tsn (tsn,LOC107555354,LOC107686515,LOC107555051,LOC107658218,LOC107725218)


Basic Information

Item Value
gene id tsn
gene name tsn,LOC107555354,LOC107686515,LOC107555051,LOC107658218,LOC107725218
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13821399 ~ 13823785 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249528.1
TCATTACATCATTATAACGCGACGAGCCGAGGAAGGGCAGATGTTAACGTGCATGCTGATGACTCCAGTTATAATTACAGGCTGTTTGGTTCTCGAGCACGACGACTAATAAACACACATCCATACACTATCAAAATAGTGTATATTTTTGGAGCAGCTGTTCACGTTAAAGAGCGACGCACAAGCCAGCACGTTTGAAGATGTCTGTAACGGAGATGTTTAGCTACATCCAAGGATTTTTGAGCGCCGATCAAGATATTCGAGAGGACATAagaaaagttgtccaaattctTGAGCAGACAGCTAGAGAGATCCTCACCGTTCTTCAAAGTGTCCATCAACCGAGTGGTTTCAAAGACATTCCCAGCAAGTGCTTGAGGGCTAGAGAGCTGTTCTGCACTGTAAGAAACCACACCGGAGAGCTGAAAACGAAGTTCCCCGTGGAACAGTACTATCGGTATCACGAACACTGGAGATTTGTTCTTCAACGTCTCGCCTTCCTTGCAGCTTTTGTGGTGTACCTGGAAAGCGAGTCCTTGGTTAGACGTGAGGAAGTGGCAAAAATACTCGACATTGAAGTTGACAGAGAAAAAGGGTTTCATTTGGATGTGGAAGACTATCTAGCGGGAGTTCTTATTTTGGCCAGCGAGCTGtCCAGGCTGGCGGTGAACAGCGTGACCGCAGGGGACTATGGACGTCCGCTAAGGATCTCAAACTTTATCAATGAGCTTGATTCTGGCTTTCGGTTGCTCAACTTAAAAAACGACCCTCTTCGCAAGCGCTACGATGGCCTCAAGTACGATGTGAAGAAGATCGAGGAGGTGGTGTACGATCTTTCCATCCGAGGCCTCGCCAAGGAGCAGGAGGCTGGAGGAGATAAGTAAAGGTGTTGTGGGAACACAAGAGGCCGCGGGCGCTACCCTGGCTGGGATTCTCCACGACCGGAAGAGCAGTTAAACCTGTCTGGAGGAAGAAGGGAGGGAGTAGAGGTTTTGAAGCCCCAGCAGCCTTGGGCAGTGTCTTTTAAACCACCTGCTCACCATGACTTCAGGTTTTAGCGGGGAGATCTTCTCTTTCTCACTTTTGTTGAGAGATGGTTATgtacaaatgcatttgtttgcctgtttagtttttttttgtttgttttcttgccaGTTGGACGCTTTTTACTGCTATTGACTTTTTTCTGTCTCGGCCGTGTCAGTGGTGAATCAttgtacagtttaaaaaaaaaaaaaaaaaaaaaaaaaaattctggggTGGAAGATACTTAAATGATGTTGAAAACAGAAGTTGTGTGCCTGTTTTATGGCTTCATGTCCAGCGGAGACATGAAGACATTTTCTTGATGTTAAACTACATAAATATTACGTATGAAACACACCTATACTCATTGATTTATCATATTGGGTTTTGTACTTGAGCACTTCTCTTGAATGTAAGTTCAAATGACTTGTTAATGGTAGCTTGCTGGTACATGAAGATAAATTTAAACCTTGTGCCAAAATGTTTAGTTCTAATtccataaatgcatattaaatctttaaatcgTCTAGTGCTTTCCTTAACCACTGGTGTgcatatttatgctttattatattactCCATTAAAAAGAGTTCATCCAATTA

Function

symbol description
tsn Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA metabolic process. Predicted to be active in cytoplasm and nucleus. Is expressed in forebrain and midbrain. Orthologous to human TSN (translin).

