatctagccaggctcattggaaataagtGCCTCACCCTAGATTTTTGCAAAAATATGTTGCTCCAGGTACAGCATTTcactgcatgtttcagatgacaaattcactTGAGGGAATTGTCTACATTTGTCTACAAGATGTCTTTATAGTACATGTCCACGAGATGGTGTGGCTTGTCAGATCATCTAGACCACAGGACCCCATAGGGACATGAACCTATAGCCTACATGTCTGTGCGGGACTTTTTTTCAGTCCCACCAAGGCTAGGTTTATTCGGCAGGGGTTCGCTATTTATTCACCTTATGTTTAC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4602 No description available

Ensembl:

ensembl_id ENSDARG00000092858

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012700 False 1503 mRNA 0.35 6 20535159 20540790
TCONS_00012701 False 903 nonsense_mediated_decay 0.38 6 20535650 20540701
TCONS_00012702 True 744 lncRNA 0.40 4 20539513 20540669

Neighbor

gene id symbol gene type direction distance location
XLOC_006565 gfra1a coding downstream 16158 20392656 ~ 20519001 (-)
XLOC_006564 si:ch211-270n8.1 coding downstream 153674 20379392 ~ 20381485 (-)
XLOC_006563 AL954359.1 coding downstream 303409 20227045 ~ 20231750 (-)
XLOC_006562 AL954359.2 coding downstream 313025 20217490 ~ 20222134 (-)
XLOC_006561 fam204a coding downstream 735335 19766896 ~ 19799824 (-)
XLOC_006567 CU633804.1 coding upstream 6177 20546967 ~ 20547498 (-)
XLOC_006568 NA coding upstream 189044 20729834 ~ 20731888 (-)
XLOC_006569 NA coding upstream 535862 21076652 ~ 21079411 (-)
XLOC_006570 NA coding upstream 605324 21146114 ~ 21147382 (-)
XLOC_006571 tspan14 coding upstream 1097664 21638454 ~ 21650404 (-)
XLOC_006471 BX537274.2 misc downstream 10270254 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 19708934 825904 ~ 826225 (-)
XLOC_006559 NA non-coding downstream 1178148 19350851 ~ 19357011 (-)
XLOC_006558 NA non-coding downstream 1195723 19338477 ~ 19339436 (-)
XLOC_006557 NA non-coding downstream 1257827 19276173 ~ 19277332 (-)
XLOC_006577 NA non-coding upstream 1384911 21925701 ~ 21939965 (-)

Expression


Co-expression Network