ralba (ralba,ralb,LOC107746258,LOC107597482,LOC107596059)


Basic Information

Item Value
gene id ralba
gene name ralba,ralb,LOC107746258,LOC107597482,LOC107596059
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18028354 ~ 18038668 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249540.1
GACGTCATATCCCGTTCATTTGCATGTCCTGAGGGTGGGGTATATGGCAGCAACGACAGCTTCGGAGAAACTACAGGGTGTATGAGTCGGAACAGGCGATTAATGCGTTCCACAAGATAGCATAAGAGACAGAGGAGGACAAAGTCACCGAGAGGTGGTGCCAGATTGTCTGTGGGCGTCTTGTGGTGTACCCGAGGAAGGCTATTAGACATGGCAGCCAATAAGAGTAAGGGTCAGAGCTCTCTCGCCCTGCACAAGGTCATTATGGTGGGCAGTGGAGGCGTAGGAAAATCTGCTCTTACCCTTCAGTTTATGTATGATGAGTTCGTTGAAGATTATGAGCCCACAAAGGCTGACAGCTACAGGAAGAAAGTGGTGTTGGATGGAGAAGAGGTGCAGATTGACATTTTGGACACAGCTGGGCAGGAAGATTACGCGGCTATCCGAGACAACTATTTCCGTAGCGGAGAGGGTTTCCTGTTGGTGTTCTCCATAACGGAGCACGAGTCTTTCACGGCCACAGCAGAATTCAGGGAGCAGATCCTGCGGGTTAAAGCCGAGGAGGATAAGATTCCGCTGCTTTTGGTTGGAAATAAGTCAGACCTTGAGGATCGGAGGCAGGTTTCAGTGGACGAGGCCAGAGGAAAAGCAGAAGAATGGGGTGTGCAGTATGTAGAGACGTCCGCCAAGACGAGGGCCAATGTGGACAAGGTATTTTTTGATCTAATGAGGGAAGTCCGTGCTAAAAAGATGTCAGAAAATAAGGACAAAAACGGGAAgggaaaaaataagaagaataagAAGAGCTTCAAAGAGAGATGCTGTTTACTTTGAACTACACTTGGACTTTTCCCCATAAAATCTACTTGCAACTCTGAGGGGAAACTCCatcagagactttttttttttttaattaaaatcaaaacttgATTAGTAAGGTTTTGTACTTGTCAAGGTAAGCCTTCATCACAGTCTTTCATTCCCttagttcatttcaaataaCTAGACTAAGATTGAATGGTATGCGTACTTTTTAATGGAAGATGACCACTATATGGCTACTGGTCGACGACTGTGGCACTTTAGGACTTCTTAAAATGTAGTTGGCCGACATGCGCCCAACACTAATTTTACTGCTCTGTAATCCATCTTTCCCTTGCCCCTTACAATTTTAAGTAGAAATCCTCTTTATTGGGCAAaggtatttctttctttttttttttttttttttttgcacgccTTTTTGAGtattgttagatttttttaaaatctaaccATTTTATTTCAACACCTGTTGACACCATCAATGCATAGAGTTTTTGTAGATCAAGATGTATTGTGGTAGTACTGTGGTTTTTAAACTCTCTATGAAAGACACCCTTGAAAAGCACACGTGGTATTGAGGACGGAGTGCCCAAGCATGGACTAATAGTGCCACCCGGTGGTTCATAAATATATCTTTTCAGGAAGTCCTCATGCCTAATTGCAAGTTACTAACCTCTGTGAACTGATCTGCCTTTATGCTTTCgtgttttaattgaaatatttttgtaggaCTTGTTACATTTCCACCACTGTCTTATGAGAAGAATGTATTCTGTGTGAAAATGTGCCAACAAGCACCATGACTAAAACCGCTTCGCTGCATTTTCAGAACGTAAGACACGTTTGTTTAGCACTCTGAGCTCGGAGCTGCGGTTTCACCAGTAATTTAAAACTGCTCTTTTATACAAATATCACCTAACCTAGACTGCAATTTGTATTGTAGTTTTCCACTGGCTTTTAGAAGAAAAACTTCGAAGTATGTtgccaaataaacattttcttctcCTTTTGTA

Function

symbol description
ralba Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in Ras protein signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in pancreatic adenocarcinoma. Orthologous to human RALB (RAS like proto-oncogene B).
ralb Enables GTPase activity; enzyme binding activity; and guanyl ribonucleotide binding activity. Involved in several processes, including cellular response to exogenous dsRNA; negative regulation of protein binding activity; and positive regulation of cellular metabolic process. Located in midbody and plasma membrane. Implicated in pancreatic adenocarcinoma.