NR:

description
PREDICTED: translin

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249528.1 True 1629 mRNA 0.43 6 13821399 13823785

Neighbor

gene id symbol gene type direction distance location
eaf2 eaf2,LOC107683512,LOC107725251,LOC107723678,LOC107658291,LOC108261038 coding downstream 34271 13783785 ~ 13787128 (-)
si:dkey-91i10.3 si:dkey-91i10.3,LOC107658292,LOC107723676,LOC107725254,LOC107555356,LOC107683415,LOC107555015 coding downstream 37947 13777626 ~ 13783452 (-)
mmadhcb LOC107555358,LOC107723693,LOC107725215,LOC107555052,LOC107658219 coding downstream 56073 13760324 ~ 13765326 (-)
LOC122351432 LOC107723646,LOC107684057,LOC107555330,LOC107577428 coding downstream 127212 13684985 ~ 13694187 (-)
cntnap5a cntnap5a,LOC107723682,LOC107567780,LOC107684760,LOC107658203,LOC107725209,LOC108425961 coding downstream 246445 13515688 ~ 13574954 (-)
tnfaip6 tnfaip6,LOC107723653,LOC107658287,LOC107677671,LOC107555349,LOC107725226 coding upstream 90089 13913874 ~ 13921597 (-)
itgb5 itgb5,LOC107723672,LOC107725247,LOC107658201 coding upstream 102128 13925913 ~ 13961097 (-)
rbm44 LOC107674378,LOC107723642,LOC107555328,LOC107736749,LOC107735772 coding upstream 137972 13961757 ~ 13972062 (-)
etv5a etv5,etv5a,LOC107723673,LOC107729410,LOC107658285,LOC107673585 coding upstream 150262 13974047 ~ 13985162 (-)
LOC122351370 LOC107723674,LOC107672245,LOC107555347,LOC567728,LOC107555039,LOC107658284,LOC107729411 coding upstream 161230 13985015 ~ 14086771 (-)
G70263 LOC107723691,LOC107555352,LOC107725250,LOC107555050 non-coding downstream 4656 13815711 ~ 13816743 (-)
G70033 NA non-coding downstream 139260 13679380 ~ 13682139 (-)
G70027 NA non-coding downstream 145885 13674718 ~ 13675514 (-)
G69953 NA non-coding downstream 408960 13411812 ~ 13412439 (-)
G69888 col6a3,LOC107670696,LOC107567775,LOC107739950 non-coding downstream 493986 13302403 ~ 13327413 (-)
G70271 NA non-coding upstream 11461 13835246 ~ 13835699 (-)
G70272 NA non-coding upstream 13525 13837310 ~ 13837600 (-)
G70290 LOC107658288 non-coding upstream 35211 13858996 ~ 13859401 (-)
G70288 neb,LOC107658288,LOC107723644,LOC107678501 non-coding upstream 35998 13859783 ~ 13866148 (-)
G70289 NA non-coding upstream 37737 13861522 ~ 13861935 (-)
G70261 LOC107682829,LOC107723691,LOC107555352,LOC107658202,LOC107555050 other downstream 8072 13807822 ~ 13813327 (-)
tmem163a tmem163a,LOC107658221,LOC107725256,LOC107684456,LOC107555363,LOC106586306,LOC106582396 other downstream 147592 13642303 ~ 13673807 (-)
gypc gypc,LOC107723681,LOC107725252,LOC107555063,LOC107567781,LOC107684853,LOC107695565 other downstream 325732 13473135 ~ 13495667 (-)
G69757 NA other downstream 835421 12985124 ~ 12985978 (-)
LOC122352189 NA other downstream 1083228 12738044 ~ 12738171 (-)
rif1 LOC107658288,LOC107555351,LOC107658286,LOC107725242,LOC107680950 other upstream 55785 13879570 ~ 13912943 (-)
G70294 NA other upstream 114474 13938259 ~ 13939868 (-)
G70317 NA other upstream 372694 14196479 ~ 14253776 (-)
LOC122351495 NA other upstream 535861 14359646 ~ 14372674 (-)
G70549 NA other upstream 1479318 15303103 ~ 15305975 (-)

Expression


Co-expression Network