NR:

description
PREDICTED: ras-related protein Ral-B

GO:

id name namespace
GO:0007265 Ras protein signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005886 plasma membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07835 RALB; Ras-related protein Ral-B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249540.1 True 1838 mRNA 0.42 5 18028354 18038668

Neighbor

gene id symbol gene type direction distance location
dnajc28 dnajc28,LOC107748188,LOC107673653,LOC107597584,LOC107756751,LOC107656783,LOC107569146 coding downstream 376233 17649975 ~ 17652121 (-)
zp2l1 NA coding downstream 453980 17559528 ~ 17574374 (-)
appb appb,LOC107597486,LOC107748127,LOC107595805,LOC107756757,LOC107695460,LOC108426075 coding downstream 712536 17299245 ~ 17315818 (-)
si:ch211-160b11.4 NA coding downstream 829963 17196411 ~ 17198391 (-)
mettl21cb zgc:172067,LOC107673723,LOC107748129,LOC107597488 coding downstream 836212 17188746 ~ 17192142 (-)
hspbap1 LOC107722869,LOC107661136,LOC107660643 coding upstream 158458 18197126 ~ 18205461 (-)
adcy5 adcy5,LOC107555914,LOC107661140,LOC107660638,LOC107596066,LOC107714401 coding upstream 388404 18427072 ~ 18492873 (-)
hacd2 hacd2,LOC107660639,LOC107741899,LOC107661144 coding upstream 455418 18494086 ~ 18499894 (-)
si:dkey-219c10.4 LOC107741933,LOC108266238,LOC106586425,LOC102795313,LOC101468032,LOC107673728,LOC107660664,LOC107555910 coding upstream 495984 18534652 ~ 18545151 (-)
ccdc93 ccdc93,LOC107741907,LOC107555923,LOC107596073,LOC107714249 coding upstream 587749 18626417 ~ 18633604 (-)
LOC122352098 NA non-coding downstream 292435 17733203 ~ 17735919 (-)
G71194 NA non-coding downstream 335534 17665519 ~ 17692820 (-)
G71190 NA non-coding downstream 366909 17661216 ~ 17661445 (-)
G71175 NA non-coding downstream 382434 17644438 ~ 17645920 (-)
G71187 NA non-coding downstream 384678 17643356 ~ 17643676 (-)
G71293 NA non-coding upstream 183646 18222314 ~ 18226787 (-)
G71339 NA non-coding upstream 469772 18508440 ~ 18510009 (-)
G71341 NA non-coding upstream 472505 18511173 ~ 18511528 (-)
G71389 NA non-coding upstream 570159 18608827 ~ 18697031 (-)
G71400 LOC107555927,LOC107660626,LOC107741910,LOC107660658,LOC107660625,LOC107578255,LOC107714212 non-coding upstream 614959 18653627 ~ 18654751 (-)
ncam2 ncam2,LOC107756756,LOC108426076,LOC107595857,LOC107673712,LOC107748174 other downstream 506794 17364187 ~ 17521560 (-)
G71118 erbb4,LOC107660610,LOC107721020,LOC107741926,LOC103360983,LOC106519748,LOC103461563 other downstream 772863 17235872 ~ 17255491 (-)
cd247l cd247l,LOC107595825,LOC107673686,LOC107756738,LOC107597501,LOC107748195,LOC107695491 other downstream 1138807 16886753 ~ 16889547 (-)
G70986 pou2f1b,LOC107748141 other downstream 1204579 16817140 ~ 16823775 (-)
dcaf6 LOC107673675,LOC107695452,LOC107748145,LOC107595867 other downstream 1282132 16720804 ~ 16746222 (-)
sema5ba sema5ba,sema5b,LOC107597557,LOC107660660,LOC107596063 other upstream 212568 18251236 ~ 18366267 (-)
LOC122352185 NA other upstream 531087 18569755 ~ 18569882 (-)
ankar ankar,LOC107728908,LOC107660654 other upstream 1681274 19719942 ~ 19731794 (-)
glsb glsb,gls,LOC107660591,LOC107728921,LOC107714384,LOC107657529,LOC107602138,LOC106531437 other upstream 1757584 19796252 ~ 19829475 (-)
nab1b nab1b,LOC107602153,LOC107660590,LOC107565022,LOC107714351,LOC107657527,LOC107728906 other upstream 1795252 19833920 ~ 19852625 (-)

Expression


Co-expression Network